View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_high_22 (Length: 302)

Name: NF21397_high_22
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_high_22
NF21397_high_22
[»] chr4 (46 HSPs)
chr4 (19-302)||(50555562-50555855)
chr4 (107-175)||(20639652-20639720)
chr4 (108-178)||(33836482-33836552)
chr4 (116-178)||(38755911-38755973)
chr4 (109-178)||(16408597-16408666)
chr4 (109-178)||(23501859-23501928)
chr4 (116-175)||(25388249-25388308)
chr4 (116-175)||(44363133-44363192)
chr4 (106-175)||(30352573-30352642)
chr4 (109-174)||(32484307-32484372)
chr4 (116-175)||(11394925-11394984)
chr4 (116-175)||(11404652-11404711)
chr4 (108-175)||(38786682-38786749)
chr4 (109-175)||(11054144-11054210)
chr4 (116-178)||(20225146-20225208)
chr4 (109-163)||(35532077-35532131)
chr4 (116-166)||(40553940-40553990)
chr4 (124-178)||(54730322-54730376)
chr4 (111-175)||(5648331-5648395)
chr4 (111-175)||(9832311-9832375)
chr4 (111-175)||(25629122-25629186)
chr4 (116-175)||(6430629-6430688)
chr4 (116-175)||(20225055-20225114)
chr4 (116-175)||(29207901-29207960)
chr4 (109-172)||(36816380-36816443)
chr4 (116-178)||(16911634-16911696)
chr4 (116-178)||(21647036-21647098)
chr4 (116-173)||(30690179-30690236)
chr4 (110-175)||(35567243-35567308)
chr4 (127-175)||(37494924-37494972)
chr4 (111-175)||(48598823-48598887)
chr4 (127-178)||(8820578-8820629)
chr4 (116-175)||(14983907-14983966)
chr4 (116-175)||(40915901-40915960)
chr4 (116-175)||(55766469-55766528)
chr4 (116-178)||(20405159-20405221)
chr4 (109-175)||(20908632-20908698)
chr4 (116-174)||(44718641-44718699)
chr4 (109-175)||(47528526-47528592)
chr4 (118-175)||(21489161-21489218)
chr4 (111-175)||(54175137-54175202)
chr4 (110-175)||(5306657-5306726)
chr4 (116-175)||(7909283-7909343)
chr4 (116-156)||(12666860-12666900)
chr4 (127-175)||(47482864-47482912)
chr4 (123-175)||(51865048-51865100)
[»] chr5 (26 HSPs)
chr5 (109-175)||(24448963-24449029)
chr5 (116-178)||(38879653-38879715)
chr5 (116-175)||(12575663-12575722)
chr5 (116-175)||(16957387-16957446)
chr5 (116-178)||(25622530-25622592)
chr5 (111-175)||(8169982-8170046)
chr5 (116-175)||(41014391-41014450)
chr5 (116-178)||(20135676-20135738)
chr5 (122-175)||(208936-208989)
chr5 (111-175)||(43334278-43334341)
chr5 (109-172)||(16028620-16028683)
chr5 (116-175)||(21784335-21784394)
chr5 (116-175)||(32703495-32703554)
chr5 (116-178)||(4619107-4619169)
chr5 (116-178)||(12006331-12006393)
chr5 (116-178)||(13801770-13801832)
chr5 (122-175)||(43574679-43574732)
chr5 (116-164)||(32354211-32354259)
chr5 (117-173)||(39801591-39801647)
chr5 (116-175)||(34154817-34154876)
chr5 (116-173)||(7368471-7368528)
chr5 (109-166)||(19093895-19093952)
chr5 (117-178)||(27328824-27328885)
chr5 (116-177)||(30877567-30877628)
chr5 (110-175)||(35710384-35710449)
chr5 (123-175)||(1850712-1850764)
[»] chr8 (36 HSPs)
chr8 (110-175)||(35261752-35261817)
chr8 (119-178)||(20284075-20284134)
chr8 (119-178)||(21070703-21070762)
chr8 (119-175)||(44530222-44530278)
chr8 (116-175)||(17823649-17823708)
chr8 (116-178)||(39460997-39461059)
chr8 (104-173)||(10857904-10857973)
chr8 (109-178)||(20869995-20870064)
chr8 (106-178)||(6760894-6760966)
chr8 (111-175)||(28817624-28817688)
chr8 (116-175)||(12625963-12626022)
chr8 (108-175)||(26102590-26102657)
chr8 (109-178)||(7136523-7136592)
chr8 (110-175)||(30454094-30454159)
chr8 (111-175)||(5135288-5135351)
chr8 (110-162)||(27468089-27468141)
chr8 (104-175)||(12670241-12670312)
chr8 (116-175)||(13160774-13160833)
chr8 (111-178)||(25250594-25250661)
chr8 (116-175)||(28407476-28407535)
chr8 (116-175)||(36720869-36720928)
chr8 (116-175)||(45071337-45071396)
chr8 (112-178)||(17250875-17250940)
chr8 (119-173)||(27507985-27508039)
chr8 (116-174)||(36486569-36486627)
chr8 (117-166)||(18595920-18595969)
chr8 (117-161)||(18164764-18164808)
chr8 (119-178)||(16225091-16225150)
chr8 (116-175)||(29877167-29877226)
chr8 (116-175)||(35107314-35107373)
chr8 (116-154)||(33867046-33867084)
chr8 (118-175)||(5689704-5689761)
chr8 (118-155)||(29521690-29521727)
chr8 (119-175)||(16013529-16013585)
chr8 (116-156)||(30962774-30962814)
chr8 (111-175)||(44742516-44742580)
[»] chr2 (33 HSPs)
chr2 (106-175)||(10546236-10546305)
chr2 (116-178)||(14530390-14530452)
chr2 (116-175)||(8455319-8455378)
chr2 (116-175)||(9671252-9671311)
chr2 (116-175)||(10543773-10543832)
chr2 (116-175)||(25079720-25079779)
chr2 (109-175)||(14444801-14444867)
chr2 (116-173)||(34080176-34080233)
chr2 (107-175)||(36871565-36871632)
chr2 (116-175)||(40762237-40762296)
chr2 (116-174)||(40579752-40579810)
chr2 (130-175)||(19185760-19185805)
chr2 (118-175)||(23488556-23488613)
chr2 (116-175)||(21779264-21779323)
chr2 (126-173)||(24890486-24890533)
chr2 (110-173)||(34766330-34766393)
chr2 (116-175)||(39914309-39914367)
chr2 (116-178)||(5841100-5841162)
chr2 (117-175)||(24859992-24860050)
chr2 (109-175)||(25249734-25249800)
chr2 (116-174)||(41409936-41409994)
chr2 (110-175)||(17668075-17668140)
chr2 (116-161)||(22371199-22371244)
chr2 (117-161)||(124918-124962)
chr2 (116-175)||(14544139-14544198)
chr2 (116-175)||(44643596-44643655)
chr2 (116-166)||(8575977-8576027)
chr2 (122-175)||(17380247-17380299)
chr2 (110-175)||(17623637-17623702)
chr2 (125-166)||(19615075-19615116)
chr2 (116-164)||(11514519-11514567)
chr2 (111-175)||(17896333-17896397)
chr2 (111-155)||(23052963-23053007)
[»] scaffold0057 (2 HSPs)
scaffold0057 (108-175)||(46904-46971)
scaffold0057 (109-175)||(24768-24834)
[»] chr7 (25 HSPs)
chr7 (116-175)||(11617591-11617650)
chr7 (120-175)||(35334823-35334878)
chr7 (109-175)||(7879711-7879777)
chr7 (116-173)||(45018926-45018983)
chr7 (111-178)||(42805596-42805663)
chr7 (109-175)||(32758332-32758398)
chr7 (109-175)||(42391096-42391162)
chr7 (109-178)||(43557544-43557614)
chr7 (116-173)||(18747562-18747619)
chr7 (110-175)||(27889313-27889378)
chr7 (120-175)||(2541026-2541081)
chr7 (116-175)||(18512456-18512515)
chr7 (116-175)||(21172012-21172071)
chr7 (116-175)||(48735125-48735184)
chr7 (109-175)||(34626204-34626270)
chr7 (109-155)||(36602540-36602586)
chr7 (116-178)||(47716531-47716593)
chr7 (116-171)||(11888414-11888469)
chr7 (116-175)||(31591112-31591171)
chr7 (116-175)||(40463949-40464008)
chr7 (117-175)||(1408530-1408588)
chr7 (109-175)||(38262192-38262258)
chr7 (111-175)||(27629707-27629771)
chr7 (116-175)||(29907493-29907550)
chr7 (116-164)||(42495865-42495913)
[»] chr6 (21 HSPs)
chr6 (111-178)||(29355853-29355920)
chr6 (111-175)||(13267798-13267862)
chr6 (116-178)||(12221917-12221980)
chr6 (108-178)||(12892079-12892149)
chr6 (111-176)||(6808467-6808532)
chr6 (109-175)||(1347035-1347101)
chr6 (109-178)||(9161194-9161263)
chr6 (117-178)||(14975094-14975155)
chr6 (117-166)||(30786378-30786427)
chr6 (116-175)||(1354760-1354819)
chr6 (116-175)||(12885986-12886045)
chr6 (111-169)||(25557802-25557860)
chr6 (110-178)||(2166407-2166475)
chr6 (110-178)||(2178040-2178108)
chr6 (111-166)||(26097240-26097295)
chr6 (116-166)||(13628259-13628309)
chr6 (109-175)||(18277189-18277255)
chr6 (116-174)||(23930130-23930188)
chr6 (109-175)||(34850609-34850675)
chr6 (116-165)||(10734908-10734957)
chr6 (110-175)||(24097650-24097715)
[»] chr3 (39 HSPs)
chr3 (116-178)||(13628793-13628855)
chr3 (110-175)||(40272809-40272874)
chr3 (111-175)||(54484786-54484850)
chr3 (116-166)||(10484619-10484669)
chr3 (108-178)||(13730597-13730667)
chr3 (116-175)||(10795426-10795485)
chr3 (116-175)||(25517173-25517232)
chr3 (116-175)||(45786217-45786276)
chr3 (116-178)||(353352-353414)
chr3 (109-175)||(24851297-24851363)
chr3 (116-178)||(29366723-29366785)
chr3 (109-178)||(46421030-46421100)
chr3 (104-178)||(49013465-49013538)
chr3 (109-175)||(52926215-52926281)
chr3 (111-175)||(516507-516571)
chr3 (123-175)||(829452-829504)
chr3 (111-175)||(5173717-5173781)
chr3 (109-161)||(47624208-47624260)
chr3 (116-175)||(22609860-22609919)
chr3 (116-175)||(39203609-39203668)
chr3 (110-156)||(4495673-4495719)
chr3 (109-175)||(26869801-26869867)
chr3 (110-175)||(15797315-15797380)
chr3 (116-173)||(30452892-30452949)
chr3 (109-154)||(40390357-40390402)
chr3 (111-175)||(1217183-1217247)
chr3 (108-156)||(6242280-6242328)
chr3 (116-164)||(14266375-14266423)
chr3 (111-175)||(34771362-34771426)
chr3 (116-156)||(54032574-54032614)
chr3 (116-178)||(8247689-8247752)
chr3 (116-175)||(22122920-22122979)
chr3 (116-175)||(31592942-31593001)
chr3 (120-178)||(14987051-14987109)
chr3 (117-175)||(44403559-44403617)
chr3 (123-173)||(45948848-45948898)
chr3 (108-166)||(51644075-51644133)
chr3 (129-177)||(33926176-33926224)
chr3 (111-175)||(53996563-53996627)
[»] chr1 (37 HSPs)
chr1 (109-175)||(45402192-45402258)
chr1 (116-175)||(4349734-4349793)
chr1 (109-175)||(18944741-18944808)
chr1 (116-178)||(10668320-10668382)
chr1 (109-175)||(50606499-50606565)
chr1 (122-175)||(20036317-20036369)
chr1 (110-175)||(46247950-46248015)
chr1 (110-175)||(46991900-46991965)
chr1 (109-173)||(1517307-1517371)
chr1 (116-175)||(27474376-27474435)
chr1 (116-175)||(35005221-35005280)
chr1 (109-175)||(31382210-31382276)
chr1 (105-175)||(38478275-38478344)
chr1 (111-175)||(42304205-42304269)
chr1 (116-175)||(10378738-10378797)
chr1 (116-175)||(15511151-15511210)
chr1 (116-175)||(34725101-34725160)
chr1 (117-175)||(6925196-6925254)
chr1 (116-178)||(20004093-20004155)
chr1 (116-178)||(30395729-30395791)
chr1 (118-175)||(4587568-4587625)
chr1 (111-175)||(18741955-18742019)
chr1 (107-175)||(30555211-30555279)
chr1 (111-175)||(35253185-35253249)
chr1 (116-175)||(6983814-6983873)
chr1 (108-175)||(8197139-8197206)
chr1 (120-175)||(14617134-14617189)
chr1 (116-175)||(19414533-19414592)
chr1 (108-175)||(19701667-19701734)
chr1 (116-175)||(19932756-19932815)
chr1 (108-175)||(23796561-23796628)
chr1 (108-175)||(41440597-41440664)
chr1 (137-175)||(11596608-11596646)
chr1 (111-157)||(24564448-24564494)
chr1 (122-175)||(35117774-35117828)
chr1 (120-165)||(9939570-9939615)
chr1 (109-173)||(43768237-43768301)
[»] scaffold0311 (1 HSPs)
scaffold0311 (118-175)||(10883-10940)
[»] scaffold0258 (1 HSPs)
scaffold0258 (111-175)||(13022-13086)
[»] scaffold0168 (1 HSPs)
scaffold0168 (111-175)||(30650-30714)
[»] scaffold0015 (1 HSPs)
scaffold0015 (116-175)||(48637-48696)
[»] scaffold0180 (1 HSPs)
