View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21395_low_5 (Length: 457)
Name: NF21395_low_5
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 208 - 440
Target Start/End: Complemental strand, 42801941 - 42801710
Alignment:
| Q |
208 |
taaaagaaaaaaggcaaaacaatatgaataatcatggaaggagtggtggtcaaaggcagagtcacgtattgttcctatcctgacctgtctcaatttgaat |
307 |
Q |
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| T |
42801941 |
taaaagaaaaaaagcaaaacaatatgaataatcatggaaggagtggtggtcaaaggcagagtcacgtattgttcctatcctgacctgtctcaatttgaat |
42801842 |
T |
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| Q |
308 |
taaaaattaaaaataatgttacttgactgtctaaactagataatgatattatttctatcttcaatagtaatagattgacacgccatctccatctccacat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42801841 |
taaaaattaaaaataatgttacttgactgtctaaactagataatgatattatttctatcttcaata-taatagattgacacgccatctccatctccacat |
42801743 |
T |
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| Q |
408 |
cacagtgagagtgagcgttatcagtgactcgat |
440 |
Q |
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| T |
42801742 |
cacagtgagagtgagcgttatcagtgactcgat |
42801710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 42802620 - 42802729
Alignment:
| Q |
105 |
tattaacaaattcagattgattattagtctatcagcaatgatgtctaccacttacttacaatctagctcaatttgcatatttgatagtcccaattgatca |
204 |
Q |
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| T |
42802620 |
tattaacaaattcagattgattattagtctatcagcaatgatgtctaccacttacttacaatctagctcaatttgcatatttgatagtcccaattgatca |
42802719 |
T |
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| Q |
205 |
agctaaaaga |
214 |
Q |
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| T |
42802720 |
agctaaaaga |
42802729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42802254 - 42802369
Alignment:
| Q |
1 |
tgacaccttctttaaacttgggcaatacaatttacttgnnnnnnn---aataaaacttgtcttaacatttggaaaatatcttaatagtgatctacatcaa |
97 |
Q |
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| T |
42802254 |
tgacaccttctttacacttgggcaatacaatttacttgttttttttttaataaaacttgtcttaacatttggaaaatatcgtaatagtgatctacatcaa |
42802353 |
T |
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| Q |
98 |
aacgtaatattaacaa |
113 |
Q |
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|||||||||||||||| |
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| T |
42802354 |
aacgtaatattaacaa |
42802369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 33508494 - 33508445
Alignment:
| Q |
158 |
acttacaatctagctcaatttgcatatttgatagtcccaattgatcaagc |
207 |
Q |
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| T |
33508494 |
acttacaatcaagctcaatttgcacctttgatagttccaattgatcaagc |
33508445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 8690353 - 8690312
Alignment:
| Q |
159 |
cttacaatctagctcaatttgcatatttgatagtcccaattg |
200 |
Q |
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| T |
8690353 |
cttacaatctagctcaaagtgcatatttgatattcccaattg |
8690312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 9042222 - 9042181
Alignment:
| Q |
159 |
cttacaatctagctcaatttgcatatttgatagtcccaattg |
200 |
Q |
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| T |
9042222 |
cttacaatctagctcaaagtgcatatttgatattcccaattg |
9042181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 34986506 - 34986546
Alignment:
| Q |
159 |
cttacaatctagctcaatttgcatatttgatagtcccaatt |
199 |
Q |
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| T |
34986506 |
cttacaatctagctcaatatgcacatttgaaagtcccaatt |
34986546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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