View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21395_low_3 (Length: 604)

Name: NF21395_low_3
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21395_low_3
NF21395_low_3
[»] chr1 (32 HSPs)
chr1 (20-592)||(11137490-11138062)
chr1 (241-316)||(47498964-47499038)
chr1 (255-313)||(27820475-27820532)
chr1 (258-316)||(48064183-48064241)
chr1 (271-311)||(10280521-10280561)
chr1 (241-309)||(27146369-27146436)
chr1 (241-317)||(37473263-37473338)
chr1 (241-312)||(5894284-5894354)
chr1 (259-314)||(10744184-10744239)
chr1 (268-310)||(4920898-4920940)
chr1 (241-314)||(37841875-37841947)
chr1 (281-317)||(9236977-9237013)
chr1 (241-317)||(14331653-14331728)
chr1 (241-309)||(33541839-33541906)
chr1 (261-312)||(1729755-1729806)
chr1 (262-313)||(4576666-4576717)
chr1 (241-304)||(9507121-9507184)
chr1 (256-315)||(24417817-24417876)
chr1 (272-311)||(34619514-34619553)
chr1 (241-312)||(37593790-37593861)
chr1 (256-295)||(38578423-38578462)
chr1 (255-310)||(51688576-51688630)
chr1 (272-310)||(10082517-10082555)
chr1 (278-315)||(1510100-1510137)
chr1 (279-316)||(2194486-2194523)
chr1 (276-313)||(38219822-38219859)
chr1 (241-317)||(38247318-38247392)
chr1 (256-308)||(7472556-7472608)
chr1 (269-321)||(15514920-15514972)
chr1 (271-311)||(31517888-31517928)
chr1 (257-313)||(35058893-35058949)
chr1 (290-318)||(42938682-42938710)
[»] chr4 (27 HSPs)
chr4 (242-315)||(26520351-26520424)
chr4 (241-310)||(2987069-2987138)
chr4 (241-313)||(30066887-30066959)
chr4 (261-317)||(39178376-39178432)
chr4 (241-310)||(26883875-26883944)
chr4 (269-315)||(42865996-42866042)
chr4 (273-311)||(54214894-54214932)
chr4 (241-313)||(6364021-6364098)
chr4 (278-315)||(19039656-19039693)
chr4 (256-317)||(50298404-50298465)
chr4 (241-310)||(50681220-50681288)
chr4 (271-308)||(51560422-51560459)
chr4 (241-317)||(3155477-3155552)
chr4 (271-315)||(47399409-47399453)
chr4 (261-316)||(17823013-17823068)
chr4 (242-308)||(679136-679202)
chr4 (261-315)||(47771871-47771925)
chr4 (273-310)||(1965834-1965871)
chr4 (271-308)||(42461172-42461209)
chr4 (241-310)||(50662853-50662921)
chr4 (272-313)||(52172674-52172715)
chr4 (272-308)||(3805184-3805220)
chr4 (242-310)||(11389407-11389474)
chr4 (271-311)||(17883947-17883987)
chr4 (241-317)||(22539168-22539243)
chr4 (289-317)||(30090131-30090159)
chr4 (272-312)||(43824179-43824219)
[»] chr2 (27 HSPs)
chr2 (238-317)||(39567776-39567855)
chr2 (241-315)||(41407167-41407240)
chr2 (242-303)||(9833042-9833103)
chr2 (264-312)||(28039460-28039508)
chr2 (272-315)||(5752751-5752794)
chr2 (241-312)||(39659639-39659709)
chr2 (248-314)||(41702313-41702379)
chr2 (255-312)||(1633691-1633747)
chr2 (272-317)||(15288758-15288803)
chr2 (255-316)||(36534663-36534723)
chr2 (254-314)||(41293375-41293436)
chr2 (260-312)||(41880642-41880694)
chr2 (272-311)||(4550657-4550696)
chr2 (241-304)||(5599181-5599243)
chr2 (272-311)||(40158643-40158682)
chr2 (263-313)||(6167425-6167475)
chr2 (254-316)||(12313306-12313368)
chr2 (254-312)||(15757810-15757867)
chr2 (241-315)||(19608746-19608819)
chr2 (242-308)||(26626759-26626824)
chr2 (261-311)||(30167579-30167629)
chr2 (242-316)||(42457823-42457896)
chr2 (241-310)||(2416194-2416262)
chr2 (271-304)||(39866476-39866509)
chr2 (255-307)||(1985450-1985502)
chr2 (253-309)||(12795664-12795719)
chr2 (274-310)||(27663586-27663622)
[»] chr3 (35 HSPs)
chr3 (255-310)||(5435712-5435767)
chr3 (251-312)||(46886828-46886888)
chr3 (241-317)||(31365403-31365478)
chr3 (254-317)||(34118829-34118892)
chr3 (268-311)||(37138241-37138284)
chr3 (271-313)||(36587869-36587911)
chr3 (241-310)||(30956757-30956825)
chr3 (241-310)||(30972569-30972637)
chr3 (271-316)||(37308215-37308260)
chr3 (256-305)||(55113549-55113598)
chr3 (272-312)||(3776781-3776821)
chr3 (247-287)||(30443657-30443697)
chr3 (242-310)||(36631183-36631250)
chr3 (257-317)||(36887396-36887456)
chr3 (253-317)||(47132241-47132304)
chr3 (261-312)||(19679446-19679497)
chr3 (241-312)||(30574033-30574104)
chr3 (245-316)||(34235201-34235271)
chr3 (254-311)||(944363-944420)
chr3 (164-194)||(20467177-20467207)
chr3 (241-286)||(12833888-12833933)
chr3 (261-310)||(20874440-20874489)
chr3 (261-310)||(25699297-25699346)
chr3 (247-312)||(34034040-34034104)
chr3 (253-302)||(40665317-40665366)
chr3 (241-309)||(1508712-1508779)
chr3 (268-312)||(5430920-5430964)
chr3 (271-315)||(9995850-9995894)
chr3 (271-315)||(10131536-10131580)
chr3 (271-315)||(10216867-10216911)
chr3 (271-315)||(10220386-10220430)
chr3 (272-308)||(19679859-19679895)
chr3 (272-308)||(29427768-29427804)
chr3 (278-310)||(31762206-31762238)
chr3 (241-317)||(53789592-53789667)
[»] chr7 (24 HSPs)
chr7 (241-311)||(21568759-21568828)
chr7 (271-314)||(35331020-35331063)
chr7 (272-318)||(25595978-25596024)
chr7 (241-317)||(7612332-7612408)
chr7 (241-316)||(40009345-40009419)
chr7 (242-317)||(47795831-47795905)
chr7 (271-317)||(34672900-34672946)
chr7 (271-316)||(425972-426017)
chr7 (256-317)||(27863843-27863903)
chr7 (271-312)||(31002953-31002994)
chr7 (264-316)||(5620237-5620289)
chr7 (272-308)||(32156891-32156927)
chr7 (274-317)||(32791904-32791947)
chr7 (261-316)||(46945769-46945824)
chr7 (244-311)||(48131228-48131294)
chr7 (275-313)||(18350814-18350852)
chr7 (241-311)||(43250800-43250870)
chr7 (271-316)||(12110250-12110295)
chr7 (272-316)||(6824809-6824853)
chr7 (290-318)||(7467945-7467973)
chr7 (273-313)||(25827283-25827323)
chr7 (268-308)||(34922839-34922879)
chr7 (242-286)||(44777104-44777148)
chr7 (271-307)||(47302822-47302858)
[»] chr5 (37 HSPs)
chr5 (272-313)||(6593177-6593218)
chr5 (241-310)||(10771999-10772068)
chr5 (241-312)||(42573900-42573971)
chr5 (254-316)||(8089673-8089735)
chr5 (255-331)||(9202883-9202958)
chr5 (273-315)||(29845050-29845092)
chr5 (241-291)||(39105363-39105413)
chr5 (242-307)||(19460508-19460572)
chr5 (247-312)||(34590355-34590420)
chr5 (241-314)||(38034155-38034228)
chr5 (254-310)||(5559610-5559666)
chr5 (241-309)||(7319142-7319209)
chr5 (277-317)||(7907753-7907793)
chr5 (256-316)||(30291135-30291195)
chr5 (271-315)||(32927972-32928016)
chr5 (271-315)||(38105014-38105058)
chr5 (272-316)||(41819486-41819530)
chr5 (255-314)||(14675035-14675094)
chr5 (261-312)||(20982275-20982326)
chr5 (241-316)||(28776850-28776924)
chr5 (243-310)||(32372495-32372561)
chr5 (262-308)||(4620069-4620115)
chr5 (254-304)||(11706742-11706792)
chr5 (279-313)||(11715018-11715052)
chr5 (261-315)||(26516174-26516228)
chr5 (268-310)||(40731174-40731216)
chr5 (261-314)||(6725114-6725167)
chr5 (287-316)||(14955598-14955627)
chr5 (255-307)||(2568534-2568586)
chr5 (276-316)||(15905652-15905692)
chr5 (244-312)||(16938001-16938068)
chr5 (271-315)||(26796338-26796382)
chr5 (271-315)||(26799856-26799900)
chr5 (271-315)||(26807406-26807450)
chr5 (272-316)||(27104565-27104609)
chr5 (269-313)||(30585575-30585619)
chr5 (272-316)||(40111171-40111215)
[»] chr8 (23 HSPs)
chr8 (255-310)||(2840239-2840294)
chr8 (255-310)||(2844926-2844981)
chr8 (245-311)||(37353373-37353439)
chr8 (241-310)||(14956426-14956494)
chr8 (261-317)||(4389817-4389873)
chr8 (270-314)||(31751706-31751750)
chr8 (249-317)||(40980994-40981061)
chr8 (255-310)||(2833465-2833520)
chr8 (268-310)||(44426535-44426577)
chr8 (256-311)||(29819026-29819080)
chr8 (271-310)||(31118859-31118898)
chr8 (254-309)||(31916462-31916517)
chr8 (241-304)||(40637424-40637486)
chr8 (241-312)||(43730655-43730726)
chr8 (241-286)||(40859839-40859884)
chr8 (272-313)||(43385609-43385650)
chr8 (262-310)||(8499087-8499135)
chr8 (279-315)||(12225027-12225063)
chr8 (239-283)||(15179049-15179093)
chr8 (241-313)||(26215374-26215445)
chr8 (268-308)||(30665654-30665694)
chr8 (243-307)||(41442558-41442622)
chr8 (271-311)||(42215454-42215494)
[»] chr6 (8 HSPs)
chr6 (258-317)||(24626159-24626217)
chr6 (255-317)||(264245-264306)
chr6 (271-314)||(7946024-7946067)
chr6 (241-311)||(26550334-26550404)
chr6 (241-286)||(30926432-30926477)
chr6 (241-310)||(32206141-32206210)
chr6 (241-310)||(34430587-34430655)
chr6 (255-316)||(35069427-35069487)
[»] scaffold0050 (1 HSPs)
scaffold0050 (244-310)||(58475-58540)
[»] scaffold0110 (1 HSPs)
scaffold0110 (271-308)||(34062-34099)


Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 20 - 592
Target Start/End: Complemental strand, 11138062 - 11137490
Alignment:
Q  20 ctcccgcctctcccgtgagttttaatctcaacccttctttttctgtgttcatgtaaattgtaactaaactcgattcagttctaatgtatgatatggtcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11138062 ctcccgcctctcccgtgagttttaatctcaacccttctttttctgtgttcatgtaaattgtaactaaactcgattcagttctaatgtatgatatggtcac 11137963  T
Q  120 tgctttaggacctgtttggatttacttatttactcacttctcagaacagtttatgacatgttcatatgctgttttagcnnnnnnn-ataagctcaccatg 218  Q
    |||||||||||||||||||||||| |||||||     || | | ||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  11137962 tgctttaggacctgtttggatttatttattta-----ttatgaaaacagtttatgacatgttcatatgctgttttagcttttttttataagctcaccatg 11137868  T
Q  219 atagcttatcaaaacaacttat--cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgttt--atccaaacagggc 314  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  11137867 atagcttatcaaaacaacttaaagcttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttttttttatccaaacagggc 11137768  T
Q  315 cttcaattgtttcatattgtaattccttttgagtttaagatagaaggttgtgactcgtgtgtgtattgtattcttttgnnnnnnntaaggtgaagtgtac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  11137767 cttcaattgtttcatattgtaattccttttgagtttaagatagaaggttgtgactcgtgtgtgtattgtattcttttgaaaaaaataaggtgaagtgtac 11137668  T
Q  415 atttttagattatagccgagtttgattattgtgtttatatactacggggtttaagaacattttttatagctattcctaacccaccttatggcattgatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11137667 atttttagattatagccgagtttgattattgtgtttatatactacggggtttaagaacattttttatagctattcctgacccaccttatggcattgatta 11137568  T
Q  515 ttccatttagttagcgagaaaatgctttggttgttattattttcaccatcactttcactcgctttgtaagtggatatt 592  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11137567 ttccatttagttagcgagaaaatgctctggttgttattattttcaccatcactttcactcgctttgtaagtggatatt 11137490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 47498964 - 47499038
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||| ||  ||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||| ||||    
T  47498964 cttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaa-taagttgtttatccaaacagtgcct 47499038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 27820475 - 27820532
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||    
T  27820475 cttatcatgataagcgcttatgctataagctgcaaa-taagttgtttatccaaacaggg 27820532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 48064241 - 48064183
Alignment:
Q  258 atcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||| |  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggcct 48064183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 10280561 - 10280521
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10280561 cttatgctataagctgtaaactaagttgtttatccaaacag 10280521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 27146369 - 27146436
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||| ||| |||| | |||||||||||    
T  27146369 cttatacataaacgcttatcatgatatgtacttatgctataagctgcaaa-taagctatttatccaaac 27146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 37473338 - 37473263
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| ||||| |||||||| | |||| ||| |||||||| ||| ||||||||||||||||||||| ||||    
T  37473338 cttatacataagtgcttgtcatgataagaacttgtgcaataagctgcaaa-taagttgtttatccaaacaggccctt 37473263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 5894284 - 5894354
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||  ||||||||||||| |||||| ||||||||||| | || |||| ||||||||||||||||    
T  5894284 cttatacataagcgcttatcatgataagcacttgtgctataagct-tcaaataagctgtttatccaaacagg 5894354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 10744239 - 10744184
Alignment:
Q  259 tcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    |||||||| || ||||||||||||||||  ||||||||||||||| ||||||||||    
T  10744239 tcatgataagcgcttatgctataagctgagaattaagttgtttatacaaacagggc 10744184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 4920898 - 4920940
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  4920898 gcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 37841947 - 37841875
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    ||||||||| | | |||||||||||| |  |||||||||| ||||| ||||||||||||||| |||||||||||    
T  37841947 cttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaagttgttta-ccaaacagggc 37841875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 9236977 - 9237013
Alignment:
Q  281 aagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||| ||||||||||||||||||||||||||||||    
T  9236977 aagctgaaaattaagttgtttatccaaacagggcctt 9237013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 14331728 - 14331653
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| |||||||||||| | || ||| ||||||||||| | || |||| |||||||| ||||||||||||    
T  14331728 cttatacataagtgcttatcatgagaagcgcttgtgctataagct-tcaaataagctgtttatctaaacagggcctt 14331653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 33541839 - 33541906
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    |||||||||||  |||||||||||||  ||||| |||||||| ||| ||| ||||||||||||||||||    
T  33541839 cttatacataagcgcttatcatgataaacacttgtgctataaactgcaaa-taagttgtttatccaaac 33541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 1729755 - 1729806
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||| | ||||||| |||| ||||||||||||||||||||||||| ||||    
T  1729755 atgataagaacttatgatatacgctgtaaattaagttgtttatccaagcagg 1729806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 4576717 - 4576666
Alignment:
Q  262 tgatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    ||||| || ||||||||||||||| ||||||| ||| |||||||||||||||    
T  4576717 tgataagcgcttatgctataagctataaattatgttatttatccaaacaggg 4576666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 9507121 - 9507184
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatc 304  Q
    ||||||||| | || |||| |||||| |||||||||||||||| ||  ||||||||||||||||    
T  9507121 cttatacatgagtgtttattatgataagcacttatgctataagatgacaattaagttgtttatc 9507184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 24417817 - 24417876
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||||| |||||| || ||||||||| |||||||  |||||||||||| ||||||    
T  24417817 ttatcatgataagcacttgtgttataagctgcaaattaacctgtttatccaaatagggcc 24417876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 34619514 - 34619553
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  34619514 ttatgctataagctgcaaattaagctgtttatccaaacag 34619553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 37593790 - 37593861
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||   |||||| ||||| || ||| |||| ||||||| |||||||||||||||||||| ||||    
T  37593790 cttatacataaacacttatcgtgataagcgcttttgctttaagctgcaaattaagttgtttatccaagcagg 37593861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 38578462 - 38578423
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaag 295  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  38578462 ttatcatgataagcgcttatgctataagctgtaaattaag 38578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 51688630 - 51688576
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||    
T  51688630 cttatcatgataagcacttgtactataagctgcaaa-taagttgtttatccaaaca 51688576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 10082517 - 10082555
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  10082517 ttatgctataagctgaaatttaagttgtttatccaaaca 10082555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 1510100 - 1510137
Alignment:
Q  278 tataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  1510100 tataagctacaaattaagttgtttatccaaacagggcc 1510137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 2194486 - 2194523
Alignment:
Q  279 ataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  2194486 ataagctgcaaattaagctgtttatccaaacagggcct 2194523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 38219859 - 38219822
Alignment:
Q  276 gctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  38219859 gctataagctgcaaattaagatgtttatccaaacaggg 38219822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 38247392 - 38247318