scaffold0180 (109-175)||(24129-24195)
[»] scaffold0187 (2 HSPs)
scaffold0187 (116-171)||(10053-10108)
scaffold0187 (116-171)||(20381-20436)
[»] scaffold0018 (1 HSPs)
scaffold0018 (116-175)||(72870-72929)
[»] scaffold1176 (1 HSPs)
scaffold1176 (117-175)||(1591-1649)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 50555562 - 50555855
Alignment:
Q  19 ccaggtactctccactttcaataatatgatctcaaaacaaatttaccgatttcaaattatcaccaccaaatagatttctattttgttattaaaaaacggg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50555562 ccaggtactctccactttcaataatatgatctcaaaacaaatttaccgatttcaaattatcaccaccaaatagatttctattttgttattaaaaaaaggg 50555661  T
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattattttgaaattgtcttataaaaacgttttcagaata------- 211  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  50555662 cagcccggtgcactaaaactcctgcatacgcagggtccgggaaggggttccaccattattttgaaattgtcttataaaaacgttttcagaataaaataaa 50555761  T
Q  212 ---aaataaaataagaacacactcaaacaggcccgacaatatcatgctatttcaaaaggtggattagtagccttttccatggcttctatgtatt 302  Q
       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  50555762 atgaaataaaataagaacacactcaaacaggccctacaatatcatgctatttcaaaagggggattagtaaccttttccatggcttctatgtatt 50555855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 20639652 - 20639720
Alignment:
Q  107 ttaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  20639652 ttaaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 20639720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 33836482 - 33836552
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  33836482 taaaaaaagggcaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 33836552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 38755911 - 38755973
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  38755911 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 38755973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 16408597 - 16408666
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  16408597 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggttccaccattatt 16408666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 23501928 - 23501859
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||||||| ||||||||| |||||||||||    
T  23501928 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccattatt 23501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 25388308 - 25388249
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||    
T  25388308 gggcaacccggtgcactaaagctcatgcatacgcagggtccgggaaggggtcccaccatt 25388249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 44363133 - 44363192
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  44363133 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 44363192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 30352573 - 30352642
Alignment:
Q  106 attaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||| ||||||| |||||||||||| |||| |||||||||||||||  |||||||| ||||||||    
T  30352573 attaaaaaaagggcaacacggtgcactaaagctcccgcatacgcagggtccgagaaggggtcccaccatt 30352642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 32484372 - 32484307
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||||||| ||||||||| |||||||    
T  32484372 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccat 32484307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 11394984 - 11394925
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  11394984 gggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccatt 11394925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 11404711 - 11404652
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  11404711 gggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccatt 11404652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 38786749 - 38786682
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  38786749 taaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 38786682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 11054144 - 11054210
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||| | |||| ||||| ||||||||| |||||||||||| |||||    
T  11054144 aaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggttccgccatt 11054210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 20225208 - 20225146
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  20225208 gggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 20225146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 35532131 - 35532077
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaagg 163  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  35532131 aaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagg 35532077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 40553940 - 40553990
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  40553940 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggt 40553990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 54730376 - 54730322
Alignment:
Q  124 cggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||    
T  54730376 cggtgcactaaagctcccgcatacgcagggtccgggaaggggttccatcattatt 54730322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 5648395 - 5648331
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||| ||||||| || |||| ||||||||||||||| ||||||||| ||||||||    
T  5648395 aaaaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatt 5648331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 9832311 - 9832375
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||| |  ||||||||| ||||||||| ||||||||| ||||||||    
T  9832311 aaaaagggcaacccggtgcactagagttcctgcatatgcagggtccgggaaggggtcccaccatt 9832375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 25629186 - 25629122
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| |||| ||||| | ||||||| ||||||||| ||||||||    
T  25629186 aaaaagggcaacccggtgcactaaagctcccgcatatgtagggtccgggaaggggtcccaccatt 25629122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 6430629 - 6430688
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||| ||||| |||| ||||||||||||||| ||||| ||| ||||||||    
T  6430629 gggcaacccggtgcgctaaagctcccgcatacgcagggtccgggaagtggtcccaccatt 6430688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 20225114 - 20225055
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  20225114 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 20225055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 29207901 - 29207960
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  29207901 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 29207960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 36816380 - 36816443
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacc 172  Q
    |||||| |||||||||||| ||||||| |||| |||||| ||||||||||||||| || |||||    
T  36816380 aaaaaaagggcaacccggtacactaaagctcccgcatacacagggtccaggaaggagtcccacc 36816443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 16911696 - 16911634
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||||||  |||||| |||| || |||||||||||| ||||||||| |||||||||||    
T  16911696 gggcaacccggtaaactaaagctcccgcgtacgcagggtccgggaaggggtcccaccattatt 16911634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 21647098 - 21647036
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||| || |||||  ||||||||| |||||||||||    
T  21647098 gggcaacccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattatt 21647036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 30690179 - 30690236
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||| || ||||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  30690179 gggcagcctggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca 30690236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 35567308 - 35567243
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||||| |||||||||||||| |||| ||| ||||||||| | ||||||||| ||||||||    
T  35567308 aaaaaagggcagcccggtgcactaaagctcccgcagacgcagggttcgggaaggggtcccaccatt 35567243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 37494972 - 37494924
Alignment:
Q  127 tgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  37494972 tgcactaaagctcctgcatacgcagggtcccgaaaggggtcccaccatt 37494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 48598823 - 48598887
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||| | |||| ||||| ||| ||||| ||||||||| ||||||||    
T  48598823 aaaaagggcaacccggtgcactagagctccggcatatgcatggtccgggaaggggtcccaccatt 48598887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 8820629 - 8820578
Alignment:
Q  127 tgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||  ||||||||||||||  ||||||||| |||||||||||    
T  8820629 tgcactaaaactctcgcatacgcagggtctgggaaggggtcccaccattatt 8820578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 14983966 - 14983907
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||  ||| ||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  14983966 gggcaacatggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 14983907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 40915960 - 40915901
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||| || |||| ||||||||||||||| ||||||| | ||||||||    
T  40915960 gggcaatccggtgcactgaagctcccgcatacgcagggtccgggaagggctcccaccatt 40915901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 55766469 - 55766528
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||| |||  ||||||||| ||||| ||| ||||||||||||||    
T  55766469 gggcatcccggtgcactaaagctctcgcatacgcaaggtccgggatggggttccaccatt 55766528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 20405221 - 20405159
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||  ||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  20405221 gggcaacccaatgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 20405159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 20908632 - 20908698
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| ||||| ||  |||||||||| |||| ||||||||||||| | ||||||||| ||||||||    
T  20908632 aaaaaaagggcagccttgtgcactaaagctcccgcatacgcagggttcgggaaggggtcccaccatt 20908698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 44718699 - 44718641
