View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21397_high_16 (Length: 349)
Name: NF21397_high_16
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 31 - 332
Target Start/End: Complemental strand, 19641092 - 19640791
Alignment:
| Q |
31 |
atttttaccttctcgaaaagaataagcaattgaagcaattcgtgtgtttgttatatacgatcacaggcaaatcgaccgggactgtgagcttctggaacag |
130 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19641092 |
atttttaccttctcgaaaagaataagaaattgaaccatgtcatgtgtttgttatatatgatcacaggcaaatcgaccgggactgtgagcttctggaacag |
19640993 |
T |
|
| Q |
131 |
gagggaattatggactatagtctactagttggcattcatttcaaagatatagcaccagaaggagatcttattccttcaggatctcatactccacttgatg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19640992 |
gagggaattatggactatagtctactagttggcattcatttcaaagatatagcaccagaaggagatcttattccttcaggatctcatactccactcgatg |
19640893 |
T |
|
| Q |
231 |
gtatttttcttatccataatagtatatatcttatcttaatttttgttcatcctcattaaattcctagaaaaacattttggatgttcaaatataggtgatt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
19640892 |
gtatttttcttatccataatagtatatatgttatcttaatttttgttcatcctcattaaattcctagaaaaatattttggatattcaaatttaggtgatt |
19640793 |
T |
|
| Q |
331 |
ca |
332 |
Q |
| |
|
|| |
|
|
| T |
19640792 |
ca |
19640791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19641527 - 19641561
Alignment:
| Q |
1 |
atgtaagccataaaactttgtcactagagcatttt |
35 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
19641527 |
atgtaatccataaaactttgtcactagagcatttt |
19641561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 35259167 - 35259229
Alignment:
| Q |
113 |
tgtgagcttctggaacaggagggaattatggactatagtctactagttggcattcatttcaaa |
175 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
35259167 |
tgtgagcttctagaacaagagggaattatggactatagtctgctacttggcattcatttcaaa |
35259229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University