View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21395_low_7 (Length: 411)
Name: NF21395_low_7
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 26413650 - 26413272
Alignment:
| Q |
18 |
aatctgacgctctcgaaacacacactagattgcatgtactgtgttgcacataccagggttcctaacacaccaaagtggctgaataggctcagctcctata |
117 |
Q |
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| T |
26413650 |
aatctgacgctctcgaaacacac--tagattgcatgtactgtgttgcacataccagggttcctaacacaccaaagtggctgaataggctcagctcctata |
26413553 |
T |
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| Q |
118 |
cctctactcaccattctgcttcgccattcattcaatctatctgttgcctctgcgtatcgcttcagacccttttcatccctattgcccgaccacaacgact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
26413552 |
cctctactcaccattctgcttcgccattcattcaatctatctgttgcctctgcgtatcgcttcagacccttctcatccctattgcctgaccacaacgact |
26413453 |
T |
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| Q |
218 |
cagccattgcagaagttctaggccaaagccgcgaatccaaaacagtttcatcggcttgttctgaccacaacgctacctccccacctaaaaccaatttcgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26413452 |
cagccattgcagaagttctaggccaaagccgcgaatccaaaacagtttcatcggcttgttctgaccacaacgctacctccccacctaaaaccaatttcgc |
26413353 |
T |
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| Q |
318 |
ttcttcttcggtcagtccataagttatatcataattgtatatattttgccatgttttaaaaggtccacaccaagagccgcc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26413352 |
ttcttcttcggtcagtccataagttatatcataattgtatatattttgccatgttttaaaaggtccacaccaagagccgcc |
26413272 |
T |
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