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    |||||||||||||  ||||| |||| ||||||||||||||  ||||||||| |||||||    
T  44718699 gggcaacccggtgtgctaaagctcccgcatacgcagggtctgggaaggggtcccaccat 44718641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 47528526 - 47528592
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||| | ||||  ||||  |||||||| ||||||||| ||||||||    
T  47528526 aaaaaaagggcaacccggtgcactagagctcccacatattcagggtccgggaaggggtcccaccatt 47528592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 21489218 - 21489161
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||| ||| |||| ||||||||||||| | ||||||||| ||||||||    
T  21489218 gcaacccagtgcacgaaagctcccgcatacgcagggttcgggaaggggtcccaccatt 21489161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 54175202 - 54175137
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtcc-aggaaggggttccaccatt 175  Q
    |||| ||||| |||||||||||||| |||| ||||| |||||||||  ||||||||| ||||||||    
T  54175202 aaaaagggcagcccggtgcactaaagctcccgcatatgcagggtccggggaaggggtcccaccatt 54175137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 5306657 - 5306726
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctg----catacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||||||||||||||| |||| |||| |    |||||||||||||| ||||||||| ||||||||    
T  5306657 aaaaaagggcaacccggtgcattaaagctcccgtccacatacgcagggtccgggaaggggtcccaccatt 5306726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 7909283 - 7909343
Alignment:
Q  116 gggcaacccggtgcactaaaactcct-gcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||| ||||||||| ||||  ||||||||||||| | ||||||||| ||||||||    
T  7909283 gggcaacccgatgcactaaagctccccgcatacgcagggttcgggaaggggtcccaccatt 7909343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 12666860 - 12666900
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtcc 156  Q
    ||||||||||||| |||||| |||||||||||||| |||||    
T  12666860 gggcaacccggtgtactaaagctcctgcatacgcatggtcc 12666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 47482864 - 47482912
Alignment:
Q  127 tgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||| |||| ||||||||||||||| ||||||||| ||||||||    
T  47482864 tgcaccaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 47482912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 51865048 - 51865100
Alignment:
Q  123 ccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| |||| |||| ||||||||||||||| ||||||||  ||||||||    
T  51865048 ccggtgcaataaagctcccgcatacgcagggtccgggaaggggccccaccatt 51865100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 24449029 - 24448963
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  24449029 aaaaaaagggcaacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccatt 24448963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 38879715 - 38879653
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  38879715 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 38879653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 12575663 - 12575722
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  12575663 gggcagcccggtgcaccaaagctcctgcatacgcagggtccaggaaggggtcccaccatt 12575722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 16957446 - 16957387
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  16957446 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 16957387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 25622592 - 25622530
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  25622592 gggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 25622530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 8169982 - 8170046
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||    
T  8169982 aaaaagggcaacccggtgcactgaaactcccgcatatgcagggtccgggaaggggtcccaccatt 8170046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 41014450 - 41014391
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||| || |||||||||||||||| ||||||||    
T  41014450 gggcaacccggtgcactaaagctcccgcatatgcggggtccaggaaggggtcccaccatt 41014391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 20135738 - 20135676
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||||||||||| || |||||||||| || |||||| ||||||||| |||||||||||    
T  20135738 gggcaacccggtgcactgaagctcctgcatatgcggggtccgggaaggggtcccaccattatt 20135676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 208936 - 208989
Alignment:
Q  122 cccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  208936 cccggtgcactaaagctcttgcatacccagggtccaggaaggggtcccaccatt 208989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 43334341 - 43334278
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| |||| |||| |||||||||| ||||||||| ||||||||    
T  43334341 aaaaagggcaacccggtgcactaaagctcccgcat-cgcagggtccgggaaggggtcccaccatt 43334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 16028620 - 16028683
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacc 172  Q
    |||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| |||||    
T  16028620 aaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacc 16028683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 21784335 - 21784394
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  21784335 gggcaactcggtgcactaaacctcccgcatacgcagggtccggaaaggggtcccaccatt 21784394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 32703554 - 32703495
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  32703554 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 32703495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 4619107 - 4619169
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||  ||||| || |||||| ||||||||| |||||||||||    
T  4619107 gggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattatt 4619169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 12006331 - 12006393
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||||| |||| ||||| ||||||||  ||||||||| |||||||||||    
T  12006331 gggcaacacggtgcactaaagctcccgcataggcagggtctgggaaggggtcccaccattatt 12006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 13801770 - 13801832
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||  ||||| || |||||| ||||||||| |||||||||||    
T  13801770 gggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattatt 13801832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 43574732 - 43574679
Alignment:
Q  122 cccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  43574732 cccggtgctctaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 43574679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 32354259 - 32354211
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggg 164  Q
    |||||||||||||||||||| |||| |||||| |||||||| |||||||    
T  32354259 gggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggg 32354211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 39801647 - 39801591
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||||||||||||||||| |||| ||||||| ||||||  ||||||||| ||||||    
T  39801647 ggcaacccggtgcactaaagctcccgcatacgtagggtctgggaaggggtcccacca 39801591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 34154817 - 34154876
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | || | ||||| ||||||||| ||||||||| ||||||||    
T  34154817 gggcaacccggtgcactagagctaccgcatatgcagggtccgggaaggggtcccaccatt 34154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 7368528 - 7368471
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||||||||||||||| | ||||  |||| ||||||||| ||||||||| ||||||    
T  7368528 gggcaacccggtgcactagagctcccacatatgcagggtccgggaaggggtcccacca 7368471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 19093952 - 19093895
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||||| ||||| |||||||||||||| ||||  |||||||||||||| || ||||||    
T  19093952 aaaaaaagggcagcccggtgcactaaagctccaacatacgcagggtccgggtaggggt 19093895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 27328885 - 27328824
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||| ||| |||| |||| |||| ||||||||||||| | ||||||||| |||||||||||    
T  27328885 ggcaatccgatgcattaaagctcccgcatacgcagggttcgggaaggggtcccaccattatt 27328824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 30877567 - 30877628
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattat 177  Q
    |||||||||||||||||| | ||||  |||| ||||||||| ||||||||| ||||| ||||    
T  30877567 gggcaacccggtgcactagagctcccacatatgcagggtccgggaaggggtcccacctttat 30877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 35710449 - 35710384
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||| | |||| ||||| ||| | ||| ||||||||| ||||||||    
T  35710449 aaaaaagggcaacccggtgcactagagctcccgcatatgcatgttccgggaaggggtcccaccatt 35710384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1850764 - 1850712
Alignment:
Q  123 ccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||| || | |||| |||||||||||||||| ||| ||||||||    
T  1850764 ccggtgcactaaagcttccgcatccgcagggtccaggaagtggtcccaccatt 1850712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 35261817 - 35261752
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  35261817 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccatt 35261752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 20284075 - 20284134
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  20284075 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattatt 20284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 21070703 - 21070762
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  21070703 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattatt 21070762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 44530278 - 44530222
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  44530278 caacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccatt 44530222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 17823708 - 17823649
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||    
T  17823708 gggcaacccggtgcactaaagctcctgcatatgcagggttcgggaaggggttccaccatt 17823649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 39460997 - 39461059
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||||||||||||| |||||||||  ||||||||||    
T  39460997 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtctcaccattatt 39461059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 10857973 - 10857904