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| ||| |||||||||| |  ||| |||||||||||| ||||  || |||||||||||||||| ||||    
T  38247392 cttatacataagtgcatatcatgataagtgcttgtgctataagctgcaaat--agctgtttatccaaacaggccctt 38247318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 7472608 - 7472556
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||| |  |||||||||||||||  |||||||| ||||||||||||    
T  7472608 ttatcatgataagggcttatgctataagcttgaaattaagctgtttatccaaa 7472556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 15514972 - 15514920
Alignment:
Q  269 cacttatgctataagctgtaaattaagttgtttatccaaacagggccttcaat 321  Q
    |||||||| |||||||  | |||||||||||||||||||| || |||||||||    
T  15514972 cacttatggtataagcgcttaattaagttgtttatccaaatagagccttcaat 15514920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 31517888 - 31517928
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||||||| |||||||| | |||||||||||||    
T  31517888 cttatgctataagctgcaaattaagctatttatccaaacag 31517928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 35058893 - 35058949
Alignment:
Q  257 tatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||| |  ||||||||||||| || ||| |||| |||||||||||||||||    
T  35058893 tatcatgataagtgcttatgctataagttgcaaaataagctgtttatccaaacaggg 35058949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 42938682 - 42938710
Alignment:
Q  290 attaagttgtttatccaaacagggccttc 318  Q
    |||||||||||||||||||||||||||||    
T  42938682 attaagttgtttatccaaacagggccttc 42938710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 26520351 - 26520424
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||||||||| ||||||||||||||  ||||||||||| |||| | ||||||||||||||||||||||||||||    
T  26520351 ttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaagttgtttatccaaacagggcc 26520424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 2987138 - 2987069
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||| |||| ||||||||||||||  |||||||| ||||||||| ||||||| |||||||||||||||    
T  2987138 cttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaacttgtttatccaaaca 2987069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 30066887 - 30066959
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||| || |||||||||| ||| || |||||||||||||||| ||||||| |||||||| |||||||||    
T  30066887 cttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaaattgtttatgcaaacaggg 30066959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 39178376 - 39178432
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  39178376 atgataagcacttatactataagctgtaaaataagttgtttatccaaacaggacctt 39178432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 26883944 - 26883875
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||  ||||||| |||| || ||||||||||| |||| |||||||||||||||| ||||||    
T  26883944 cttatacataatcacttatcaagataagcgcttatgctatatgctgcaaattaagttgtttatacaaaca 26883875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 42866042 - 42865996
Alignment:
Q  269 cacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||||||||||||||   |||||||||||||||||||||||||||||    
T  42866042 cacttatgctataagtattaaattaagttgtttatccaaacagggcc 42865996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 54214932 - 54214894
Alignment:
Q  273 tatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  54214932 tatgctataagctgcaaattaagttgtttatccaaacag 54214894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 6364098 - 6364021
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgc-----tataagctgtaaattaagttgtttatccaaacaggg 313  Q
    ||||||||||| |||||||| ||||| |||||||||      ||||||||| |||||||||||||||| |||||||||    
T  6364098 cttatacataagtgcttatcttgataagcacttatgtaatgttataagctgaaaattaagttgtttattcaaacaggg 6364021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 19039693 - 19039656
Alignment:
Q  278 tataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  19039693 tataagctgcaaattaagttgtttatccaaacagggcc 19039656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 50298465 - 50298404
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| |   ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  50298465 ttatcatgataagtgtttatgctataagcttcaaattaagttgtttatccaaacatggcctt 50298404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 50681220 - 50681288
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||  ||||||||||||| |  ||| ||||||||||| |||| |||||||||||||||||||    
T  50681220 cttatacataaacgcttatcatgataagttcttgtgctataagctataaa-taagttgtttatccaaaca 50681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 51560422 - 51560459
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  51560422 cttatgcaataagctgtaaattaagttgtttatccaaa 51560459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 3155552 - 3155477
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||  |||||||||||||| || ||| | |||||||||| | || |||||||||||||||| ||||||||    
T  3155552 cttatacatacatgcttatcatgataagcgcttgtactataagctgcagat-aagttgtttatccaaatagggcctt 3155477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 47399453 - 47399409
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||    
T  47399453 cttatcctataagctgcaaactaagttgtttatccaaacagggcc 47399409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 17823068 - 17823013
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||| || |||||||||| ||||| |||||||| |||||||||||||| |||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggcct 17823013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 679202 - 679136
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||  ||||||||| ||| |||| | || ||||||||  |||||||||||||||||||||    
T  679202 ttatacataagcgcttatcattataagcacatgtgttataagctacaaattaagttgtttatccaaa 679136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 47771925 - 47771871
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||||| || |||||||||||||||  ||| |||| |||||||||||||||||||    
T  47771925 atgataagcgcttatgctataagctccaaaataagctgtttatccaaacagggcc 47771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 1965871 - 1965834
Alignment:
Q  273 tatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||| || |||||||||||||||||||    
T  1965871 tatgctataagctgtcaaataagttgtttatccaaaca 1965834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 42461209 - 42461172
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  42461209 cttatcctataagctgaaaattaagttgtttatccaaa 42461172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 50662853 - 50662921
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||  ||| ||||||||| || ||| || ||||||||| ||| |||||||||||||||||||    
T  50662853 cttatacataaacgctcatcatgataagctcttgtgatataagctgcaaa-taagttgtttatccaaaca 50662921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 52172715 - 52172674
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||| ||| || ||||||||||||||||||||||||||    
T  52172715 ttatgctaaaaggtgcaaattaagttgtttatccaaacaggg 52172674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 3805184 - 3805220
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    |||||||||||||| | ||||||||||||||||||||    
T  3805184 ttatgctataagctctcaattaagttgtttatccaaa 3805220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 11389474 - 11389407
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||   |||||||||||| ||||| ||| ||||| ||| |||| ||||||||||||||||||    
T  11389474 ttatacataagcacttatcatgataagcactcatgatataaactgcaaat-aagttgtttatccaaaca 11389407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 17883987 - 17883947
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  17883987 cttatgctataagctaaaaattaagttgtttatcgaaacag 17883947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 22539168 - 22539243
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||  |||| |||||||| |  |||||||||||| ||| ||| |||||| |||||||||| ||||||||    
T  22539168 cttatacataaacgcttgtcatgataagggcttatgctataacctgcaaa-taagttatttatccaaagagggcctt 22539243  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 30090159 - 30090131
Alignment:
Q  289 aattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||||||||||||||||||||    
