View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21395_low_2 (Length: 644)
Name: NF21395_low_2
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 6818484 - 6818208
Alignment:
| Q |
10 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggttgacctcaagttccacctatatacttgattattcaatgactccaatgttgctgt |
109 |
Q |
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| T |
6818484 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggttgacctgaagttctac----atacttgattattcaatgactccaatgttgctgt |
6818389 |
T |
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| Q |
110 |
ccacgagtttggacttaggatacttacattcaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattgtgattgtgaggtag |
209 |
Q |
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| T |
6818388 |
ccacgagtttggactttggatacttacattaaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggt------attgggaggtag |
6818295 |
T |
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| Q |
210 |
atggtcacaatctatcccatcagactggaattttttcttg-gcaagccatcaaactggacttaattataaggtgattgcattcagtt |
295 |
Q |
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| T |
6818294 |
atggtcacaatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagtt |
6818208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 6808289 - 6808012
Alignment:
| Q |
10 |
aagaatatcctactcaccgtctgcgggggtgtcttttccatatggt--------tgacctcaagttccacctatatacttgattattcaatgactccaat |
101 |
Q |
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| T |
6808289 |
aagaatatcctattcaccggctgcgggggtgtcttttccatatggtattatggttgacctcaagttccac----atacttggttattcaatg-------- |
6808202 |
T |
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| Q |
102 |
gttgctgtccacgagtttggacttaggata--cttacattcaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattgtgat |
199 |
Q |
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| T |
6808201 |
-ttgctttccacgagtttgggctttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggt------at |
6808109 |
T |
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| Q |
200 |
tgtgaggtagatggtcacaatctatcccatcagactggaattttttcttg-gcaagccatcaaactggacttaattataaggtgattgcattcagtt |
295 |
Q |
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| T |
6808108 |
tgggaggtagatggtcacaatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagtt |
6808012 |
T |
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