Alignment:
Q  104 ttattaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||| |||| |||||||||||||||||||| |||| ||||||||| ||||||||||| ||| ||||||    
T  10857973 ttattataaaaagggcaacccggtgcactaaagctcccgcatacgcaaggtccaggaagtggtcccacca 10857904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 20870064 - 20869995
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  20870064 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtcctggaaggggtcccaccattatt 20869995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 6760966 - 6760894
Alignment:
Q  106 attaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||| |||||||||||||||||||| |||| ||||| || ||||||  |||||||| |||||||||||    
T  6760966 attaaaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgagaaggggtcccaccattatt 6760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 28817624 - 28817688
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||| ||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  28817624 aaaaagggcaacccgatgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 28817688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 12626022 - 12625963
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||| ||||| ||||||||    
T  12626022 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggagggggtcccaccatt 12625963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 26102657 - 26102590
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  26102657 taaaaaaagggcaacccggtgcactagagctcccgcataagcagggtccgggaaggggtcccaccatt 26102590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 7136523 - 7136592
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| ||| |||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  7136523 aaaaaaagggtaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 7136592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 30454094 - 30454159
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  30454094 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 30454159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 5135288 - 5135351
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||| |||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||    
T  5135288 aaaaagggcagcccggtgcac-aaagctcctgcatacgcagggtccgggaaggggtcccaccatt 5135351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 27468089 - 27468141
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaag 162  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||| |||||    
T  27468089 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaag 27468141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 12670241 - 12670312
Alignment:
Q  104 ttattaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||| ||| |||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  12670241 ttataaaaaaaagggtaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 12670312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 13160833 - 13160774
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||| ||||| || |||| ||||||||||||||| ||||||||| ||||||||    
T  13160833 gggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatt 13160774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 25250661 - 25250594
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||| |||||||||||||||||||| |||| ||||| || |||| | ||||||||| |||||||||||    
T  25250661 aaaaagggcaacccggtgcactaaatctcccgcatatgcggggttcgggaaggggtcccaccattatt 25250594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 28407535 - 28407476
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||| |||| |||| ||||||| ||||||| ||||||||| ||||||||    
T  28407535 gggcaacccggtgcagtaaagctcccgcatacgtagggtccgggaaggggtcccaccatt 28407476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 36720928 - 36720869
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| ||||||||||| || | ||||||||||||||| ||||||||| ||||||||    
T  36720928 gggcaaccgggtgcactaaagcttccgcatacgcagggtccgggaaggggtcccaccatt 36720869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 45071396 - 45071337
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||| || |||| ||||||||| ||||| ||||||||| ||||||||    
T  45071396 gggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcccaccatt 45071337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 17250875 - 17250940
Alignment:
Q  112 aaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||| ||||||||| ||||| |||||||||||| | |||| |||| |||||||||||    
T  17250875 aaacgggcaacccg-tgcactaaagctccttcatacgcagggttcgggaaagggtcccaccattatt 17250940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 27508039 - 27507985
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||||||||||||||| |||| ||||||||||||| | ||||||||| ||||||    
T  27508039 caacccggtgcactaaagctcccgcatacgcagggttcgggaaggggtcccacca 27507985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 36486569 - 36486627
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||| |||||||    
T  36486569 gggcaacccggggcactaaagctcctgcatacgcaaggtccgggaagaggtcccaccat 36486627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 18595969 - 18595920
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    ||||||||| |||||||||||||| |||||| |||||||| |||||||||    
T  18595969 ggcaacccgatgcactaaaactcccgcatacacagggtccgggaaggggt 18595920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 18164764 - 18164808
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaa 161  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||    
T  18164764 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 18164808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 16225150 - 16225091
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||||||||||| |||| ||||| || |||||| ||||||| | |||||||||||    
T  16225150 caacccggtgcactaaagctcccgcatatgcggggtccgggaagggatcccaccattatt 16225091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 29877226 - 29877167
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| || ||||||||||  |||| ||||||||||||||| ||||||||| ||||||||    
T  29877226 gggcagcctggtgcactaacgctcccgcatacgcagggtccgggaaggggtcccaccatt 29877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 35107314 - 35107373
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| || | |||||| ||| |||| ||||||||| ||||||||    
T  35107314 gggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcccaccatt 35107373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 33867084 - 33867046
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggt 154  Q
    |||||||||||||||||||| || |||||||||||||||    
T  33867084 gggcaacccggtgcactaaagcttctgcatacgcagggt 33867046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 5689761 - 5689704
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||||||| ||||  |||||||| ||| | ||||||||||||||||||    
T  5689761 gcaaaccggtgcactaaagctcccacatacgcatggttcgggaaggggttccaccatt 5689704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 29521690 - 29521727
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtc 155  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  29521690 gcaacccggtgcactaaagctcccgcatacgcagggtc 29521727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 16013585 - 16013529
Alignment:
Q  119 caacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||| |||| ||||| ||||||||  |||||||||  |||||||    
T  16013585 caacccggtgcactaaagctcccgcataggcagggtctgggaaggggtcgcaccatt 16013529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 30962774 - 30962814
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtcc 156  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  30962774 gggcaacccggttcactaaatctcccgcatacgcagggtcc 30962814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 44742516 - 44742580
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||| |||||||||||||  |||| |||| || |||||||| |||||||| ||||||||    
T  44742516 aaaaggggcaccccggtgcactaatgctcccgcatccgtagggtccaagaaggggtcccaccatt 44742580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 10546305 - 10546236
Alignment:
Q  106 attaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  10546305 attaaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 10546236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 14530452 - 14530390
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  14530452 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 14530390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 8455319 - 8455378
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  8455319 gggcaacccggtgcactaaagctccggcatacgcagggtccgggaaggggtcccaccatt 8455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 9671311 - 9671252
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  9671311 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 9671252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 10543832 - 10543773
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  10543832 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 10543773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 25079720 - 25079779
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||    
T  25079720 gggcaacccggtgcactaaagctcttgcatacgcagggtccgggaaggggtcccaccatt 25079779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 14444867 - 14444801
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||| ||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  14444867 aaaaaaagggcaacctggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 14444801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 34080233 - 34080176
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||    
T  34080233 gggcaacccggtgcactaaaactcccgcatatgcagggtccgggaaggggtcccacca 34080176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 36871632 - 36871565
Alignment:
Q  107 ttaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| |||||||||||||||||||| |||| ||||||||| ||||| ||||||||| ||||||||    
T  36871632 ttaaaaaaagggcaacccggtgcactaaagctcccgcatacgca-ggtccgggaaggggtcccaccatt 36871565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 40762237 - 40762296
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||| |||| ||||||||    
