View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21395_low_12 (Length: 297)
Name: NF21395_low_12
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 9091776 - 9091503
Alignment:
| Q |
8 |
aaattatactctattttaacactaacttcaacataaggttttaattttttggcaggcaaacatgtatacaatgagagagctgattagtaacgatcgaaag |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9091776 |
aaataatactctattttaacactaacttcaacataaggttttaattttttggcaggcaaacatgtatacaatgagagagctgattagtaacgatcgaaaa |
9091677 |
T |
|
| Q |
108 |
tcagataatgtaaacaaaagtaaggattaagtctaagagaaaccacagattatcaagaaaaagataaagccaaaaattatttactgcattgcatattaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9091676 |
tcagataatgtaaacaaaagtaaggattaagtctaagaaaaaccaaagattatcaagaaaaagataaagccaaaaattatttactgcattgtatattaca |
9091577 |
T |
|
| Q |
208 |
cgtaccgtgttatagtctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagata |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9091576 |
cgtaccgtgttatagtctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagata |
9091503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 9095737 - 9095649
Alignment:
| Q |
193 |
gcattgcatattacacgtaccgtgttatagtctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagata |
281 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9095737 |
gcattgcatattacatgtaccatgttatagtctaattgatgttacagaatcttacaagttgagtatgtgatactcttgcaagagagata |
9095649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University