View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21397_high_6 (Length: 518)
Name: NF21397_high_6
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 39281598 - 39281896
Alignment:
| Q |
10 |
catcatcaataatcttcacatagcggtaagtggaaatttcactgtagatacatcacttttgaaggatttcattcttgccatacataactgcacgttgcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
39281598 |
catcatcaataatcttcacatagcggtaagtggaaattttgctgtagatacatcacttttgaaggatttcgtttttgccatacataactgcacgttgcaa |
39281697 |
T |
|
| Q |
110 |
gagctgtggcgtcgaattcttgtgttaannnnnnnnnn-aaaaccttaccaaatttttgtgtcagatgaaatctcaataaattaatcatgtgctccttct |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39281698 |
gagctgtggcgtcgaactcttgtgttaatttttttttttaaaaccttaccaaatttttgtgtcagatgaaatctcaataaattaatcatctgctccttct |
39281797 |
T |
|
| Q |
209 |
ca---aatgtcagagtttgtcagactgcaagtacgttgatggtagaagcaaatgtattgtttcagcagattttgtgctgctgagaatcaattgagttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39281798 |
cagtaaatgtcagagtttgtcagactgcaagtacgttgatggcagaagcaaatgtattgtttcagcagattttgtgctgctgagaatcaattgagttca |
39281896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 371 - 502
Target Start/End: Original strand, 39281963 - 39282098
Alignment:
| Q |
371 |
ccattgtggggtatggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaa |
466 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39281963 |
ccattgtgggataaggtgtttggtaaaatgcctacgagaaaaatctggtgtttagcatcacatgttttttggtaagaattagaagacaaatgttttacaa |
39282062 |
T |
|
| Q |
467 |
catgtgttgctcatattgtgatagatacaataatat |
502 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39282063 |
catgtgttgctcatattatgatagatacaataatat |
39282098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 482
Target Start/End: Original strand, 16700879 - 16700978
Alignment:
| Q |
385 |
ggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaacatgtgttgctcat |
480 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||| ||| |||| |||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
16700879 |
ggtgtttggtaaaatgcctatgaataaaatttggtgtttagcatcacatg-tttttggtaagagttaaaagac-aatgtttttcaacatgtgttgctcat |
16700976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University