View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_high_30 (Length: 269)

Name: NF21397_high_30
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_high_30
NF21397_high_30
[»] chr6 (11 HSPs)
chr6 (1-260)||(30955204-30955463)
chr6 (1-260)||(30944944-30945203)
chr6 (20-260)||(31145397-31145637)
chr6 (20-260)||(31171710-31171950)
chr6 (20-238)||(31189455-31189673)
chr6 (21-238)||(31224476-31224693)
chr6 (6-238)||(30992453-30992685)
chr6 (6-260)||(30960949-30961203)
chr6 (20-260)||(31201262-31201502)
chr6 (20-260)||(31214185-31214425)
chr6 (20-235)||(31229759-31229974)
[»] chr7 (9 HSPs)
chr7 (162-240)||(31618457-31618535)
chr7 (165-238)||(31438982-31439055)
chr7 (162-238)||(31541209-31541285)
chr7 (156-228)||(31585591-31585663)
chr7 (159-234)||(31608444-31608519)
chr7 (162-240)||(31572804-31572881)
chr7 (27-115)||(31576052-31576140)
chr7 (27-67)||(31585462-31585502)
chr7 (27-115)||(31604718-31604806)
[»] chr1 (9 HSPs)
chr1 (153-234)||(9233930-9234011)
chr1 (6-73)||(49215559-49215626)
chr1 (156-238)||(49725148-49725230)
chr1 (156-238)||(49728570-49728652)
chr1 (153-234)||(9384383-9384464)
chr1 (6-43)||(49714567-49714604)
chr1 (3-51)||(9495608-9495656)
chr1 (162-234)||(11011057-11011129)
chr1 (6-74)||(49683286-49683354)
[»] chr4 (1 HSPs)
chr4 (159-238)||(15063329-15063408)
[»] chr8 (1 HSPs)
chr8 (159-240)||(44035640-44035721)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30955463 - 30955204
Alignment:
Q  1 ctccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955463 ctccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 30955364  T
Q  101 gactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955363 gactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatct 30955264  T
Q  201 aaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955263 aaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 30955204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30945203 - 30944944
Alignment:
Q  1 ctccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945203 ctcccaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 30945104  T
Q  101 gactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatct 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945103 gactgttcctcttgcatttgacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatct 30945004  T
Q  201 aaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||    
T  30945003 aaaagaatgttatgcggttttatgtcaaaatgtaaaatccggatattacaccccctatgc 30944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 31145397 - 31145637
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31145397 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31145496  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31145497 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31145596  T
Q  220 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31145597 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 31171710 - 31171950
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31171710 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31171809  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31171810 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31171909  T
Q  220 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31171910 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31171950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 31189455 - 31189673
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31189455 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31189554  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    | |||  | ||| |||||||||| |   ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  31189555 gtcatcgaaataatgctctctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 31189654  T
Q  220 ttatatcaaaatgtaaaat 238  Q
    |||| || |||||||||||    
T  31189655 ttatgtcgaaatgtaaaat 31189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 31224693 - 31224476
Alignment:
Q  21 atcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||  || ||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgttcctctttgatctg 31224594  T
Q  121 acatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttt 220  Q
    ||||  | | | |||| ||||||  |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  31224593 acattgaaacaatgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttt 31224494  T
Q  221 tatatcaaaatgtaaaat 238  Q
    ||| ||||||||||||||    
T  31224493 tatgtcaaaatgtaaaat 31224476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 30992685 - 30992453
Alignment:
Q  6 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactg 105  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||    
T  30992685 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattg 30992586  T
Q  106 ttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaag 205  Q
    | ||||||  ||  |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  30992585 tccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaag 30992486  T
Q  206 aatgttatgtggttttatatcaaaatgtaaaat 238  Q
    |||||||||||||||||| ||||||||||||||    
T  30992485 aatgttatgtggttttatgtcaaaatgtaaaat 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 30961203 - 30960949
Alignment:
Q  6 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactg 105  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || | ||    
T  30961203 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttcaggagctacataccccattg 30961104  T
Q  106 ttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaag 205  Q
    | ||||||  ||  |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  30961103 tccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaag 30961004  T
Q  206 aatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    |||||||||||||||||| |||||||||||||| || |||  |||||| ||||||    
T  30961003 aatgttatgtggttttatgtcaaaatgtaaaattcgagtagcacatcctctatgc 30960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 31201262 - 31201502
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |  || ||||||  || |    
T  31201262 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctctttgatct 31201361  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    |||||  | ||| ||||||| |||    |||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  31201362 gacatcgaaataatgctctcgttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggtt 31201461  T
Q  220 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    |||| || ||||||||||| || ||  ||||||| ||||||    
T  31201462 ttatgtcgaaatgtaaaattcgagtggtacatcctctatgc 31201502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 31214425 - 31214185
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||||| | ||||||||| |  || |||||||||||||| |  |||||||| |||  |    
T  31214425 catcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctctagcacct 31214326  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    |||||  | ||| |||| ||||||| |||||| ||  ||||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||    
T  31214325 gacatcgaaataatgctttctttcttgagacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggtt 31214226  T
