View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21395_low_6 (Length: 449)

Name: NF21395_low_6
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21395_low_6
NF21395_low_6
[»] chr7 (12 HSPs)
chr7 (1-91)||(27271182-27271272)
chr7 (1-91)||(27264281-27264369)
chr7 (372-432)||(27263967-27264027)
chr7 (372-432)||(27270860-27270920)
chr7 (149-199)||(27264172-27264222)
chr7 (149-199)||(27271065-27271115)
chr7 (237-290)||(27279709-27279762)
chr7 (234-302)||(27294492-27294558)
chr7 (239-301)||(27240632-27240694)
chr7 (234-302)||(27264077-27264139)
chr7 (234-302)||(27270970-27271032)
chr7 (325-412)||(27294390-27294475)
[»] chr1 (2 HSPs)
chr1 (236-293)||(14887470-14887527)
chr1 (243-294)||(14891505-14891556)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27271272 - 27271182
Alignment:
Q  1 tggttctcgctatatatctgatcggccatgtaattacactggtaaaaactacttggagtataaattatttgaatctattaattggttacgc 91  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27271272 tggttctagctatatatctgatcggccatgtaattaaactggtaaaaactacttggagtataaattatttgaatctattaattggttacgc 27271182  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27264369 - 27264281
Alignment:
Q  1 tggttctcgctatatatctgatcggccatgtaattacactggtaaaaactacttggagtataaattatttgaatctattaattggttacgc 91  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  27264369 tggttctagctatatatctgatcggccatgtaattaaactggtaaaaactactt--agtataaattatttgaatctattaattgcttacgc 27264281  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 27264027 - 27263967
Alignment:
Q  372 ggtacagcagtcgtctcccccaagttatattgtatatccatataagtgggaagggccctct 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27264027 ggtacagcagtcgtctcccccaagttatattgtatatccatataagtgggaagggccctct 27263967  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 27270920 - 27270860
Alignment:
Q  372 ggtacagcagtcgtctcccccaagttatattgtatatccatataagtgggaagggccctct 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27270920 ggtacagcagtcgtctcccccaagttatattgtatatccatataagtgggaagggccctct 27270860  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 27264222 - 27264172
Alignment:
Q  149 gactattactcttttttatgtttttgttagacgtcatttttatattttgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27264222 gactattactcttttttatgtttttgttagacgtcatttttatattttgac 27264172  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 27271115 - 27271065
Alignment:
Q  149 gactattactcttttttatgtttttgttagacgtcatttttatattttgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27271115 gactattactcttttttatgtttttgttagacgtcatttttatattttgac 27271065  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 27279762 - 27279709
Alignment:
Q  237 agactaaataagtttccttattttctataaagattaatgtgaaaatttactcaa 290  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27279762 agactaaataagtttccttattttctataaagactaatgtgaaaatttactcaa 27279709  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27294558 - 27294492
Alignment:
Q  234 cgaagactaaataagtttccttattttctataaagattaatgtgaaaatttactcaaatagtgaaatct 302  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||    
T  27294558 cgaagactaaataagtttccttattttctataa--actaatgtgaaaatttactcaaatagttaaatct 27294492  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 27240694 - 27240632
Alignment:
Q  239 actaaataagtttccttattttctataaagattaatgtgaaaatttactcaaatagtgaaatc 301  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  27240694 actaaataattttccttatttattataaagattaatgtgaaaatttactcaaatagtcaaatc 27240632  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27264139 - 27264077
Alignment:
Q  234 cgaagactaaataagtttccttattttctataaagattaatgtgaaaatttactcaaatagtgaaatct 302  Q
    |||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||||||||||    
T  27264139 cgaagactaaataagtttccttatttt------agactaatgtgaaaatttactcaaatagtgaaatct 27264077  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27271032 - 27270970
Alignment:
Q  234 cgaagactaaataagtttccttattttctataaagattaatgtgaaaatttactcaaatagtgaaatct 302  Q
    |||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||||||||||    
T  27271032 cgaagactaaataagtttccttatttt------agactaatgtgaaaatttactcaaatagtgaaatct 27270970  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 27294475 - 27294390
Alignment:
Q  325 tgaaatagccccaattgaacctccttcattggcttcccaagccaaaaggtacagcagtcgtctcccccaagttatattgtatatccat 412  Q
    ||||||||||||||||||| |||||||||| ||||| | ||||||  |||||| |||||||||  ||||| |||||||||||||||||    
T  27294475 tgaaatagccccaattgaatctccttcattagcttctc-agccaacgggtacaacagtcgtct-tcccaaattatattgtatatccat 27294390  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 14887470 - 14887527
Alignment:
Q  236 aagactaaataagtttccttattttctataaagattaatgtgaaaatttactcaaata 293  Q
    ||||||||||||||||||||||||| |||||||| |||  | ||||||||||||||||    
T  14887470 aagactaaataagtttccttattttttataaagactaagataaaaatttactcaaata 14887527  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 14891505 - 14891556
Alignment:
Q  243 aataagtttccttattttctataaagattaatgtgaaaatttactcaaatag 294  Q
    |||||||||||||  ||| |||||||| ||||||||||||||||| ||||||    
T  14891505 aataagtttccttggtttttataaagaataatgtgaaaatttacttaaatag 14891556  T

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