T  30090159 aattaagttgtttatccaaacagggcctt 30090131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 43824219 - 43824179
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||||||||||| |||||||||||||||  ||||||||    
T  43824219 ttatgctataagctgcaaattaagttgtttaaacaaacagg 43824179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 39567855 - 39567776
Alignment:
Q  238 tatcttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| || |||||||||||||| || ||||||| ||||||||| ||||||| ||||||||||||| |||||||    
T  39567855 tatcttatacacaagtgcttatcatgataagcgcttatgcaataagctgtgaattaagctgtttatccaaaccgggcctt 39567776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 41407240 - 41407167
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||||| |||||||||||||| || ||| |||||||||||| |||  ||| |||||||||||||||||||    
T  41407240 cttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaa-caagctgtttatccaaacagggcc 41407167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 9833103 - 9833042
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttat 303  Q
    |||||||||| || |||||||||||    |||||||||||||||||||||||||||||||||    
T  9833103 ttatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaagttgtttat 9833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 28039460 - 28039508
Alignment:
Q  264 atatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  28039460 atatgcgcttatgctataaactgcaaattaagttgtttatccaaacagg 28039508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 5752751 - 5752794
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  5752751 ttatgctataagcagttaattaagttgtttatccaaacagggcc 5752794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 39659639 - 39659709
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||  ||||||||||||| ||| || |||| ||||||| ||| |||||||||||||||||||||    
T  39659639 cttatacataagcgcttatcatgataagcatttgtgctctaagctgcaaa-taagttgtttatccaaacagg 39659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 41702313 - 41702379
Alignment:
Q  248 ataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    ||||| ||||||||||||| |   || |||||||||||| |||||||| ||||||||||||||||||    
T  41702313 ataatcgcttatcatgataagtgtttttgctataagctgaaaattaagctgtttatccaaacagggc 41702379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 1633691 - 1633747
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||| |||||| |||||||||||| ||| |||| ||||||||||||||||    
T  1633691 cttatcatgataagcacttctgctataagctgcaaa-taagctgtttatccaaacagg 1633747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 15288758 - 15288803
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  15288758 ttatgctataagctataaattaagctgttaatccaaacagggcctt 15288803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 36534723 - 36534663
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||| ||||||||| ||||| ||| |||| ||||||||||||||||||| ||||    
T  36534723 cttatcatgataagcacttatgttataaactgaaaat-aagttgtttatccaaacagagcct 36534663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 41293375 - 41293436
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaat-taagttgtttatccaaacagggc 314  Q
    ||||| ||||||| |||||| |||||||||||| |||  |||||||||||||||||||||||    
T  41293375 gcttaccatgatacgcacttgtgctataagctgcaaaaataagttgtttatccaaacagggc 41293436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 41880642 - 41880694
Alignment:
Q  260 catgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||| || ||| |||||||||||| ||| |||||||||||||||||||||    
T  41880642 catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaacagg 41880694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 4550696 - 4550657
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  4550696 ttatgctataagttgttaattaagttgtttatccaaacag 4550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 5599181 - 5599243
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatc 304  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||||| ||| |||||| ||||||    
T  5599181 cttataaataagtgcttattatgataagcacttatgctataagctgcaaa-taagttttttatc 5599243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 40158682 - 40158643
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  40158682 ttatgctataagctacaaattaagttgtttatccaaacag 40158643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 6167425 - 6167475
Alignment:
Q  263 gatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||| ||||||||||||||||| | |||| | |||||||||||||||||||    
T  6167425 gataagcacttatgctataagccgcaaatcatgttgtttatccaaacaggg 6167475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 12313306 - 12313368
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||| |  ||||| |||||||||| ||| |||| ||||||||||||||| ||||    
T  12313306 gcttatcatgatacgtgcttatactataagctgcaaaataagatgtttatccaaacagagcct 12313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 15757810 - 15757867
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||||||||| || ||| |||||||||||| ||| |||| ||||||||||||||||    
T  15757810 gcttatcatgataagcgcttgtgctataagctg-aaaataagctgtttatccaaacagg 15757867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 19608746 - 19608819
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||||| ||||||||||| ||||  ||| |||||||||||| ||| || | ||| |||||||||||||||    
T  19608746 cttatacataagtgcttatcatggtatgtgcttgtgctataagctgcaaa-tatgctgtatatccaaacagggcc 19608819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 26626824 - 26626759
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    |||||||||| |  ||||||||||| |  |||||||||||||||| ||| |||||||||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaa-taagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 30167629 - 30167579
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||| ||||||||||||||||  ||||| ||||||||| ||||||||||    
T  30167629 atgataagcacttatgctataaggagtaaaataagttgttcatccaaacag 30167579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 42457896 - 42457823
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||| |||||||||||||| || ||| ||||||||||   ||| ||||| ||| |||||||||||||||    
T  42457896 ttatacataaatgcttatcatgataggcgcttgtgctataagccacaaa-taagtggttaatccaaacagggcct 42457823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 2416262 - 2416194
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||   |||| ||||||| | |||| |||||||||||| |||| ||||||||||||||||||    
T  2416262 cttatacataagcacttaacatgataagaacttgtgctataagctgaaaat-aagttgtttatccaaaca 2416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 39866509 - 39866476
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatc 304  Q
    ||||||||||||||| ||||||||||||||||||    
T  39866509 cttatgctataagctctaaattaagttgtttatc 39866476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 1985502 - 1985450
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaa 307  Q
    |||||||||||| || |||||| || ||||||| | |||||||||||||||||    
T  1985502 cttatcatgataagcgcttatgataaaagctgtgatttaagttgtttatccaa 1985450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 12795719 - 12795664
Alignment:
Q  253 tgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    |||||||||||||| ||||||||||||||| ||| ||| |||  |||||||||||||    
T  12795719 tgcttatcatgataagcacttatgctataaactgcaaa-taaactgtttatccaaac 12795664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 27663586 - 27663622
Alignment:
Q  274 atgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||  ||||||||||||||||||||||||    
T  27663586 atgctataagcgctaaattaagttgtttatccaaaca 27663622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 5435767 - 5435712
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  5435767 cttatcatgataagcacttatgctataagctgtaaattaagttgcctatccaaaca 5435712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 46886828 - 46886888
Alignment:
Q  251 attgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||    
T  46886828 attgctaatcatgataagcacttatgctataagctgcaaa-taagttgtttatccaaacagg 46886888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 31365403 - 31365478
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| ||||||||||||||  ||||| |||||||||||| ||| |||| |||||||||| ||||| ||||    
