View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_high_8 (Length: 481)

Name: NF21397_high_8
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_high_8
NF21397_high_8
[»] chr3 (18 HSPs)
chr3 (15-466)||(1638287-1638741)
chr3 (16-285)||(50342487-50342752)
chr3 (57-287)||(17370922-17371152)
chr3 (59-276)||(17267162-17267384)
chr3 (90-288)||(29788103-29788297)
chr3 (67-195)||(55390732-55390860)
chr3 (341-457)||(17266977-17267096)
chr3 (59-457)||(20409458-20409855)
chr3 (341-455)||(17371207-17371324)
chr3 (90-239)||(29634822-29634967)
chr3 (350-457)||(55390620-55390729)
chr3 (351-457)||(29634610-29634719)
chr3 (220-315)||(45297224-45297319)
chr3 (369-462)||(50342307-50342403)
chr3 (157-254)||(3162487-3162583)
chr3 (406-447)||(50342193-50342234)
chr3 (402-439)||(50342072-50342109)
chr3 (402-442)||(29787946-29787986)
[»] chr6 (32 HSPs)
chr6 (23-457)||(8710966-8711402)
chr6 (26-430)||(5972747-5973153)
chr6 (15-454)||(14095712-14096145)
chr6 (15-238)||(3097424-3097647)
chr6 (15-238)||(21864806-21865029)
chr6 (90-283)||(18743843-18744035)
chr6 (68-456)||(24559940-24560332)
chr6 (90-245)||(2402351-2402501)
chr6 (170-285)||(30764947-30765062)
chr6 (166-284)||(17465106-17465224)
chr6 (70-287)||(19242924-19243138)
chr6 (170-285)||(33200341-33200455)
chr6 (66-230)||(20244291-20244452)
chr6 (66-230)||(22138275-22138436)
chr6 (343-457)||(20244582-20244700)
chr6 (343-457)||(22138566-22138684)
chr6 (402-462)||(33200832-33200892)
chr6 (341-455)||(19243193-19243310)
chr6 (341-466)||(21864577-21864705)
chr6 (176-312)||(22962277-22962412)
chr6 (176-312)||(23825981-23826116)
chr6 (72-154)||(5571298-5571380)
chr6 (403-457)||(22962128-22962182)
chr6 (403-457)||(23826211-23826265)
chr6 (90-232)||(23607869-23608007)
chr6 (402-457)||(21864457-21864512)
chr6 (350-392)||(2402605-2402647)
chr6 (341-454)||(33200512-33200628)
chr6 (402-442)||(30764663-30764703)
chr6 (228-313)||(3386269-3386354)
chr6 (350-430)||(18743693-18743776)
chr6 (406-447)||(30764787-30764828)
[»] chr5 (36 HSPs)
chr5 (23-452)||(28718145-28718578)
chr5 (24-457)||(10975890-10976327)
chr5 (59-457)||(16417790-16418192)
chr5 (90-288)||(19748213-19748411)
chr5 (94-239)||(23228582-23228727)
chr5 (102-282)||(31488141-31488321)
chr5 (16-175)||(21293900-21294057)
chr5 (146-281)||(22858166-22858300)
chr5 (102-238)||(15797992-15798129)
chr5 (350-457)||(31488389-31488499)
chr5 (75-202)||(37396844-37396967)
chr5 (389-457)||(7575789-7575857)
chr5 (371-462)||(15797847-15797941)
chr5 (161-288)||(25360339-25360466)
chr5 (341-457)||(34595611-34595731)
chr5 (369-462)||(23228372-23228468)
chr5 (161-230)||(13130898-13130967)
chr5 (402-457)||(11477590-11477645)
chr5 (160-307)||(26604451-26604597)
chr5 (96-288)||(7575962-7576150)
chr5 (406-454)||(36311596-36311644)
chr5 (341-457)||(26604293-26604416)
chr5 (189-288)||(16417577-16417676)
chr5 (157-287)||(11477764-11477892)
chr5 (167-205)||(31238204-31238242)
chr5 (369-453)||(22857996-22858083)
chr5 (220-313)||(26604113-26604206)
chr5 (166-213)||(12067557-12067605)
chr5 (223-361)||(28718621-28718760)
chr5 (161-213)||(36311776-36311828)