T  40762237 gggcaacccggtgcactaaagctcccacatacgcagggtccaggaaagggtcccaccatt 40762296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 40579752 - 40579810
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    |||||||||||||||||||| |||| |||||| |||||||| ||||||||| |||||||    
T  40579752 gggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcccaccat 40579810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 19185760 - 19185805
Alignment:
Q  130 actaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  19185760 actaaagctcccgcatacgcagggtccaggaaggggttccaccatt 19185805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 23488613 - 23488556
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||    
T  23488613 gcaacccggtgcactaaagctctcgcatacgcagggtccgggaaggggtcccaccatt 23488556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 21779264 - 21779323
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  21779264 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 21779323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 24890533 - 24890486
Alignment:
Q  126 gtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  24890533 gtgcactaaagctcctgcatacgcagggtccgggaaggggtcccacca 24890486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 34766393 - 34766330
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||| ||| |||||| ||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  34766393 aaaaaagggaaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca 34766330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 39914309 - 39914367
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||    
T  39914309 gggcaacccgatgcactaaagctcccgcatacgcagggt-caggaaggggtcccaccatt 39914367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 5841162 - 5841100
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  5841162 gggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 5841100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 24859992 - 24860050
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||||||||||||| |||| |||||||||||||||  |||||||||| ||||||    
T  24859992 ggcaatccggtgcactaaagctcccgcatacgcagggtccgagaaggggttctaccatt 24860050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 25249734 - 25249800
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||| | ||||||| | ||||||||    
T  25249734 aaaaaaagggcaacccggtgcactaaagctcacgcatacgcagggttcgggaagggatcccaccatt 25249800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 41409994 - 41409936
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    ||||||||||||||||| || |||| ||||| ||||||||| ||||||||| |||||||    
T  41409994 gggcaacccggtgcactgaagctcccgcatatgcagggtccgggaaggggtcccaccat 41409936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 17668140 - 17668075
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||||| ||||   ||||||||||| |  |||||||||||||||||    
T  17668140 aaaaaagggcaacccggtgcactaaagctcccatatacgcagggttcgagaaggggttccaccatt 17668075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 22371244 - 22371199
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaa 161  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||    
T  22371244 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 22371199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 124918 - 124962
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaa 161  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||    
T  124918 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 124962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 14544198 - 14544139
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||  ||||||||||| |||| ||||||||||||||| ||||||||| | ||||||    
T  14544198 gggcaacttggtgcactaaagctcccgcatacgcagggtcccggaaggggtccgaccatt 14544139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 44643655 - 44643596
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||  |||| ||||||||||||||  ||||||||| ||||||||    
T  44643655 gggcagcccggtgcactaaggctcccgcatacgcagggtctgggaaggggtcccaccatt 44643596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 8576027 - 8575977
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||||||| ||||||||||| ||||  |||||||||||||| |||||||||    
T  8576027 gggcaacctggtgcactaaagctcccacatacgcagggtccgggaaggggt 8575977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 17380247 - 17380299
Alignment:
Q  122 cccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||| ||| |||| |||| |||||||||||||||||||||||| ||||    
T  17380247 cccggtgcac-aaagctcccgcatccgcagggtccaggaaggggttccatcatt 17380299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 17623702 - 17623637
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||||||||| |||||||||| || |  |||||||||| | | ||||||||||||||||||    
T  17623702 aaaaaagggcaacccagtgcactaaagcttccacatacgcaggattcgggaaggggttccaccatt 17623637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 19615116 - 19615075
Alignment:
Q  125 ggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    ||||||||||| |||||||||||||||||| | |||||||||    
T  19615116 ggtgcactaaagctcctgcatacgcagggttcgggaaggggt 19615075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 11514567 - 11514519
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggg 164  Q
    |||||| ||||||||||||| |||| ||||||||||||||  |||||||    
T  11514567 gggcaatccggtgcactaaagctcccgcatacgcagggtctgggaaggg 11514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 17896397 - 17896333
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||| || ||||||||| ||||  ||||||||||||||  |||||||| ||||||||    
T  17896397 aaaaagggcaactcgatgcactaaagctcccacatacgcagggtccgagaaggggtcccaccatt 17896333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 23052963 - 23053007
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtc 155  Q
    |||| ||||| |||||||||| ||| |||||||||||||||||||    
T  23052963 aaaaagggcagcccggtgcacaaaagctcctgcatacgcagggtc 23053007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 46971 - 46904
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  46971 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 46904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 24768 - 24834
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||| | ||||||||| |||| ||||||||||||| | ||||||||| ||||||||    
T  24768 aaaaaaagggcaaccggctgcactaaagctcccgcatacgcagggttcgggaaggggtcccaccatt 24834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 11617591 - 11617650
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  11617591 gggcaacccggtgcactaaaggtcctgcatacgcagggtccaggaaggggtcccaccatt 11617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 35334823 - 35334878
Alignment:
Q  120 aacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  35334823 aacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccatt 35334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 7879777 - 7879711
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| ||||||||||||||||| || |||| ||||||||||||||| ||||||||| ||||||||    
T  7879777 aaaaaaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatt 7879711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 45018926 - 45018983
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  45018926 gggcaacctggtgcactaaagctcccgcatacgcagggtccgggaaggggttccacca 45018983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 42805663 - 42805596
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||| |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  42805663 aaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 42805596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 32758398 - 32758332
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  32758398 aaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 32758332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 42391096 - 42391162
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  42391096 aaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 42391162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 43557614 - 43557544
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaa-ctcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| ||||||||||||||||||||| |||| |||||||||| |||| ||| ||||| |||||||||||    
T  43557614 aaaaaaagggcaacccggtgcactaaaagctcccgcatacgcagagtccgggagggggtcccaccattatt 43557544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 18747619 - 18747562
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||| |||||||||||||| |||| ||||||||||||| ||||||||||| ||||||    
T  18747619 gggcagcccggtgcactaaagctcccgcatacgcagggttcaggaaggggtcccacca 18747562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 27889313 - 27889378
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| ||||||||||||| || ||| |||| ||||||||||||||| ||||||||| ||||||||    
T  27889313 aaaaaagggcaacccggtgtaccaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 27889378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 2541026 - 2541081
Alignment:
Q  120 aacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||| |||| |||||||||||| || ||||||||| ||||||||    
T  2541026 aacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccatt 2541081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 18512456 - 18512515
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||| |||||| ||| |||| ||||||||||||||| ||||||||| ||||||||    
T  18512456 gggcaacccagtgcaccaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 18512515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 21172012 - 21172071
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  21172012 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 21172071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 48735125 - 48735184
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  48735125 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 48735184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 34626204 - 34626270
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||| || |||||| |||| ||||||||||||||| ||||||| | ||||||||    
T  34626204 aaaaaaagggcaacccgatgaactaaagctcccgcatacgcagggtccgggaagggatcccaccatt 34626270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 36602586 - 36602540