T  31365403 cttatacataagtgcttatcatgataatcacttgtgctataagctgcaaa-taagctgtttatccacacaggtcctt 31365478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 34118892 - 34118829
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||||   | ||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  34118892 gcttatcatgatcaacgcttatgctataagttgtaatttaagttgtttatccaaacagagcctt 34118829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 37138284 - 37138241
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  37138284 gcacttatgctataagcttcaaattaagttgtttatccaaacag 37138241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 36587911 - 36587869
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  36587911 cttatgctataagctgtaaattaaattgtttatcgaaacaggg 36587869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 30956757 - 30956825
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||| ||||| |||||||||||||| || ||| |||||||||||| ||| |||| ||||||||||||||    
T  30956757 cttatgcataaatgcttatcatgataagcccttgtgctataagctgcaaa-taagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 30972569 - 30972637
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||| ||||| |||||||||||||| || ||| |||||||||||| ||| |||| ||||||||||||||    
T  30972569 cttatgcataaatgcttatcatgataagcccttgtgctataagctgcaaa-taagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 37308215 - 37308260
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||    
T  37308215 cttatgctataagcacttaattaagttgtttatccaaacagggcct 37308260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 55113598 - 55113549
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatcc 305  Q
    |||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  55113598 ttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 55113549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 3776781 - 3776821
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  3776781 ttatactataagcagtaaattaagttgtttatccaaacagg 3776821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 30443697 - 30443657
Alignment:
Q  247 cataattgcttatcatgatatgcacttatgctataagctgt 287  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  30443697 cataattgcttatcatgataagcacttgtgctataagctgt 30443657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 36631183 - 36631250
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||||||||||||| |||||| ||||||   ||| ||| ||||||||| |||||||||    
T  36631183 ttatacataattgcttatcatgataagcacttgtgctattgtctg-aaaataagttgttaatccaaaca 36631250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 36887456 - 36887396
Alignment:
Q  257 tatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||| |||| |||||||| |||||||||  |||||||| |||||||||||||| ||||||    
T  36887456 tatcacgataagcacttatcctataagctacaaattaagatgtttatccaaacatggcctt 36887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 47132304 - 47132241
Alignment:
Q  253 tgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||||| |  ||| ||||||||| || |||| |||||||||||||||||||||||||    
T  47132304 tgcttatcatgataagtgcttgtgctataaggtgaaaat-aagttgtttatccaaacagggcctt 47132241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 19679446 - 19679497
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||| || ||||| |||||||||| |||||||||||||||||||| ||||    
T  19679446 atgataggcccttatactataagctgcaaattaagttgtttatccaaccagg 19679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 30574033 - 30574104
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||  |||||||||||||    |||||| ||||||||| |||||| | ||||||||||||||||    
T  30574033 cttatacataagcgcttatcatgataaatgcttatgatataagctgcaaattatggtgtttatccaaacagg 30574104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 34235201 - 34235271
Alignment:
Q  245 tacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||| |||||||||||||| |||| | | |||||||||  ||| ||||||||||||||||||| |||||    
T  34235201 tacataagtgcttatcatgataagcacatgtactataagctacaaa-taagttgtttatccaaacaaggcct 34235271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 944420 - 944363
Alignment:
Q  254 gcttatcatgatatgcactta-tgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||||| ||||||| || ||||||||| |||| |||||||||||||||||||    
T  944420 gcttatcatgataagcacttagtgttataagctgcaaat-aagttgtttatccaaacag 944363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 20467177 - 20467207
Alignment:
Q  164 aacagtttatgacatgttcatatgctgtttt 194  Q
    |||||||||||||||||||||||||||||||    
T  20467177 aacagtttatgacatgttcatatgctgtttt 20467207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 12833933 - 12833888
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctg 286  Q
    |||||| |||| ||||||| |||||| |||||||||||||||||||    
T  12833933 cttataaataagtgcttattatgataagcacttatgctataagctg 12833888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 20874440 - 20874489
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||| ||||||||||||   | ||||||||||||||||||||||    
T  20874440 atgatatgcatttatgctataagtgcttaattaagttgtttatccaaaca 20874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 25699297 - 25699346
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||| ||||||||||||||||| || |||| ||||||||| |||||||    
T  25699297 atgataagcacttatgctataagcggttaattgagttgtttaaccaaaca 25699346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 34034104 - 34034040
Alignment:
Q  247 cataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||| |||||||||||||| || | | | |||||||||| |||| ||||||||||||||||||||    
T  34034104 cataagtgcttatcatgataagcgcctgttctataagctgaaaat-aagttgtttatccaaacagg 34034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 40665366 - 40665317
Alignment:
Q  253 tgcttatcatgatatgcacttatgctataagctgtaaattaagttgttta 302  Q
    |||||||||||||| | ||||||||||||||||| |||  ||||||||||    
T  40665366 tgcttatcatgataagaacttatgctataagctgcaaaaaaagttgttta 40665317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 1508712 - 1508779
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    |||||||||||  ||||||||||||| |||||| ||||||||| || ||| |||| ||||| |||||||    
T  1508712 cttatacataagcgcttatcatgataagcacttgtgctataagttgcaaa-taagctgtttttccaaac 1508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 5430964 - 5430920
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||||| |||||||| | |||||||||| |||||||||||||    
T  5430964 gcacttatgatataagctcttaattaagttgcttatccaaacagg 5430920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 9995894 - 9995850
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  9995894 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 9995850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 10131580 - 10131536
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  10131580 cttatgcaataagatgcaaaataagttgtttatccaaacagggcc 10131536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 10216911 - 10216867
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  10216911 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 10216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 10220430 - 10220386
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  10220430 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 10220386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 19679859 - 19679895
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  19679859 ttatgctataagctgcaaattaagttgtttctccaaa 19679895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 29427768 - 29427804
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  29427768 ttatgctataagccgtagattaagttgtttatccaaa 29427804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 31762238 - 31762206
Alignment:
Q  278 tataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||| |||||||||||||||||||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaaca 31762206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 53789592 - 53789667
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||| |||||| |||||||||||||| || ||| ||  |||||||| || |||||| ||||| ||||||||||||||    
T  53789592 cttacacataagtgcttatcatgataagcgcttgtggcataagctgcaa-ttaagtcgtttacccaaacagggcctt 53789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 21568759 - 21568828
