View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21396_low_1 (Length: 409)

Name: NF21396_low_1
Description: NF21396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21396_low_1
NF21396_low_1
[»] chr1 (6 HSPs)
chr1 (275-390)||(2312301-2312419)
chr1 (51-212)||(12318374-12318533)
chr1 (30-165)||(2926647-2926780)
chr1 (354-390)||(2927117-2927153)
chr1 (121-206)||(9109275-9109360)
chr1 (241-292)||(3315688-3315737)
[»] chr5 (6 HSPs)
chr5 (30-212)||(316901-317083)
chr5 (121-226)||(10700486-10700591)
chr5 (36-212)||(10054666-10054840)
chr5 (115-195)||(8038418-8038498)
chr5 (116-212)||(8445916-8446008)
chr5 (33-90)||(14689398-14689455)
[»] chr6 (3 HSPs)
chr6 (117-212)||(5739845-5739940)
chr6 (117-172)||(11660825-11660880)
chr6 (149-212)||(17763245-17763312)
[»] chr8 (2 HSPs)
chr8 (25-212)||(11137157-11137343)
chr8 (115-197)||(7624813-7624894)
[»] chr3 (3 HSPs)
chr3 (51-212)||(20937815-20937974)
chr3 (30-104)||(26323027-26323101)
chr3 (115-211)||(5270592-5270689)
[»] chr4 (6 HSPs)
chr4 (121-212)||(41961624-41961715)
chr4 (30-106)||(38811145-38811221)
chr4 (57-164)||(3786126-3786231)
chr4 (121-206)||(6719781-6719866)
chr4 (55-106)||(33090042-33090093)
chr4 (137-173)||(28684697-28684733)
[»] scaffold0197 (1 HSPs)
scaffold0197 (30-164)||(1295-1427)
[»] chr2 (1 HSPs)
chr2 (115-164)||(16676449-16676498)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 275 - 390
Target Start/End: Complemental strand, 2312419 - 2312301
Alignment:
275 tatattcttgtggcatgagtataatgcttaattcaattgaaacaacttgagttatcat---ttaattaaaaccaggatggagcagtatgcagatcaacat 371  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
2312419 tatattcttgtggcatgagtataatgtttaattcaattgaaacaacttgagttatcatcatttaattaaaaccaggatggagcagtatgcagatcaacat 2312320  T
372 tttcatctagtggtctaaa 390  Q
    ||||||||||| |||||||    
2312319 tttcatctagtagtctaaa 2312301  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 12318533 - 12318374
Alignment:
51 taggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgtta 150  Q
    ||||||||||||| |||| ||||||||| |||||| ||||| |||| |||||||||        ||||||||| || ||||| ||||||  |||||| ||    
12318533 taggtaaacaattttttggtgttgttctcttttctttactccctttatcttgtttattcttt--ggttcaattatgattttgctttacaattggttgcta 12318436  T
151 gattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    | ||| ||||||||| |||||| |||  | || |||||||||||||| |||| |||||||||    
12318435 ggttaaatctagatctgttgttgttgcgtgtgcttattttggttattggttgccattgatac 12318374  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 2926647 - 2926780
Alignment:
30 taggtcattgttggacgaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggtt 129  Q
    ||||||||||||| ||  |  |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||        | || |||| |||||    
2926647 taggtcattgttgcaccgaactaggtaaacaattctttggtgttgttctttttactctactctctttatcttgttta--ttctttgatttaattatggtt 2926744  T
130 ttgttttacacctggttgttagattagatctagatc 165  Q
    || |||||||| || |||||||||||||| ||||||    
2926745 ttattttacacttgattgttagattagatatagatc 2926780  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 2927117 - 2927153
Alignment:
354 cagtatgcagatcaacattttcatctagtggtctaaa 390  Q
    ||||||||||||||||||||||||||||| |||||||    
2927117 cagtatgcagatcaacattttcatctagtagtctaaa 2927153  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 9109360 - 9109275
Alignment:
121 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcat 206  Q
    ||||||||| || || |||  |||||| ||| ||||||||||||| |||||||||  || || ||||||| |||||| ||||||||    
9109360 attgtggttatgcttcacagttggttgctagcttagatctagatctgttgttattacttgtggttattttagttattggttgtcat 9109275  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 3315688 - 3315737
Alignment:
241 taggcactaactcatccacattgcttggctgctatatattcttgtggcatga 292  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||| |||||    
3315688 taggcactaactcatcca--ttgcttgtctgctgtatattcttgtgacatga 3315737  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 316901 - 317083
Alignment:
30 taggtcattgttggac-gaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggt 128  Q
    |||||||||||||||| ||| || ||||||||||||||||| |||||||| ||||| ||||||||||| | |||||||        ||||||||||||||    
316901 taggtcattgttggaccgaactt-ggtaaacaattctttgt-gttgttctcttttccctactctctttattttgtttattcttt--ggttcaattgtggt 316996  T
129 tttgttttacacctggttgttagattagatctagatc---cgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    |||| ||||||| |||||| ||||| |||||||||||   ||||||| ||| || || |||||||||||||| ||||||| ||||||    