Q  220 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 260  Q
    ||||||||||||||||||| || ||| | ||||| ||||||    
T  31214225 ttatatcaaaatgtaaaattcgagtactgcatcctctatgc 31214185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 31229974 - 31229759
Alignment:
Q  20 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 119  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||| | | |||||||||  || ||||||||||| || | ||| ||||| || | |    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctctagcgtct 31229875  T
Q  120 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 219  Q
    |||||  | ||| ||||||||||||   | || ||  ||| ||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||    
T  31229874 gacatagaaataatgctctctttcttatggcaaagtcttgaaagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtt 31229775  T
Q  220 ttatatcaaaatgtaa 235  Q
    | || |||||||||||    
T  31229774 tgatgtcaaaatgtaa 31229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 31618457 - 31618535
Alignment:
Q  162 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 240  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||| |||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 31618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 31439055 - 31438982
Alignment:
Q  165 ccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 238  Q
    |||||||| || || |||||||| |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  31439055 ccaaaatcagatatttttggacaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 31438982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 31541209 - 31541285
Alignment:
Q  162 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 238  Q
    ||||||||||| || || || || || ||||||||||| ||||||||||| |||||||| ||||||| ||| |||||    
T  31541209 agtccaaaatcagagattttggggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaat 31541285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 31585591 - 31585663
Alignment:
Q  156 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa 228  Q
    ||||| ||||||||||| || || |||||||| |||| |||||| ||||||||||| || ||||| |||||||    
T  31585591 tttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaa 31585663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 31608444 - 31608519
Alignment:
Q  159 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 234  Q
    |||||||||||||| || || |||||||| || | |||||| ||||||||||| || ||||| ||||||| |||||    
T  31608444 gcaagtccaaaatcagatatttttggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgta 31608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 31572881 - 31572804
Alignment:
Q  162 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 240  Q
    ||||||||||| || || ||||| || |||| |||||| ||||||||||| || ||||||||||||| ||| |||||||    
T  31572881 agtccaaaatcagagatttttgggcaaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatcc 31572804  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 31576052 - 31576140
Alignment:
Q  27 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 115  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31576052 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31576140  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 31585462 - 31585502
Alignment:
Q  27 ccataactataaacatcagacttgtgtgaaactcctccaaa 67  Q
    ||||||||||| |||||||||||||| |||||||| |||||    
T  31585462 ccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 31604718 - 31604806
Alignment:
Q  27 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 115  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31604718 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31604806  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 9234011 - 9233930
Alignment:
Q  153 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 234  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || |||||||||||||    
T  9234011 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9233930  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 49215626 - 49215559
Alignment:
Q  6 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtct 73  Q
    ||||| ||||||| |||||||||||||||||||||||| || || ||||| || || ||||| |||||    
T  49215626 accatttctaaaaccatcattccataactataaacatctgatttatgtgacaccccaccaaaatgtct 49215559  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 49725230 - 49725148
Alignment:
Q  156 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 238  Q
    ||||||||||||||||| |||||  | ||    ||||| ||||| |||||||||||||| |||||||| |||||||| |||||    
T  49725230 tttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaat 49725148  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 49728652 - 49728570
Alignment:
Q  156 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 238  Q
    ||||||||||||||||| |||| ||| ||||| ||||  || ||||  |  || ||||| |||||||||||||||||||||||    
T  49728652 tttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat 49728570  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 9384383 - 9384464
Alignment:
Q  153 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 234  Q
    |||||||||||||||||||| |||| |||||||   || | ||| |||| |||||| ||||| || || |||||||||||||    
T  9384383 agctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9384464  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 49714604 - 49714567
Alignment:
Q  6 accatctctaaaagcatcattccataactataaacatc 43  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49714604 accatttctaaaaccatcattccataactataaacatc 49714567  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 9495656 - 9495608
Alignment:
Q  3 ccgaccatctctaaaagcatcattccataactataaacatcagacttgt 51  Q
    |||||||||||||  | || ||||||| |||||||||||||||||||||    
T  9495656 ccgaccatctctagcaacaacattccaaaactataaacatcagacttgt 9495608  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 11011057 - 11011129
Alignment:
Q  162 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 234  Q
    ||||||||||| ||||  ||||||   ||||||||||| | |||||||||||| || ||||||||||| ||||    
T  11011057 agtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 49683354 - 49683286
Alignment:
Q  6 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtcta 74  Q
    ||||| ||||||| ||||||||||||||| || ||||| || |||||||| || || ||||| ||||||    
T  49683354 accatttctaaaaccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtcta 49683286  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 15063408 - 15063329
Alignment:
Q  159 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 238  Q
    ||||| |||||||| || || ||||| || |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  15063408 gcaagaccaaaatcagatatttttgggcaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 15063329  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 44035721 - 44035640
Alignment:
Q  159 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 240  Q
    |||||||||||||| || ||||| ||||   || |||| || |||||||||||||||||||| || || ||||| |||||||    
T  44035721 gcaagtccaaaatcagatatcttgggacggtaagtttcgtccaaaagaatgttatgtggtttaatgtcgaaatgaaaaatcc 44035640  T

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