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||    
T  21568759 cttatacataagtgcttatcatgataagcacttatgctataagctgcaaa-caagctgtttatccaaacag 21568828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 35331063 - 35331020
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  35331063 cttatgctataagctgtaaattaagttgtttttccaaacagggc 35331020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 25596024 - 25595978
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggccttc 318  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  25596024 ttatgctataagctgcaagttaagttgtttatccaaacagggccttc 25595978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 7612408 - 7612332
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||   ||||||||||||| |  |||||||||||||||| ||||||||||||||||  ||||||| ||||    
T  7612408 cttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaagttgtttattgaaacaggacctt 7612332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 40009419 - 40009345
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||  ||| ||||||||| | ||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  40009419 cttatacataagcgctaatcatgataagtacttatg-tgtaagctgaaaattaagttgtttattcaaacagggcct 40009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 47795905 - 47795831
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||| || ||||||||||| || |||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  47795905 ttatacataagtggttatcatgataagcgcttatgctataagctgcaaa-taagctgtttatctaaacaaggcctt 47795831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 34672900 - 34672946
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  34672900 cttatgctataagctgaaaattaagctgtttatccaaacaggtcctt 34672946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 425972 - 426017
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  425972 cttatgctataagctgcaaaataagttatttatccaaacagggcct 426017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 27863843 - 27863903
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||| |||||| |||||||||||  ||| ||||||||||||||||||||| ||||    
T  27863843 ttatcatgataagcacttgtgctataagctacaaa-taagttgtttatccaaacaggccctt 27863903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 31002953 - 31002994
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  31002953 cttatgctataagatgcaaattaagttgtttatccaaacagg 31002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 5620237 - 5620289
Alignment:
Q  264 atatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||| ||||||||   | ||||||||||||||||||||||||||||    
T  5620237 atatgcacttaggctataagaacttaattaagttgtttatccaaacagggcct 5620289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 32156927 - 32156891
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32156927 ttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 32791904 - 32791947
Alignment:
Q  274 atgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||    
T  32791904 atgctacaagctgcaaattaagttgtttacccaaacagggcctt 32791947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 46945824 - 46945769
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||| || |||| ||||||||||| ||| ||||||||||||||||||| |||||    
T  46945824 atgataagcgcttaagctataagctgcaaactaagttgtttatccaaacaaggcct 46945769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 48131294 - 48131228
Alignment:
Q  244 atacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||  |||||| |||||| ||||||||||| ||||||| ||| |||||||| |||||||||||    
T  48131294 atacataagcgcttat-atgataagcacttatgctgtaagctgcaaaataagttgtgtatccaaacag 48131228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 18350814 - 18350852
Alignment:
Q  275 tgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  18350814 tgctataatctgtaaattaagttgtttatccaaataggg 18350852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 43250800 - 43250870
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||||||  |||||||||| || |  |||| ||||| ||||| |||| |||||||||||||||||||    
T  43250800 cttatacataaaggcttatcatggtaagtgcttaagctatcagctgcaaataaagttgtttatccaaacag 43250870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 12110295 - 12110250
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||    
T  12110295 cttatgctataagttgcaaattaagctgtttatcgaaacagggcct 12110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 6824853 - 6824809
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||| || |||||||  ||||||||||||||||||||    
T  6824853 ttatgctataaggtgcaaattaaactgtttatccaaacagggcct 6824809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 7467945 - 7467973
Alignment:
Q  290 attaagttgtttatccaaacagggccttc 318  Q
    |||||||||||||||||||||||||||||    
T  7467945 attaagttgtttatccaaacagggccttc 7467973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 25827323 - 25827283
Alignment:
Q  273 tatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||||||||||| |||| ||||||||| |||||||    
T  25827323 tatgctataagctgtaaaataagctgtttatcctaacaggg 25827283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 34922879 - 34922839
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  34922879 gcacttatgctataagaggttaattaagttgtttatccaaa 34922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 44777104 - 44777148
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctg 286  Q
    |||| ||||| ||||||||||||||  ||||||||||||||||||    
T  44777104 ttatgcataagtgcttatcatgataaacacttatgctataagctg 44777148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 47302858 - 47302822
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaa 307  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  47302858 cttatgctacaagctgcaaattaagttgtttatccaa 47302822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 6593218 - 6593177
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6593218 ttatgctataagctgtaaattaagttgtttatccaaacaggg 6593177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 10771999 - 10772068
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||  || ||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||    
T  10771999 cttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaagttgtatattcaaaca 10772068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 42573900 - 42573971
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||||||  ||||||||||||| || || | ||||||||||| |||||||| ||||||||||||||||    
T  42573900 cttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatccaaacagg 42573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 8089735 - 8089673
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||||  |||||||||||| ||||  ||||||||||||||||||||||| |||||    
T  8089735 gcttatcatgataaacacttatgctatgagctacaaattaagttgtttatccaaacatggcct 8089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 9202883 - 9202958
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggccttcaattgtttcatat 331  Q
    ||||||||||||  ||||| |||||||||||| |||| ||| |||||||||||||||||||||  |||| |||||||    
T  9202883 cttatcatgataaacacttgtgctataagctgcaaat-aagatgtttatccaaacagggccttagattgattcatat 9202958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 29845050 - 29845092
Alignment:
Q  273 tatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  29845050 tatgctataagttgcaaattaagttgtttatccaaacagggcc 29845092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 39105413 - 39105363
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaat 291  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||| ||||    
T  39105413 cttatacataagcgcttatcatgataagcacttatgctataagctgcaaat 39105363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 19460508 - 19460572
Alignment:
Q  242 ttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaa 307  Q
    |||||||||| |||||||||||||| ||| || |||||||||||| ||| |||| |||||||||||    
T  19460508 ttatacataagtgcttatcatgataagcatttgtgctataagctgcaaa-taagctgtttatccaa 19460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 34590355 - 34590420
Alignment:
Q  247 cataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||| ||||||||||||||   |||||| |||||||||| ||| ||||| |||||||||||||||    