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtc 155  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  36602586 aaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtc 36602540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 47716593 - 47716531
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||| ||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  47716593 gggcaacccggtgcaccaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 47716531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 11888469 - 11888414
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccac 171  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| ||||||| ||||    
T  11888469 gggcaacccagtgcactgaagctcctgcatacacagggtccagaaaggggtcccac 11888414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 31591112 - 31591171
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||| ||||| ||||||||| ||||||||    
T  31591112 gggcaacccggtgcactagagctcccgcatatgcaaggtccgggaaggggtcccaccatt 31591171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 40464008 - 40463949
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| ||||||||| || |||| |||||||||||||||  |||||||| ||||||||    
T  40464008 gggcaactcggtgcactgaagctcccgcatacgcagggtccgagaaggggtcccaccatt 40463949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 1408588 - 1408530
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||| ||||||  | ||||||||||||||||| ||||||||| ||||||||    
T  1408588 ggcaatccggtgaactaaagattctgcatacgcagggtccgggaaggggtcccaccatt 1408530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 38262192 - 38262258
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||| ||||||||||||| |||| |||||||||| || | ||||||||| ||| ||||    
T  38262192 aaaaaaagggcaatccggtgcactaaagctcccgcatacgcagtgttcgggaaggggtcccatcatt 38262258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 27629771 - 27629707
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||||||||||| || || | ||||| |||||| || ||||||||| ||||||||    
T  27629771 aaaaagggcaacccggtgcactgaagctaccgcatatgcagggcccgggaaggggtcccaccatt 27629707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 29907550 - 29907493
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| |||||  |||||||| ||| ||||| ||||||||    
T  29907550 gggcaacccggtgcactaaagctcccgcata--cagggtccgggatggggtcccaccatt 29907493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 42495865 - 42495913
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggg 164  Q
    |||||||  ||||||||||| |||| ||||||||||||||| |||||||    
T  42495865 gggcaacggggtgcactaaagctcccgcatacgcagggtccgggaaggg 42495913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 29355853 - 29355920
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  29355853 aaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 29355920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 13267862 - 13267798
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||    
T  13267862 aaaaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatt 13267798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 12221917 - 12221980
Alignment:
Q  116 gggcaacccggtgcactaaaa-ctcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  12221917 gggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 12221980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 12892149 - 12892079
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  12892149 taaaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 12892079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 6808532 - 6808467
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatta 176  Q
    |||| |||||||||||||||||||| |||| |||||| |||||||| ||||||||| |||||||||    
T  6808532 aaaaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcccaccatta 6808467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 1347101 - 1347035
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  1347101 aaaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 1347035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 9161263 - 9161194
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| |||||||| ||||||||||| || | |||||||||||||||  |||||||| |||||||||||    
T  9161263 aaaaaaagggcaacctggtgcactaaagcttccgcatacgcagggtccgagaaggggtcccaccattatt 9161194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 14975094 - 14975155
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||||||| ||||| || |||| | ||||||||| |||||||||||    
T  14975094 ggcaacccggtgcactaaaactcccgcatatgcggggttcgggaaggggtcccaccattatt 14975155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 30786378 - 30786427
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  30786378 ggcaacccggtgcactaaagctcccgcatacgcacggtccaggaaggggt 30786427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 1354760 - 1354819
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  1354760 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 1354819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 12886045 - 12885986
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| ||||  |||||||||||||  ||||||||| ||||||||    
T  12886045 gggcaacccggtgcactaaagctcccacatacgcagggtctgggaaggggtcccaccatt 12885986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 25557860 - 25557802
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttcc 169  Q
    |||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||    
T  25557860 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggttcc 25557802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 2166407 - 2166475
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||| |||||||||||||||||||| |||| | |||   ||||||| ||||||||| |||||||||||    
T  2166407 aaaaaagggcaacccggtgcactaaagctcccgaatatatagggtccgggaaggggtcccaccattatt 2166475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 2178040 - 2178108
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||| |||||||||||||||||||| |||| | |||   ||||||| ||||||||| |||||||||||    
T  2178040 aaaaaagggcaacccggtgcactaaagctcccgaatatatagggtccgggaaggggtcccaccattatt 2178108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 26097295 - 26097240
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||| |||||||||||||||||| | |||| ||||| ||||||||| |||||||||    
T  26097295 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggt 26097240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 13628259 - 13628309
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||||| || ||||||||||||||| |||||||||| ||| ||||||||||    
T  13628259 gggcaatccagtgcactaaaactcccgcatacgcagagtctaggaaggggt 13628309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 18277189 - 18277255
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| || |||||||||||| |||| |||| ||||||| || ||| |||||||||| ||||||||    
T  18277189 aaaaaaaggacaacccggtgcagtaaagctcccgcatacgtagagtctaggaaggggtcccaccatt 18277255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 23930130 - 23930188
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccat 174  Q
    ||||||| |||||||||||| |||| ||||| |||||||||  |||||||| |||||||    
T  23930130 gggcaactcggtgcactaaagctcccgcataagcagggtccgtgaaggggtcccaccat 23930188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 34850675 - 34850609
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| || ||||||| ||||||||| |||||  ||||||||| | | ||||||||||||||||||    
T  34850675 aaaaaaaggacaacccgatgcactaaagctcctatatacgcaggattcgggaaggggttccaccatt 34850609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 10734908 - 10734957
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaagggg 165  Q
    ||||| ||||||| |||||| |||| ||||||||||||||| ||||||||    
T  10734908 gggcagcccggtggactaaagctcccgcatacgcagggtccgggaagggg 10734957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 24097715 - 24097650
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||| ||  ||||||| || | ||||||||||||||| ||||||||| ||||||||    
T  24097715 aaaaaagggcaacctgggacactaaagcttccgcatacgcagggtccgggaaggggtcccaccatt 24097650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 13628793 - 13628855
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  13628793 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 13628855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 40272809 - 40272874
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  40272809 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 40272874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 54484850 - 54484786
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  54484850 aaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 54484786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 10484619 - 10484669
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  10484619 gggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggt 10484669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 13730597 - 13730667
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  13730597 taaaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 13730667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 10795426 - 10795485
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| |||||||| || |||| ||||||||||||||||||||||||| ||||||||    
T  10795426 gggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatt 10795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 25517173 - 25517232
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||| ||| ||||||||| ||||||||    
T  25517173 gggcaacccggtgcactaaagctccagcatacgcaggatccgggaaggggtcccaccatt 25517232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 45786217 - 45786276
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| |||| |||||||||| ||||||||| ||||||||    
T  45786217 gggcaacccggtgcactaaagctccagcattcgcagggtccgggaaggggtcccaccatt 45786276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 353352 - 353414
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  353352 gggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 353414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 24851297 - 24851363
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||||||||| ||||||||    
