View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21396_low_6 (Length: 203)
Name: NF21396_low_6
Description: NF21396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21396_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 30758487 - 30758625
Alignment:
| Q |
44 |
tacataatcgaatgatactttttgcctttcacaatatttcatttaatcctttggttcctcttcctcataggatttcagcaccatatccatatcaccatgt |
143 |
Q |
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| T |
30758487 |
tacataatcgaatgatactttttgcctttcacaatatttcatttaatcctttggttcctcttcctcataggatttcagcaccatatccatatcaccatgt |
30758586 |
T |
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| Q |
144 |
ttcttaaagaagcgagtgaggaactccttgtatttgtaa |
182 |
Q |
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| T |
30758587 |
ttcttaaagaagcgagtgagcaactccttatattcgtaa |
30758625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 30765939 - 30766077
Alignment:
| Q |
44 |
tacataatcgaatgatactttttgcctttcacaatatttcatttaatcctttggttcctcttcctcataggatttcagcaccatatccatatcaccatgt |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30765939 |
tacataatcgaatgatactttttgcctttcacaatatttcatttaatcctttggttcctcttcctcataggatttcagcaccatatccatatcaccatgt |
30766038 |
T |
|
| Q |
144 |
ttcttaaagaagcgagtgaggaactccttgtatttgtaa |
182 |
Q |
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| T |
30766039 |
ttcttaaagaagcgagtgagcaactccttatattcgtaa |
30766077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 30744504 - 30744626
Alignment:
| Q |
60 |
actttttgcctttcacaatatttcatttaatcctttggttcctcttcctcataggatttcagcaccatatccatatcaccatgtttcttaaagaagcgag |
159 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||| |||||| |
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| T |
30744504 |
actttttgcctttcacgttatttcatttaatcctttggttcctcttcctcataggatttcagcaccatgtccatgtcatattgtttctgaaagtagcgag |
30744603 |
T |
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| Q |
160 |
tgaggaactccttgtatttgtaa |
182 |
Q |
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||||||||||||||||||||||| |
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| T |
30744604 |
tgaggaactccttgtatttgtaa |
30744626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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