chr5 (220-299)||(15418353-15418432)
chr5 (406-452)||(22857868-22857914)
chr5 (405-454)||(37397173-37397222)
chr5 (198-238)||(18921294-18921334)
chr5 (188-288)||(19748597-19748697)
chr5 (406-454)||(31238421-31238469)
[»] chr8 (12 HSPs)
chr8 (27-457)||(27783534-27783964)
chr8 (24-285)||(10204657-10204917)
chr8 (15-287)||(24629788-24630060)
chr8 (94-457)||(26140305-26140671)
chr8 (157-457)||(32108581-32108884)
chr8 (88-456)||(12784868-12785237)
chr8 (158-239)||(12504663-12504744)
chr8 (15-164)||(8751836-8751989)
chr8 (403-447)||(22843012-22843056)
chr8 (94-233)||(22843234-22843367)
chr8 (350-457)||(24629615-24629725)
chr8 (198-238)||(3589099-3589139)
[»] chr1 (13 HSPs)
chr1 (23-457)||(21760075-21760514)
chr1 (15-285)||(11789010-11789284)
chr1 (90-288)||(19262274-19262472)
chr1 (59-288)||(26793432-26793657)
chr1 (169-457)||(39899590-39899878)
chr1 (350-457)||(48706595-48706705)
chr1 (90-282)||(48706770-48706968)
chr1 (341-457)||(27800062-27800181)
chr1 (90-217)||(15471674-15471807)
chr1 (341-457)||(11788835-11788954)
chr1 (402-462)||(27574917-27574977)
chr1 (178-264)||(27799899-27799984)
chr1 (404-457)||(19262100-19262153)
[»] chr7 (39 HSPs)
chr7 (90-457)||(27317508-27317884)
chr7 (15-287)||(12309466-12309738)
chr7 (15-230)||(7066731-7066946)
chr7 (90-285)||(31267226-31267420)
chr7 (21-287)||(16886364-16886630)
chr7 (87-288)||(12083077-12083278)
chr7 (90-233)||(7414116-7414259)
chr7 (90-287)||(28066404-28066601)
chr7 (122-259)||(3924925-3925062)
chr7 (335-462)||(7413896-7414026)
chr7 (68-163)||(26926628-26926723)
chr7 (341-455)||(31267476-31267593)
chr7 (349-457)||(3925131-3925242)
chr7 (157-306)||(16651188-16651335)
chr7 (157-306)||(17625548-17625695)
chr7 (341-457)||(10546065-10546184)
chr7 (181-238)||(5282460-5282517)
chr7 (341-457)||(26926750-26926869)
chr7 (389-457)||(1321335-1321403)
chr7 (341-452)||(5282032-5282146)
chr7 (180-247)||(5282189-5282256)
chr7 (350-428)||(12309377-12309458)
chr7 (216-313)||(13304102-13304199)
chr7 (158-283)||(23553598-23553723)
chr7 (341-457)||(29656179-29656298)
chr7 (157-289)||(1321502-1321633)
chr7 (389-457)||(23553833-23553901)
chr7 (94-153)||(5282265-5282324)
chr7 (406-447)||(7413782-7413823)
chr7 (402-457)||(7067122-7067177)
chr7 (341-454)||(16886192-16886309)
chr7 (402-461)||(41935029-41935088)
chr7 (161-207)||(3380507-3380553)
chr7 (406-452)||(12083400-12083446)
chr7 (350-394)||(41935111-41935155)
chr7 (161-207)||(11824976-11825022)
chr7 (371-452)||(28067494-28067578)
chr7 (115-201)||(41935305-41935391)
chr7 (406-454)||(28066723-28066771)
[»] chr4 (21 HSPs)
chr4 (15-392)||(31931646-31932021)
chr4 (15-285)||(24075173-24075431)
chr4 (90-285)||(20759000-20759195)
chr4 (90-285)||(20765391-20765586)
chr4 (23-285)||(25144625-25144871)
chr4 (66-245)||(44100614-44100791)
chr4 (350-454)||(25144936-25145043)
chr4 (341-457)||(12227174-12227293)
chr4 (166-230)||(17292284-17292348)
chr4 (341-457)||(44100888-44101007)
chr4 (402-462)||(24075680-24075740)
chr4 (159-254)||(3510304-3510398)
chr4 (406-452)||(20758735-20758781)
chr4 (406-452)||(20765126-20765172)
chr4 (404-457)||(20758859-20758912)