316997 tttgctttacacttggttgctagataagatctagatctgtcgttgttgttgcttgtggttattttggttattggttgtcactgatac 317083  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 10700591 - 10700486
Alignment:
121 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgataccaacccca 220  Q
    |||||||||||| ||||||| || ||||||||||| || ||||||| ||||||||| ||    |||||||||||||| |||||||||||||||  || ||    
10700591 attgtggttttgatttacacttgattgttagattaaatatagatccattgttattgcttgcagttattttggttattggttgtcattgatacccgcctca 10700492  T
221 cacatc 226  Q
    ||||||    
10700491 cacatc 10700486  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 10054840 - 10054666
Alignment:
36 attgttggacgaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttt 135  Q
    |||||||||| ||  ||||||||| | |||||| |||||||| ||||||| |||||| ||| |||||||||        | ||| |||||  ||||| ||    
10054840 attgttggaccaaactaggtaaacgactctttggtgttgttccattttctgtactctttttatcttgtttatttttt--gcttcgattgtaattttgctt 10054743  T
136 tacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    ||||| |||||| ||||||||||||||||  |||| | |||  | || |||||||| ||||||||||||||||||||    
10054742 tacacttggttgctagattagatctagatttgttgatgttgcatgtggttattttgattattagttgtcattgatac 10054666  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 8038418 - 8038498
Alignment:
115 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggtta 195  Q
    ||||| |||||||||||  ||||||| |||||| ||||||||||| |||||  ||||| ||| || ||||| |||||||||    
8038418 ggttcgattgtggtttttctttacacttggttgctagattagatcaagatctattgttgttgattgtgattgttttggtta 8038498  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 8445916 - 8446008
Alignment:
116 gttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    |||| |||| ||||||||||||||| ||||||    |||||||||||||| |||||| ||| || || |||| ||| |||| ||||| |||||||||    
8445916 gttcgattgcggttttgttttacacttggttg----attagatctagatctgttgttgttgcttgtggttatcttgattatcagttgccattgatac 8446008  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 14689455 - 14689398
Alignment:
33 gtcattgttggacgaagttaggtaaacaattctttgttgttgttctattttctctact 90  Q
    |||||||||||||  |  |||||||||||||||||||||||  ||| |||||||||||    
14689455 gtcattgttggactgaactaggtaaacaattctttgttgttactctcttttctctact 14689398  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 5739940 - 5739845
Alignment:
117 ttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    |||| ||||||||||| ||||||| |||||| |||||||||| |||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
5739940 ttcagttgtggttttgctttacacttggttgctagattagatttagatatgttgttgttgattatgattattttggttattagttatcattgatac 5739845  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 11660825 - 11660880
Alignment:
117 ttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgtt 172  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||||    
11660825 ttcaaatgtggttttgctttacacttggttgctagattagatctagatctgttgtt 11660880  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 17763245 - 17763312
Alignment:
149 tagattagatctagatccgttgttattgtttatgattattt-----tggttattagttgtcattgatac 212  Q
    ||||||||||||||||  ||||||||||||| |||||||||     |||||||| ||||||||||||||    
17763245 tagattagatctagatt-gttgttattgtttgtgattatttacatttggttattggttgtcattgatac 17763312  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 11137157 - 11137343
Alignment:
25 cataataggtcattgttggac-gaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaatt 123  Q
    |||| |||||||||||||||| ||| | ||||||| ||||||||| ||||||| | ||||||||||||||||| |||||||||        ||||| |||    
11137157 catagtaggtcattgttggaccgaactaaggtaaagaattctttgatgttgttttgttttctctactctctttatcttgttta--ttcattggttcgatt 11137254  T
124 gtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    ||||||||  |||| || || ||| |||||||||| |||||  ||| || ||| || || |||||||| ||||  ||||||||||||||    
11137255 gtggtttttctttatacttgattgctagattagatttagatatgttattgttgcttgtggttattttgattatcggttgtcattgatac 11137343  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 7624894 - 7624813
Alignment:
115 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttatt 197  Q
    ||||| |||||||||||  ||||||| |||||| ||| |||||||||||| ||||||| ||||||  |  |||||||||||||    
7624894 ggttcgattgtggttttactttacacatggttgctag-ttagatctagattcgttgttgttgtttgcggctattttggttatt 7624813  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 20937815 - 20937974
Alignment:
