View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21397_high_20 (Length: 312)
Name: NF21397_high_20
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 25118125 - 25117846
Alignment:
| Q |
18 |
tattacaagtcgtcgctggcaaacgattgagtgcgacattgaagcaaagctctaaagccttgcattgaagagggtgagagtgagattgaagacaagctgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25118125 |
tattacaagtcgtcgctggcaaacgattgagtgcgacattgaagcaaagctctaaagccttgcattgaagagggtgagagtgagattgaagacaagctgt |
25118026 |
T |
|
| Q |
118 |
tcttaataatccattggtaacactaagcatagtgtttgcaacatgaagtggtgttacttgagcatggccacgacgctttgctagggttattgcttgcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25118025 |
tcttaataatccattggtaacactaagcatcgtatttgcaacatgaagtggtgttacttgagcatggccacgacgctttgctagggttattgcttgcttt |
25117926 |
T |
|
| Q |
218 |
attatgtttgctgcttctgtggttaggccttgttgcaaagaacaatttcccgttctcatctttaggatattatgtacttct |
298 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25117925 |
attatgtttgcagcttctgttgttaggccttgttgcaaagaacagtttcccgttctcatctttagga-attatgtacttct |
25117846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 40588775 - 40588860
Alignment:
| Q |
38 |
aaacgattgagtgcgacattgaagcaaagctctaaagccttgcattgaagagggtgagagtgagattgaagacaagctgttcttaa |
123 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| | ||| |||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
40588775 |
aaacggttgagtgcaacattgaaacaaagctcaagagctttgcattgaagagggtgagagtgacattgaagacaagcttttcttaa |
40588860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University