View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_high_32 (Length: 256)
Name: NF21397_high_32
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 4715855 - 4716081
Alignment:
| Q |
13 |
aatatacggaaggttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtata |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4715855 |
aatatacggaaggttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtata |
4715954 |
T |
|
| Q |
113 |
aacctcatgaaacatggaattttagtgaagaaaattttgccttatgaagaagatgaaacacatagataacctcaccttttttcatacagaaaatcttaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4715955 |
aacctcatgaaacatggaattttagtgaagaaaattttgccttatgaagaagatgaaacacatagataacctcaccttttttcatacagaaaatcttaca |
4716054 |
T |
|
| Q |
213 |
ggtttctggaaatacaaaattaaagct |
239 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4716055 |
ggtttctggaaatacaaaattaaagct |
4716081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 41612101 - 41612271
Alignment:
| Q |
25 |
gttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtataaacctcatgaaa |
124 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||| ||||||||||| |
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| T |
41612101 |
gttttagatgacttttctgatctaaagtataggatagaaaaacaaacgtcctatatagaaactttgcagtttgaagaagaaaagtatatacctcatgaaa |
41612200 |
T |
|
| Q |
125 |
catggaattttagtgaagaaaattttgcc--ttatgaagaagatgaaacacatagataacctcaccttttt |
193 |
Q |
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| T |
41612201 |
catggaattttcatgaagaaaattttgcctgttatgaagaagatgaaacacatagatatccacacattttt |
41612271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 2615904 - 2616073
Alignment:
| Q |
26 |
ttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtataaacctcatgaaac |
125 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||| |||||||||||| |
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| T |
2615904 |
ttttagatgacttttctgatctaaagtataggatagaaaaacaaacgtcctatatagaaactttgcagtttgaagaagaaaattatatacctcatgaaac |
2616003 |
T |
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| Q |
126 |
atggaattttagtgaagaaaattttgcc--ttatgaagaagatgaaacacatagataacctcaccttttt |
193 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |
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| T |
2616004 |
atggaattttcatgaagaaaattttgcctgttatgaagaagatgaaacacatagatatccacacattttt |
2616073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 56465080 - 56465250
Alignment:
| Q |
25 |
gttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtataaacctcatgaaa |
124 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||| |||||||||| |
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| T |
56465080 |
gttttagatgacttttctgatctaaagtataggatagaaaaacaaacgtcctatatagaaactttgcagtttgaagaagaaaagtatatgcctcatgaaa |
56465179 |
T |
|
| Q |
125 |
catggaattttagtgaagaaaattttgcc--ttatgaagaagatgaaacacatagataacctcaccttttt |
193 |
Q |
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||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| || ||| ||||| |
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| T |
56465180 |
catggaattttcatgaagaaaatttcgcctgttatgaagaagatgaaacacatagatatccgcacattttt |
56465250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 51390842 - 51390680
Alignment:
| Q |
16 |
atacggaaggttttcgatgacttttctgatctaaaatataggatagaaaaacaaacatcctatatagaaactttgcagtctaaagaagaaaggtataaac |
115 |
Q |
| |
|
|||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||| ||||| || |
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| T |
51390842 |
atacagaaagttttagatgacttttttgatctaaaatataggatagaaaaacaaacgtcctatatagaaacttttcagtttgaagaagaaaagtatagac |
51390743 |
T |
|
| Q |
116 |
ctcatgaaacatggaattttagtgaagaaaattttgcc--ttatgaagaagatgaaacacata |
176 |
Q |
| |
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||||||||||||||| |||| | |||||||||||||| |||| |||||||||||||||||| |
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| T |
51390742 |
ctcatgaaacatggagttttcattaagaaaattttgcctgttataaagaagatgaaacacata |
51390680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 23453603 - 23453649
Alignment:
| Q |
158 |
gaagaagatgaaacacatagataacctcaccttttttcatacagaaaa |
205 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
23453603 |
gaagaagatgaaacacatagatatcctcacc-tttttcatacagaaaa |
23453649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 22427639 - 22427605
Alignment:
| Q |
205 |
atcttacaggtttctggaaatacaaaattaaagct |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
22427639 |
atcttacaggtttctggaaatacaaaattaaagct |
22427605 |
T |
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