51 taggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgtta 150  Q
    ||||||||||||| |||  ||| ||||| ||||||||||||||||| |||||||||        ||||| |||||| ||||  ||||||| || ||  ||    
20937815 taggtaaacaattattttgtgtggttctcttttctctactctctttatcttgttta--ttatttggttcgattgtgattttactttacacttgattaata 20937912  T
151 gattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    ||||||||||||||  ||||||  || || |  |||||||| ||||||||||||||||||||    
20937913 gattagatctagatttgttgttgctgcttgtagttattttgcttattagttgtcattgatac 20937974  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 26323101 - 26323027
Alignment:
30 taggtcattgttggac-gaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtt 104  Q
    |||||||||||||||| |||||  |||||||||||||||| |||| |||| ||||||||||||||||| |||||||    
26323101 taggtcattgttggaccgaagtg-ggtaaacaattctttggtgttattctcttttctctactctctttatcttgtt 26323027  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 5270592 - 5270689
Alignment:
115 ggttcaattgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttat-gattattttggttattagttgtcattgata 211  Q
    ||||| ||||||||||||  |||||| |||||| |||||||||||||||||  ||||| ||| || | | || |||| |||||| |||||||||||||    
5270592 ggttcgattgtggttttgcattacacttggttgctagattagatctagatctattgttgttgcttgtggtttttttttgttattggttgtcattgata 5270689  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 41961624 - 41961715
Alignment:
121 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcattgatac 212  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||  ||||| ||| || |  || ||||||||||| ||||||||||||||    
41961624 attgtggttttgctttaaacctggttactagattagatctagatctattgttgttgcttgtagtttttttggttattggttgtcattgatac 41961715  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 38811221 - 38811145
Alignment:
30 taggtcattgttggacgaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgttta 106  Q
    ||||||||||||||||  |  | |||||||||||||| | ||||||||| ||||||||||||||||| | |||||||    
38811221 taggtcattgttggaccgaactgggtaaacaattcttcggtgttgttctcttttctctactctctttatattgttta 38811145  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 3786126 - 3786231
Alignment:
57 aacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggttttgttttacacctggttgttagattag 156  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||| |        ||||| |||||  ||||||||||||| |||||| || |||||    
3786126 aacaattatttggtgttgttctcttttctctactctctttatcttgttca--ttctttggttcgattgtaattttgttttacacttggttgctatattag 3786223  T
157 atctagat 164  Q
    ||||||||    
3786224 atctagat 3786231  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 6719781 - 6719866
Alignment:
121 attgtggttttgttttacacctggttgttagattagatctagatccgttgttattgtttatgattattttggttattagttgtcat 206  Q
    |||||||||||| ||| ||| |||||  ||||||||||||||||| |||||| |||  | ||| | ||||||||||| ||||||||    
6719781 attgtggttttgctttgcacttggtttctagattagatctagatctgttgtttttgcctgtgactgttttggttattggttgtcat 6719866  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 33090042 - 33090093
Alignment:
55 taaacaattctttgttgttgttctattttctctactctctttttcttgttta 106  Q
    ||||||||||||||  |||||||| |||||||| |||||||| |||||||||    
33090042 taaacaattctttgaagttgttctcttttctctgctctctttatcttgttta 33090093  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 28684733 - 28684697
Alignment:
137 acacctggttgttagattagatctagatccgttgtta 173  Q
    |||| |||||||||||||||||||| |||||||||||    
28684733 acacttggttgttagattagatctaaatccgttgtta 28684697  T

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Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 1427 - 1295
Alignment:
30 taggtcattgttggacgaagttaggtaaacaattctttgttgttgttctattttctctactctctttttcttgtttannnnnnnnggttcaattgtggtt 129  Q
    |||||||||||||||| || || |||||||||||||||| |||| |||| || ||| |||||||||| |||| ||||        ||||  |||||||||    
1427 taggtcattgttggaccaaattgggtaaacaattctttgatgtttttctcttctctttactctctttatcttattta--ttttttggtttgattgtggtt 1330  T
130 ttgttttacacctggttgttagattagatctagat 164  Q
    ||  ||||||| |||||  ||||||||||||||||    
1329 ttactttacacttggtttctagattagatctagat 1295  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 16676449 - 16676498
Alignment:
115 ggttcaattgtggttttgttttacacctggttgttagattagatctagat 164  Q
    ||||| |||||||||||| ||||||| | |||| ||||||||||||||||    
16676449 ggttcgattgtggttttgatttacactttgttgctagattagatctagat 16676498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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