View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21395_low_10 (Length: 313)
Name: NF21395_low_10
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 38177757 - 38178054
Alignment:
| Q |
24 |
aatttaatttgttgtaaatgtaaaaaatcaacagcatcactatatccatcattaattaacccaacactttatctctaggtaataactacaccagcattgc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177757 |
aatttaatttgttgtaaatgtaaaaaatcaacagcatcactatatccatcattaattaacccaacactttatctctaggtaataactacaccagcattgt |
38177856 |
T |
|
| Q |
124 |
catcaacaatagcagaaacaacagcccaacaccatcaacaagatagtcactggcatgtgaataaaacagaataatccatctgctttcctctgttcccttt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38177857 |
catcaacaatagcagaaacaacagcccaacaccatcaacaagatagtcactggcatgtgaataaaacagaacaatccatctgctttcctctgttcccttt |
38177956 |
T |
|
| Q |
224 |
aaatgctatcttttcaatgataccaaatgtaccactttcactttatgtctc--------tcattttttattacatatctaacacagttatctacaaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177957 |
aaatgctatcttttcaatgataccaaatgtaccactttcactttatgtctctcattttttcattttttattacatatctaacacagttatctacaaaa |
38178054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 38700354 - 38700283
Alignment:
| Q |
25 |
atttaatttgttgtaaatgtaaaaaatcaacagcatcactatatccatcattaattaacccaacactttatc |
96 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||| |||||||||||| |
|
|
| T |
38700354 |
atttgatttgttgtaaatgtaaaaaatcaacaacatcactctatacatcaataattaactcaacactttatc |
38700283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University