View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21396_high_2 (Length: 289)
Name: NF21396_high_2
Description: NF21396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21396_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 33163158 - 33162898
Alignment:
| Q |
17 |
ttaaccgtcattatcattcaaactacgacaaaattgcaatcaagccacccaagtaattaaccatagacaattcaaattcacgcgattgaactagttgatt |
116 |
Q |
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| T |
33163158 |
ttaaccgtaattatcattcaaactacgacaaaattgcaatcaagccactcaagtaattaaccatagacaattcaaattcacgcgattgaactagctgatt |
33163059 |
T |
|
| Q |
117 |
cggttcaatttttaaacannnnnnnnnnnnn---gagagagaaatttgaaaacattgttattcaccaagaatccttgaatggcttctccaacaaagcaga |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163058 |
cggttcaatttttaaacattttttttttttttttgagagagaaatttgaaaacattgttattcaccaagaatccttgaatggcttctccaacaaagcaga |
33162959 |
T |
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| Q |
214 |
aagatacatttcctgaaattggggtcccttatcaagcttcttcccagtaacccacttaact |
274 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33162958 |
aaggtacatttcctgaaattggggtcccttatcaagcttcttcccagtaacccacttaact |
33162898 |
T |
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