View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_high_14 (Length: 378)
Name: NF21397_high_14
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 2681079 - 2680743
Alignment:
| Q |
22 |
atgttaatggtttttctttaatcaatgaatggaatcatgatctcctttgatcaatgataaaaacatactttctgttgatgggacaaatatcaaattcttt |
121 |
Q |
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| T |
2681079 |
atgttaatggtttttctttaatcaatgaatggaatcatgatctcctttgatcaatgataaaaacatactttctgttgatgggacaaatatcaaattcttt |
2680980 |
T |
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| Q |
122 |
cataagaatataagatactgttacaatcaaatggttcacagtattgccttttgatgatgttttccagtaacnnnnnnntatacaattttcctataggcct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2680979 |
cataagaatataagatactgttacaatcaaatggttcacagtattgccttttgatgatgttttccagtaacaaaaaaatatacaattttcctataggcct |
2680880 |
T |
|
| Q |
222 |
tcgtgcaatgcacctatgaaatgctataaaatttgctagtaaatttcactgcaactatgtttagagaaacaaattcaatggaacctaatctcgtgcttcc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2680879 |
tcgtgcaatgcacctatgaaatgctataaaatttgctagtaaatttcactgcaactatgtttagagaaacaagttcaatggaacctaatctcgtgcttcc |
2680780 |
T |
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| Q |
322 |
aatagggtaatagtcatagtattgttgctaaaagtgt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2680779 |
aatagggtaatagtcatagtattgttgctaaaagtgt |
2680743 |
T |
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