View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21395_low_1 (Length: 686)
Name: NF21395_low_1
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 29 - 670
Target Start/End: Original strand, 5689337 - 5689971
Alignment:
| Q |
29 |
tttgggaccaatggagtaattaaatatagattttaaatcaaaatattcaacgtaaacaatcgcatatagacagtatttgactattcatcaaacgatatac |
128 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5689337 |
tttgggacaaatggagtaattaaatatagattttaaatcaaaatattcaacgtaaacaatcgcatataaacagtatttgactattcatcaaacgatatac |
5689436 |
T |
|
| Q |
129 |
tacttgcaaaaagtgtccaaataatacagaaagacctatccaatagcatgcctataaaataaaatcttgtcgttatactctagagatgagggcaagaata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5689437 |
tacttgcaaaaagtgtccaaataatacagaaagacctatccaatagcatgcctataaaataaaatcttgtcgttatactctagagatgagggcaagcata |
5689536 |
T |
|
| Q |
229 |
agcattggttagagattcaagtacactatggcaatgaacaacgtttcaatgacatgcctattccttctccttcttccattggtctcatgcgccaaaaata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5689537 |
agcattggttagagattcaagtacactatggcaatgaacaacgtttcaatgacatgcctattccttctccttcttccattggtctcatgcaccaaaaata |
5689636 |
T |
|
| Q |
329 |
atcaggtctttcattttttnnnnnnnnnnnnnnnnncataatcnnnnnnnnctcctctggatttctatgtaggaattcatatctattggatcttctcaca |
428 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5689637 |
atcaggtctttcattttt-------ctactactactcataatcttttttttctcctctggatttctatgtaggaattcatatctattggattttctcaca |
5689729 |
T |
|
| Q |
429 |
ggtttatctagtggaatttggagagcacaataatggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttttggtaaaagaaact |
528 |
Q |
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| T |
5689730 |
ggtttatctagtggaatttggagagcacaataatggacataaaacactgcatgaaatagagaatacacatcactcttatttgcttttggtaaaagaaact |
5689829 |
T |
|
| Q |
529 |
gaggaggaagctagggtttcccttctttatagttataaacacactttcaatggttttgcagcattacttacaccaaatgaagccaataatctctcaggta |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689830 |
gaggaggaagctagggtttcccttctttatagttataaacacactttcaatggttttgcagcattacttacaccaaatgaagccaataatctctcaggta |
5689929 |
T |
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| Q |
629 |
aagttatactactttgtaatttcatgttacaactcactagct |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689930 |
aagttatactactttgtaatttcatgttacaactcactagct |
5689971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 421 - 629
Target Start/End: Original strand, 5680409 - 5680620
Alignment:
| Q |
421 |
ttctcacaggtttatctagtggaatttggagagcacaataat---ggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttttgg |
517 |
Q |
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|||||||||||||||||||| ||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680409 |
ttctcacaggtttatctagttgaacttggagagaacaatattaaaggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttttgg |
5680508 |
T |
|
| Q |
518 |
taaaagaaactgaggaggaagctagggtttcccttctttatagttataaacacactttcaatggttttgcagcattacttacaccaaatgaagccaataa |
617 |
Q |
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| |||||||||||||| |||||| | | ||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
5680509 |
tgaaagaaactgaggatgaagctcgagcttcccatctttacagttacaaacacactttcaatggctttgcagcattacttacacctaatgaagccaataa |
5680608 |
T |
|
| Q |
618 |
tctctcaggtaa |
629 |
Q |
| |
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||| |||||||| |
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| T |
5680609 |
tctttcaggtaa |
5680620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 5680248 - 5680304
Alignment:
| Q |
290 |
tccttctccttcttccattggtctcatgcgccaaaaataatcaggtctttcattttt |
346 |
Q |
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|||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||| |
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|
| T |
5680248 |
tcctgctccttcttccattggtgtcatgcaccaataataatcaggtctttcattttt |
5680304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 5680038 - 5680074
Alignment:
| Q |
152 |
atacagaaagacctatccaatagcatgcctataaaat |
188 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
5680038 |
atacagaaagacatgtccaatagcatgcctataaaat |
5680074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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