T  24851297 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcaggatccgggaaggggtcccaccatt 24851363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 29366723 - 29366785
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||| |||||||||| ||||  |||||||||||||| ||||||||| |||||||||||    
T  29366723 gggcaacccagtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattatt 29366785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 46421030 - 46421100
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaa-ctcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||| |||||| |||||||||| ||| |||| ||||||||||||||| ||||||||| |||||||||||    
T  46421030 aaaaaaagggcaaaccggtgcacttaaagctcccgcatacgcagggtccgggaaggggtcccaccattatt 46421100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 49013465 - 49013538
Alignment:
Q  104 ttattaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||||| |||||||||||||||||||| |||| || || || |||||| ||||||||| |||||||||||    
T  49013465 ttattaaaaaa-gggcaacccggtgcactaaagctcccgcgtatgcggggtccgggaaggggtcccaccattatt 49013538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 52926215 - 52926281
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||||| |||||| || ||||||||    
T  52926215 aaaaaaagggcaacccggtgcgctaaagctcccgcatacgcagggtccgggaaggtgtcccaccatt 52926281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 516571 - 516507
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||  ||||||||| || |||||    
T  516571 aaaaagggcaacccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccatt 516507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 829452 - 829504
Alignment:
Q  123 ccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||| |||||||||||||||||| | ||||||||| ||||||||    
T  829452 ccggtgcactaaagctcctgcatacgcagggttcgggaaggggtcccaccatt 829504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 5173717 - 5173781
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| |||| ||||||||| ||||| ||||||||  ||||||||    
T  5173717 aaaaagggcaacccggtgcactaaagctcccgcatacgcaaggtccgggaaggggccccaccatt 5173781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 47624260 - 47624208
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaa 161  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||| ||||    
T  47624260 aaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaa 47624208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 22609919 - 22609860
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||| || |||| ||||||||| ||||| ||||||||| ||||||||    
T  22609919 gggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcccaccatt 22609860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 39203668 - 39203609
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||| ||| ||||| ||||||||| ||||||||    
T  39203668 gggcaacccggtgcactaaagctcccgcatatgcaaggtccgggaaggggtcccaccatt 39203609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 4495673 - 4495719
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtcc 156  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||    
T  4495673 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtcc 4495719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 26869867 - 26869801
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||| ||| |||| ||||||||| ||||| | ||||||| ||||||||    
T  26869867 aaaaaaagggcaacccggtgcaccaaagctcccgcatacgcatggtccggcaaggggtcccaccatt 26869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 15797380 - 15797315
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||| | ||||  |||| ||||||||| ||||||||| ||||||||    
T  15797380 aaaaaagggcaacccggtgcactagagctcccacatatgcagggtccgggaaggggtcccaccatt 15797315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 30452949 - 30452892
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||    
T  30452949 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca 30452892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 40390402 - 40390357
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggt 154  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||    
T  40390402 aaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggt 40390357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 1217247 - 1217183
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| || |||||    
T  1217247 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccgccatt 1217183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 6242280 - 6242328
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtcc 156  Q
    ||||||| |||||||||||||||||| | |||||||||| |||||||||    
T  6242280 taaaaaaagggcaacccggtgcactagagctcctgcatatgcagggtcc 6242328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 14266375 - 14266423
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggg 164  Q
    ||||||||| |||||||||| |||| ||||||||||||| |||||||||    
T  14266375 gggcaacccagtgcactaaagctcccgcatacgcagggttcaggaaggg 14266423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 34771362 - 34771426
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||| |||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  34771362 aaaaagggcagcccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 34771426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 54032574 - 54032614
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtcc 156  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  54032574 gggcaacccggtgcactaaagctcccgcatacgcagggtcc 54032614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 8247689 - 8247752
Alignment:
Q  116 gggcaacccggtgcactaaaa-ctcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||||| ||||||| ||| |||| ||||||||||||||| |||||| || |||||||||||    
T  8247689 gggcaacccagtgcacttaaagctcccgcatacgcagggtccgggaaggagtcccaccattatt 8247752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 22122920 - 22122979
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||  ||||| ||||||||| ||||||||| ||||||||    
T  22122920 gggcaacccggtgcactagagctctcgcatatgcagggtccgggaaggggtcccaccatt 22122979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 31593001 - 31592942
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| |||||| || ||||||||    
T  31593001 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggagtcccaccatt 31592942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 14987109 - 14987051
Alignment:
Q  120 aacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||| |||| ||||| ||| ||||| |||| |||| |||||||||||    
T  14987109 aacccggtgcactaaagctcccgcatatgcaaggtccgggaatgggtcccaccattatt 14987051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 44403559 - 44403617
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||| || | ||||||| ||||||| ||||||||| ||||||||    
T  44403559 ggcagcccggtgcactaaagcttcagcatacgtagggtccgggaaggggtcccaccatt 44403617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 45948848 - 45948898
Alignment:
Q  123 ccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    ||||||||||||| |||| |||||||||||||||  |||||||| ||||||    
T  45948848 ccggtgcactaaagctcccgcatacgcagggtccgagaaggggtcccacca 45948898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 51644133 - 51644075
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggt 166  Q
    ||||||| ||||| | |||||||||||| |||  |||||| ||||||||||||||||||    
T  51644133 taaaaaaagggcaccgcggtgcactaaagctctcgcatacccagggtccaggaaggggt 51644075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 33926224 - 33926176
Alignment:
Q  129 cactaaaactcctgcatacgcagggtccaggaaggggttccaccattat 177  Q
    ||||||| |||  ||||| ||||||||||||||||||| ||||||||||    
T  33926224 cactaaagctctcgcatatgcagggtccaggaaggggtcccaccattat 33926176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 53996563 - 53996627
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||| |||||||||||||| ||||  ||||||||| |||  ||||||||| ||||||||    
T  53996563 aaaaagggcagcccggtgcactaaagctcccacatacgcagtgtcagggaaggggtcccaccatt 53996627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 45402258 - 45402192
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||| ||||||||    
T  45402258 aaaaaacgggcaacccggtgcactaaagctcccgcatacgcagggtctgggaaggggtcccaccatt 45402192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 4349793 - 4349734
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  4349793 gggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 4349734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 18944808 - 18944741
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaa-ctcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  18944808 aaaaaaagggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 18944741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 10668382 - 10668320
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| |||||||||||| || ||||||||| |||||||||||    
T  10668382 gggcaacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccattatt 10668320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 50606565 - 50606499
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||||||| ||||||||| ||||||||    
T  50606565 aaaaaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatt 50606499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 20036369 - 20036317
Alignment:
Q  122 cccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  20036369 cccggtgcac-aaaactcctgcatacgcagggtccgggaaggggttccaccatt 20036317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 46247950 - 46248015
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||| ||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  46247950 aaaaaagggcaacccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 46248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 46991965 - 46991900
Alignment:
Q  110 aaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||| ||||||||    
T  46991965 aaaaatgggcaacccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccatt 46991900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 1517307 - 1517371
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||   |||||||| ||||||    
T  1517307 aaaaaaagggcaacccggtgcactaaagctcctgcatacgcagggtctgagaaggggtcccacca 1517371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 27474435 - 27474376