T  34590355 cataagtgcttatcatgataaatacttatcctataagctgcaaaataagtcgtttatccaaacagg 34590420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 38034155 - 38034228
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    ||||||||||| |||||| |||||||  || |||| || ||||||| |||||||| | ||||||||||||||||    
T  38034155 cttatacataagtgcttaacatgatacacatttatactgtaagctgcaaattaagctatttatccaaacagggc 38034228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 5559666 - 5559610
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||||  || ||||  ||||||||| |||||||||||||||||||||||    
T  5559666 gcttatcatgataaacatttattatataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 7319142 - 7319209
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    ||||| ||||| |||||||||||||| || ||| |||||||||||||||| |||| ||||||| |||||    
T  7319142 cttatgcataagtgcttatcatgataagcgcttgtgctataagctgtaaa-taagctgtttattcaaac 7319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 7907793 - 7907753
Alignment:
Q  277 ctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  7907793 ctataagttgtaaaataagttgtttatccaaacagggcctt 7907753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 30291195 - 30291135
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||| |   ||||||||||||||| ||||||||||| |||||||||||| ||||    
T  30291195 ttatcatgataagtgtttatgctataagctgcaaattaagttggttatccaaacagagcct 30291135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 32928016 - 32927972
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||    
T  32928016 cttatgatataagctgcaaattaagttgtttattcaaacagggcc 32927972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 38105014 - 38105058
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  38105014 cttacgctataagctgcaaaataagttgtttatccaaacagggcc 38105058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 41819530 - 41819486
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||    
T  41819530 ttatgctataagctgtaaattaagttgcttacccaaacatggcct 41819486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 14675035 - 14675094
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    ||||||||||||   | |||||| |||||||| |||||||||||||| ||||||||||||    
T  14675035 cttatcatgataactatttatgccataagctgcaaattaagttgtttgtccaaacagggc 14675094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 20982275 - 20982326
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||| |||||||||||||||||  | ||| ||||||||||||||||||||    
T  20982275 atgataagcacttatgctataagcacttaatgaagttgtttatccaaacagg 20982326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 28776924 - 28776850
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||   |||||||||||| |  |||| ||||||||||| |||| ||||||||||||||||||| ||||    
T  28776924 cttatacataagcacttatcatgataagtgcttaggctataagctgcaaat-aagttgtttatccaaacagagcct 28776850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 32372561 - 32372495
Alignment:
Q  243 tatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||  ||||||||||||| |  ||| |||||||||||| ||| |||||||||||||||||||    
T  32372561 tatacataagggcttatcatgataagtgcttgtgctataagctgcaaa-taagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 4620115 - 4620069
Alignment:
Q  262 tgatatgcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||| ||||||||||||||| ||||||||| |||||||||| ||||    
T  4620115 tgataagcacttatgctataaactgtaaattgagttgtttattcaaa 4620069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 11706792 - 11706742
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatc 304  Q
    |||||||||||||  | ||| |||||||||||| |||||||||||||||||    
T  11706792 gcttatcatgatagacgcttttgctataagctgcaaattaagttgtttatc 11706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 11715018 - 11715052
Alignment:
Q  279 ataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||| ||||||||||||||||||||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacaggg 11715052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 26516228 - 26516174
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    |||||| || ||||||||||||||  | ||||||||||||||||||||| |||||    
T  26516228 atgataagcgcttatgctataagcgcttaattaagttgtttatccaaactgggcc 26516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 40731216 - 40731174
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||    
T  40731216 gcacttatgctataagctgcaaaataatttgtttatccaaaca 40731174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 6725167 - 6725114
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    |||||| |||||||||||||||||  | |||||| || ||||||||||||||||    
T  6725167 atgataagcacttatgctataagcacttaattaaattatttatccaaacagggc 6725114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 316
Target Start/End: Complemental strand, 14955627 - 14955598
Alignment:
Q  287 taaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||||||||||||||||||||    
T  14955627 taaattaagttgtttatccaaacagggcct 14955598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 2568586 - 2568534
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaa 307  Q
    |||||||||||| | ||||| |||||||||||  || ||||||||||||||||    
T  2568586 cttatcatgataagtacttaagctataagctgctaactaagttgtttatccaa 2568534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 15905652 - 15905692
Alignment:
Q  276 gctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||| ||| |||||||||||||||||||||| |||||    
T  15905652 gctataagttgtgaattaagttgtttatccaaacacggcct 15905692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 16938001 - 16938068
Alignment:
Q  244 atacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    |||||||| ||||||||||||||  ||||| || |||||||| | || |||||||||| ||||||||||    
T  16938001 atacataagtgcttatcatgataaacacttgtgttataagct-tcaaataagttgtttgtccaaacagg 16938068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 26796382 - 26796338
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  26796382 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26796338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 26799900 - 26799856
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  26799900 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26799856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 26807450 - 26807406
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||    
T  26807450 cttatgcgataaggtgcaaaataagttgtttatccaaacagggcc 26807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 27104565 - 27104609
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||||  |||||| |||||||| ||||||||||||||    
T  27104565 ttatgctataagcgttaaattgagttgtttttccaaacagggcct 27104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 30585575 - 30585619
Alignment:
Q  269 cacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    ||||||| ||||||  || ||||||||||||||||||||||||||    
T  30585575 cacttatactataatttgcaaattaagttgtttatccaaacaggg 30585619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 40111215 - 40111171
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    |||||||||||| || |||||||| | ||||||||||||||||||    
T  40111215 ttatgctataagatgaaaattaaggtttttatccaaacagggcct 40111171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 2840294 - 2840239
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||    
T  2840294 cttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaaca 2840239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 2844981 - 2844926
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||    
T  2844981 cttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaaca 2844926  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 37353373 - 37353439
Alignment:
Q  245 tacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    |||||||  ||||||||| ||| ||| ||||||||||||||| |||| |||||||||||||||||||    
T  37353373 tacataagcgcttatcatcataagcatttatgctataagctgcaaatcaagttgtttatccaaacag 37353439  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 14956426 - 14956494
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||| |||||||||||||| ||  || |||||||||||| ||| |||||||||||||||||||    
