View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_high_17 (Length: 344)
Name: NF21397_high_17
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 401776 - 402063
Alignment:
| Q |
1 |
cctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagaggtttgttccacctgaaagggttcgaagattgag |
100 |
Q |
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| T |
401776 |
cctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagaggtttgttccatctgaaagggttcgaagattgag |
401875 |
T |
|
| Q |
101 |
acctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaatacaatctcgattttattcccagttaaaccagcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
401876 |
acctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaatacaatctcgattttatccacagttaaaccagcc |
401975 |
T |
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| Q |
201 |
ggcttcaagcaattgagagagnnnnnnnnggtcttccaacacccttcaaacacagaaaccaattgtttgggttagcagcctcccagca |
288 |
Q |
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| T |
401976 |
ggcttcaagcaattgagagagttttttttggtcttccaacacccttcaaacacagaaaccaattgtttgggttagcagcctcccagca |
402063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 401517 - 401459
Alignment:
| Q |
285 |
agcaagatctactttagttaaacttctacaggtttgaactgtgcacctggtctatgatg |
343 |
Q |
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| T |
401517 |
agcaagatctactttagttaaacttctacaggtttgaactgtgcacctggtctatgatg |
401459 |
T |
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