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| ||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  27474435 gggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 27474376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 35005280 - 35005221
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||||| | || ||||||||||||||| ||||||||| ||||||||    
T  35005280 gggcaacccggtgcactaaagcgcccgcatacgcagggtccgggaaggggtcccaccatt 35005221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 31382210 - 31382276
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||| || |||| |||| ||||| ||||||||||||||||||| ||||||||    
T  31382210 aaaaaaagggcaacccggtacagtaaagctcccgcatatgcagggtccaggaaggggtcccaccatt 31382276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 38478275 - 38478344
Alignment:
Q  105 tattaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||| |||||||||||||||||| | |||| ||||| |||||||||  |||||||||||||||||    
T  38478275 tattaaaaaa-gggcaacccggtgcactagagctcccgcatatgcagggtccgagaaggggttccaccatt 38478344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 42304205 - 42304269
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||| ||||||||||||| ||||  |||||||||||||| ||||||||| ||||||||    
T  42304205 aaaaagggcaatccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccatt 42304269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 10378738 - 10378797
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||| |||| ||||| |||||||||| |||||||| ||||||||    
T  10378738 gggcagcccggtgcactaaagctcccgcatatgcagggtccaagaaggggtcccaccatt 10378797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 15511151 - 15511210
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||||||| |||   |||||||||||||||||||||||| ||||||||    
T  15511151 gggcagcccggtgcactaaagctcacacatacgcagggtccaggaaggggtaccaccatt 15511210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 34725101 - 34725160
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  34725101 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 34725160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 6925254 - 6925196
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||||||||| |||| |||||||||||| || ||||||||| ||||||||    
T  6925254 ggcaactcggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccatt 6925196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 20004093 - 20004155
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    |||||||||||||||||||| |||| ||||| || |||||  ||||||||| |||||||||||    
T  20004093 gggcaacccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattatt 20004155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 30395729 - 30395791
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccattatt 178  Q
    ||||||| |||||||||||| |||| ||||| || |||||| ||||||||| |||||||||||    
T  30395729 gggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattatt 30395791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 4587568 - 4587625
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||||||||||| || |||| ||||| ||||||||| ||||||||| ||||||||    
T  4587568 gcaacccggtgcactgaagctcccgcataggcagggtccgggaaggggtcccaccatt 4587625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 18741955 - 18742019
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||| |||||||||||||||| |||  ||||||||||||||  ||||||||| ||||||||    
T  18741955 aaaaagggaaacccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatt 18742019  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30555279 - 30555211
Alignment:
Q  107 ttaaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| || || |||||||||||||| |||  |||||||||||||||  |||||||| ||||||||    
T  30555279 ttaaaaaaaggtcagcccggtgcactaaagctctcgcatacgcagggtccgtgaaggggtcccaccatt 30555211  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 35253185 - 35253249
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||| ||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  35253185 aaaaagggcaatccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 35253249  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 6983814 - 6983873
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||| |||||||||| ||| ||||||| |||||||||||| | ||||||| ||||||||    
T  6983814 gggcagcccggtgcaccaaagctcctgcctacgcagggtccggaaaggggtcccaccatt 6983873  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 8197206 - 8197139
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||||| ||||||| ||||  ||||||||||||||  |||||||| | ||||||    
T  8197206 taaaaaaagggcaacccggtacactaaagctccaacatacgcagggtccgagaaggggtcctaccatt 8197139  T

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Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 14617189 - 14617134
Alignment:
Q  120 aacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||| |||| ||||| ||||||||| ||||||| | ||||||||    
T  14617189 aacccggtgcactaaagctcccgcatatgcagggtccgggaagggatcccaccatt 14617134  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 19414592 - 19414533
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||| | ||||||||| ||||||||    
T  19414592 gggcaacccggtgcactagagctcccgcatatgcagggtacgggaaggggtcccaccatt 19414533  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 19701734 - 19701667
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| ||| | || ||||||||||| |||| ||||||||||||||| ||||||||  ||||||||    
T  19701734 taaaaaaagggtagcctggtgcactaaagctcccgcatacgcagggtccgggaaggggccccaccatt 19701667  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 19932756 - 19932815
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| ||||||||||   || |||||||||||||||| ||||||||| ||||||||    
T  19932756 gggcaacctggtgcactaatgatcttgcatacgcagggtccgggaaggggtcccaccatt 19932815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 23796628 - 23796561
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| ||||| |||||||||||||| |||| ||||| ||||||||  |||||||||  |||||||    
T  23796628 taaaaaaagggcagcccggtgcactaaagctccagcatatgcagggtctgggaaggggtctcaccatt 23796561  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 41440597 - 41440664
Alignment:
Q  108 taaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||  ||||| ||||||| |||| |||||| ||| ||| |||||||||||||||||||    
T  41440597 taaaaaaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 41440664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 11596646 - 11596608
Alignment:
Q  137 ctcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  11596646 ctcccgcatacgcagggtccaggaaggggtcccaccatt 11596608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 24564494 - 24564448
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtcca 157  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||    
T  24564494 aaaaagggcaacccggtgcactaacgctcctgcataggcagggtcca 24564448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 35117774 - 35117828
Alignment:
Q  122 cccggtgcactaaaactcctgca-tacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||| ||| ||||    
T  35117774 cccggtgcactaaagctcctgcattacgcagggtccgggaaggggtcccatcatt 35117828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 9939615 - 9939570
Alignment:
Q  120 aacccggtgcactaaaactcctgcatacgcagggtccaggaagggg 165  Q
    |||||||||||||||| |||| |||||||||||||||  |||||||    
T  9939615 aacccggtgcactaaagctcccgcatacgcagggtccgagaagggg 9939570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 43768301 - 43768237
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccacca 173  Q
    |||||| ||||| ||||||||| |||| |||| | ||||||||||||  ||||||||| ||||||    
T  43768301 aaaaaaagggcagcccggtgcattaaagctcccgtatacgcagggtctgggaaggggtcccacca 43768237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 10940 - 10883
Alignment:
Q  118 gcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| |||||||||| |||| ||||||||||||||| ||||||||| ||||||||    
T  10940 gcaacccagtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 10883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 13022 - 13086
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||||| | || ||||||||||||||  ||||||||| ||||||||    
T  13022 aaaaagggcaacccggtgcactaaagcccccgcatacgcagggtctgggaaggggtcccaccatt 13086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 30714 - 30650
Alignment:
Q  111 aaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||| |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  30714 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 30650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 48637 - 48696
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  48637 gggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 48696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 24129 - 24195
Alignment:
Q  109 aaaaaacgggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||| |||||| ||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||    
T  24129 aaaaaaagggcaatccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatt 24195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 10053 - 10108
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccac 171  Q
    |||||||||||||||||  | |||||||||| ||||||||| ||||||||| ||||    
T  10053 gggcaacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcccac 10108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 20381 - 20436
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccac 171  Q
    |||||||||||||||||  | |||||||||| ||||||||| ||||||||| ||||    
T  20381 gggcaacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcccac 20436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 72870 - 72929
Alignment:
Q  116 gggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    |||||||| ||||||||||| |||| ||||||||||| ||| ||||||||| | ||||||    
T  72870 gggcaacctggtgcactaaagctcccgcatacgcaggttccgggaaggggtactaccatt 72929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 1591 - 1649
Alignment:
Q  117 ggcaacccggtgcactaaaactcctgcatacgcagggtccaggaaggggttccaccatt 175  Q
    ||||||| ||||||||||| |||| |||||||| |||||| ||||||||| ||| ||||    
T  1591 ggcaacctggtgcactaaagctcccgcatacgccgggtccgggaaggggtcccatcatt 1649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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