T  14956426 cttatacataagtgcttatcatgataagcgattgtgctataagctgcaaa-taagttgtttatccaaaca 14956494  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 4389873 - 4389817
Alignment:
Q  261 atgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||| |||||| |||||||||||| ||| |||||| |||||||||||||||||||    
T  4389873 atgataagcacttctgctataagctgcaaaataagttatttatccaaacagggcctt 4389817  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 31751706 - 31751750
Alignment:
Q  270 acttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  31751706 acttatactataagctgcaaattaagttgtttatccaaacagggc 31751750  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 40981061 - 40980994
Alignment:
Q  249 taattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||||||| |||| || ||| |||||||||||| ||| |||| |||||||||||||||||||||    
T  40981061 taattgcttatcaagataagcgcttgtgctataagctgcaaa-taagctgtttatccaaacagggcctt 40980994  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 2833465 - 2833520
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||| ||||||||||||||||||| ||| ||||  |||||||||||||    
T  2833465 cttatcatgataagcacttatgctataagctgcaaaataagcagtttatccaaaca 2833520  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 44426535 - 44426577
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  44426535 gcacttatgctataagctgcaaattaagttgtttacccaaaca 44426577  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 29819026 - 29819080
Alignment:
Q  256 ttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||| || ||| |||||||||||| ||| ||||||||||||||||||||    
T  29819026 ttatcatgataagcccttttgctataagctgcaaa-taagttgtttatccaaacag 29819080  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 31118859 - 31118898
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  31118859 cttatgctataagctgcacattaagttgtttatccaaaca 31118898  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 31916517 - 31916462
Alignment:
Q  254 gcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaac 309  Q
    ||||||||||||| || ||||||| |||||||| |||| ||||||||||| |||||    
T  31916517 gcttatcatgataagcgcttatgccataagctgcaaatgaagttgtttattcaaac 31916462  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 40637424 - 40637486
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatc 304  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||||| ||| |||||| ||||||    
T  40637424 cttataaataagtgcttattatgataagcacttatgctataagctgcaaa-taagttttttatc 40637486  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 43730726 - 43730655
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagg 312  Q
    ||||||||||| | ||||||||||||  |  |||||||| |||||| |||||||||||||||| ||| ||||    
T  43730726 cttatacataagtacttatcatgataaacttttatgctaaaagctgcaaattaagttgtttattcaatcagg 43730655  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 40859839 - 40859884
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctg 286  Q
    |||||||||||  ||||||||||||| |||||| ||||||||||||    
T  40859839 cttatacataagcgcttatcatgataagcacttgtgctataagctg 40859884  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 43385650 - 43385609
Alignment:
Q  272 ttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||||||||| ||||||| || ||||||||||||||    
T  43385650 ttatgctataagctgttaattaagctggttatccaaacaggg 43385609  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 8499135 - 8499087
Alignment:
Q  262 tgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    ||||| || ||||| ||||||| || |||||||||||||||||||||||    
T  8499135 tgataagcgcttatactataagttgcaaattaagttgtttatccaaaca 8499087  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 12225027 - 12225063
Alignment:
Q  279 ataagctgtaaattaagttgtttatccaaacagggcc 315  Q
    ||||||| | |||||||||||||||||||||||||||    
T  12225027 ataagctcttaattaagttgtttatccaaacagggcc 12225063  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 15179093 - 15179049
Alignment:
Q  239 atcttatacataattgcttatcatgatatgcacttatgctataag 283  Q
    |||||||||||||  ||| |||||||||||||||| |||||||||    
T  15179093 atcttatacataagcgctcatcatgatatgcacttgtgctataag 15179049  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 26215445 - 26215374
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacaggg 313  Q
    |||||||||||  ||||||||| ||| || ||  |||||||||||| ||| |||||||||||| |||||||||    
T  26215445 cttatacataagcgcttatcattataagcgctcgtgctataagctg-aaaataagttgtttatacaaacaggg 26215374  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 30665654 - 30665694
Alignment:
Q  268 gcacttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    |||||||||||||||| || ||||||| |||||||||||||    
T  30665654 gcacttatgctataagatggaaattaaattgtttatccaaa 30665694  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 41442558 - 41442622
Alignment:
Q  243 tatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaa 307  Q
    ||||||||| | |||||||||||| |   ||||||||||||||  |||||||| |||||||||||    
T  41442558 tatacataagtacttatcatgataagtgtttatgctataagctaaaaattaagctgtttatccaa 41442622  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 42215454 - 42215494
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  42215454 cttattctataagctgtaaaataagctgtttatccaaacag 42215494  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 24626217 - 24626159
Alignment:
Q  258 atcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    ||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||    
T  24626217 atcatgataagcatttgtgctataagctgtaaat-aagttgtttatccaaacaggtcctt 24626159  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 264306 - 264245
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcctt 317  Q
    |||||||||||| |||||| |||||||||||| ||||| || |||| ||||||||||||||||    
T  264306 cttatcatgataagcacttgtgctataagctgcaaatt-agctgttaatccaaacagggcctt 264245  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 7946024 - 7946067
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaacagggc 314  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
T  7946024 cttatgctataagctacaaaataagttgtttatccaaacagggc 7946067  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 26550334 - 26550404
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacag 311  Q
    ||||||||||| |||||||||| | | |   || |||||||||||||||| || |||||||||||||||||    
T  26550334 cttatacataagtgcttatcattagaagttattgtgctataagctgtaaaatatgttgtttatccaaacag 26550404  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 30926477 - 30926432
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctg 286  Q
    ||||||| |||||||||||||||||| || ||| ||||||||||||    
T  30926477 cttatacttaattgcttatcatgataagcccttgtgctataagctg 30926432  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 32206141 - 32206210
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||| |||||| |||||||||||||| || |||||||||||  ||  |||||| ||||||||| ||||||    
T  32206141 cttacacataagtgcttatcatgataagcgcttatgctatatcctacaaattatgttgtttattcaaaca 32206210  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 34430655 - 34430587
Alignment:
Q  241 cttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||||||  || |||||||||| |||||| |||||||||||| ||| |||| |||||||| |||||    
T  34430655 cttatacataagcgcctatcatgataagcacttgtgctataagctgcaaa-taagatgtttatcgaaaca 34430587  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 35069487 - 35069427
Alignment:
Q  255 cttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaacagggcct 316  Q
    ||||||||||||  | ||| |||||||||||| |||| |||||||||||| |||||||||||    
T  35069487 cttatcatgataaacgcttgtgctataagctgcaaat-aagttgtttatcaaaacagggcct 35069427  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 58540 - 58475
Alignment:
Q  244 atacataattgcttatcatgatatgcacttatgctataagctgtaaattaagttgtttatccaaaca 310  Q
    |||||||| ||||||| |||| | |||||| |||| ||||||| |||| ||||||||||||||||||    
T  58540 atacataagtgcttattatgacaagcacttgtgctctaagctgcaaat-aagttgtttatccaaaca 58475  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 34062 - 34099
Alignment:
Q  271 cttatgctataagctgtaaattaagttgtttatccaaa 308  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  34062 cttatgctataagctcttaattaagttgtttatccaaa 34099  T

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