View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21395_low_9 (Length: 321)
Name: NF21395_low_9
Description: NF21395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21395_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 28397462 - 28397780
Alignment:
| Q |
8 |
gaacacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaa---------atgtgaatcatggagatg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28397462 |
gaacacagacttagtcgaaattatgaatttttcgagagaatagatgctatgaattaattgatgtacttagaaaatgtggaaaatgtgaatcatggagatg |
28397561 |
T |
|
| Q |
99 |
tgtatgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28397562 |
tgtatgaggagactaggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatagagggagtttgttttcaagatttggc |
28397661 |
T |
|
| Q |
199 |
taattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaatcaatgaattagaatatattaattgatgttcataat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28397662 |
taattatattgatgggagaatgtaatttcaatgtgtaacagagtcaacttatgaattcatggaatcaatgaattagaatat----attgatgttcataat |
28397757 |
T |
|
| Q |
299 |
gcactcatagttcaatgtatgtg |
321 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
28397758 |
gcactcatagttcaatgtgtgtg |
28397780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 37667798 - 37667947
Alignment:
| Q |
116 |
aaataataagagaatattgtgatagggg----gatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| ||| ||||||||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37667798 |
aaataataggagaacattgtgataagggatatgatggtttgcgtgaggtcatatggata-ggagggagtttgttttcttgatttggataattgtattgat |
37667896 |
T |
|
| Q |
212 |
gggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
262 |
Q |
| |
|
| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
37667897 |
gtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
37667947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 43408466 - 43408556
Alignment:
| Q |
172 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
262 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
43408466 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
43408556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 337663 - 337539
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| ||| ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
|
|
| T |
337663 |
taggaagtaataagagaatactgtgagaggga-ataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
337565 |
T |
|
| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
|
|| |||| | ||||||||||||||| |
|
|
| T |
337564 |
ggaagaaactgatttcaatgtgtaac |
337539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 40458446 - 40458356
Alignment:
| Q |
172 |
ggagggagtttgttttcttgatttggctaattatattgatgggagaatgtaatttcaatgtgtaacagactcaacttatgaattcatggaa |
262 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||||||| ||| || |||| |||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
40458446 |
ggagggagttggttttcttgatttggataattgtattgatgtaagagagtgattttaatgtgtaactgaccaaactaatgaattcaaggaa |
40458356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 68902 - 68778
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||| |||||||||||||||| || |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
|
|
| T |
68902 |
taggaagtaataagagaatattgcgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
68804 |
T |
|
| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
|
|| |||| | ||||||||||||||| |
|
|
| T |
68803 |
ggaagaaactgatttcaatgtgtaac |
68778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 22077258 - 22077134
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| | | ||||||| || ||| ||||| ||| |||||||| |||| | ||||||||||||||||| | |
|
|
| T |
22077258 |
taggaagtaataagagaatattgtgagaggga-acaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggt |
22077160 |
T |
|
| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
|
|| |||| | ||||||||||||||| |
|
|
| T |
22077159 |
ggaagaaactgatttcaatgtgtaac |
22077134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 40447036 - 40446912
Alignment:
| Q |
112 |
taggaaataataagagaatattgtgatagggggatagtttgcgtgtgaccatatggagatggagggagtttgttttcttgatttggctaattatattgat |
211 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| | | ||||||| ||| | | ||||| ||| |||||||| |||| | ||||||||||||||||| | |
|
|
| T |
40447036 |
taggaagtaataagagaatactgtgagaggga-acaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggt |
40446938 |
T |
|
| Q |
212 |
gggagaatgtaatttcaatgtgtaac |
237 |
Q |
| |
|
|| |||| | ||||||||||||||| |
|
|
| T |
40446937 |
ggaagaaactgatttcaatgtgtaac |
40446912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University