View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21396_high_3 (Length: 267)

Name: NF21396_high_3
Description: NF21396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21396_high_3
NF21396_high_3
[»] chr8 (4 HSPs)
chr8 (68-257)||(36994093-36994282)
chr8 (68-204)||(37004209-37004345)
chr8 (17-67)||(36994339-36994389)
chr8 (21-67)||(37004402-37004448)
[»] chr4 (6 HSPs)
chr4 (108-204)||(22188770-22188866)
chr4 (17-67)||(13686859-13686909)
chr4 (17-67)||(13688811-13688861)
chr4 (17-67)||(22189229-22189279)
chr4 (69-105)||(22189135-22189171)
chr4 (205-255)||(28085634-28085684)
[»] chr1 (2 HSPs)
chr1 (204-255)||(19481219-19481270)
chr1 (205-255)||(482583-482632)
[»] chr3 (2 HSPs)
chr3 (219-256)||(53981817-53981854)
chr3 (204-256)||(33909480-33909532)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 68 - 257
Target Start/End: Complemental strand, 36994282 - 36994093
Alignment:
Q  68 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36994282 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 36994183  T
Q  168 ggtccccactataaaccaatatatagtcaaagaagagtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctttg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36994182 ggtccccactataaaccaatatatagtcaaagaagagtgttggaaattctgccccgagcgtgagggggtgtgtcggtaatcccacctttg 36994093  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 37004345 - 37004209
Alignment:
Q  68 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 167  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||| ||||| |||| | ||| | |||||||    
T  37004345 cgaaacaacacttctttgcattcaccctcaggacattgattcttaacagatcaagtactatcagaagatgatcaatgtattatcagaagacgggcttgag 37004246  T
Q  168 ggtccccactataaaccaatatatagtcaaagaagag 204  Q
    |||||| ||||||||||||| |||  |||||||||||    
T  37004245 ggtccctactataaaccaatctatcatcaaagaagag 37004209  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 36994389 - 36994339
Alignment:
Q  17 cacataaccctttaggatctttgggacaaggccactcttgcattactttaa 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36994389 cacataaccctttaggatctttgggacaaggccactcttgcattactttaa 36994339  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 37004448 - 37004402
Alignment:
Q  21 taaccctttaggatctttgggacaaggccactcttgcattactttaa 67  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||    
T  37004448 taaccctttaggatcttttggacaatgccagtcttgcattactttaa 37004402  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 22188866 - 22188770
Alignment:
Q  108 tctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgagggtccccactataaaccaatatatagtcaaagaagag 204  Q
    |||||||||| |  |||||| || || |||||| ||||||||||   ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  22188866 tctcaacacatcgtgtactaccaaaacatgatcaatgtactatcaaaagatgagcttgagggtccccactataaactaatatataatcaaagaagag 22188770  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 13686859 - 13686909
Alignment:
Q  17 cacataaccctttaggatctttgggacaaggccactcttgcattactttaa 67  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  13686859 cacataactctttaggatctttgggacaaggtcactcttgcattactttaa 13686909  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 13688811 - 13688861
Alignment:
Q  17 cacataaccctttaggatctttgggacaaggccactcttgcattactttaa 67  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  13688811 cacataactctttaggatctttgggacaaggtcactcttgcattactttaa 13688861  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 22189279 - 22189229
Alignment:
Q  17 cacataaccctttaggatctttgggacaaggccactcttgcattactttaa 67  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  22189279 cacataactctttaggatctttgagacaaggccactcttgcattactttaa 22189229  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 22189171 - 22189135
Alignment:
Q  69 gaaacaacacttctttgcattcaccctcaggacattg 105  Q
    |||||||||||||||||||||||||||||||||||||    
T  22189171 gaaacaacacttctttgcattcaccctcaggacattg 22189135  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 28085634 - 28085684
Alignment:
Q  205 tgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 255  Q
    |||||||||| | || |||||||||||||||||||| ||||||| ||||||    
T  28085634 tgttggaaatcccgctccgagcgtgaggggttgtgttggtaatctcacctt 28085684  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 19481219 - 19481270
Alignment:
Q  204 gtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 255  Q
    ||||||||||| | |||||||| |||||||| ||||| ||||||||||||||    
T  19481219 gtgttggaaatcccgccccgagtgtgagggggtgtgttggtaatcccacctt 19481270  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 482583 - 482632
Alignment:
Q  205 tgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 255  Q
    |||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  482583 tgttggaaatcccgccccgagcgtgagggggtgtgt-ggtaatcccacctt 482632  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 53981817 - 53981854
Alignment:
Q  219 ccccgagcgtgaggggttgtgtcggtaatcccaccttt 256  Q
    |||||||||||||||  |||||||||||||||||||||    
T  53981817 ccccgagcgtgagggtgtgtgtcggtaatcccaccttt 53981854  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 33909532 - 33909480
Alignment:
Q  204 gtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccaccttt 256  Q
    ||||||||||| || |||| || |||||||| ||||| |||||||||||||||    
T  33909532 gtgttggaaatcctcccccaagtgtgaggggatgtgttggtaatcccaccttt 33909480  T

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