chr4 (404-457)||(20765250-20765303)
chr4 (341-452)||(24075487-24075601)
chr4 (188-239)||(23124252-23124303)
chr4 (109-225)||(12227408-12227520)
chr4 (389-447)||(35049361-35049419)
chr4 (90-134)||(13866410-13866454)
[»] chr2 (21 HSPs)
chr2 (66-447)||(18332683-18333063)
chr2 (15-259)||(28746849-28747094)
chr2 (33-285)||(28276764-28277005)
chr2 (90-283)||(18878655-18878848)
chr2 (93-288)||(11718909-11719104)
chr2 (58-282)||(20988632-20988856)
chr2 (64-239)||(5306380-5306551)
chr2 (341-457)||(23282698-23282814)
chr2 (353-457)||(11719170-11719277)
chr2 (369-457)||(12763966-12764057)
chr2 (96-178)||(11679055-11679137)
chr2 (409-461)||(5305342-5305394)
chr2 (402-457)||(18879099-18879154)
chr2 (210-313)||(20529256-20529359)
chr2 (341-462)||(18878906-18879030)
chr2 (222-361)||(18333112-18333252)
chr2 (161-207)||(31991767-31991813)
chr2 (166-282)||(26617335-26617451)
chr2 (350-457)||(28276589-28276699)
chr2 (406-454)||(27650092-27650140)
chr2 (90-134)||(27650438-27650482)
[»] scaffold0121 (2 HSPs)
scaffold0121 (94-288)||(5502-5696)
scaffold0121 (350-457)||(5759-5869)
[»] scaffold0015 (1 HSPs)
scaffold0015 (341-457)||(22344-22463)
[»] scaffold0500 (1 HSPs)
scaffold0500 (270-361)||(3210-3302)
[»] scaffold0086 (1 HSPs)
scaffold0086 (220-312)||(45911-46003)
[»] scaffold0591 (1 HSPs)
scaffold0591 (157-224)||(2829-2895)
[»] scaffold0294 (1 HSPs)
scaffold0294 (157-313)||(1239-1388)
[»] scaffold0027 (1 HSPs)
scaffold0027 (166-245)||(36894-36974)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 1638741 - 1638287
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1638741 gatgaatgcgtgaggaacatgttctccagatattatcaggaacgcatgttcccgaggattgagatggaagatacattgctcagatcacctggagatattc 1638642  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1638641 ttaagagtttgtttctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 1638542  T
Q  215 tgaagatgttggtattga---aatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatccta 311  Q
    ||||||||||||||||||   | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1638541 tgaagatgttggtattgatcaagtgtcttatactgaatgtaaagatttacaaacctctttgaaaaatcaaaagaatggataaaacatattttgtatccta 1638442  T
Q  312 cctattggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcc 411  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1638441 cctaatggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcc 1638342  T
Q  412 tctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaac 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1638341 tctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaac 1638287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 50342752 - 50342487
Alignment:
Q  16 atgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattct 115  Q
    |||| |||||||||| ||||||||| ||| |||||| |||| ||||| |||||   |||||| |||||| ||| ||||| ||||| |||| ||||||| |    
T  50342752 atgattgcgtgaggaccatgttctccagacattatcgggaatgcatgttcccggtaattgagttggaagctacgttgctaagatcgcctgaagatattat 50342653  T
Q  116 caagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgct 215  Q
     ||  |||||||| ||||||||||||||||||||||| ||| ||    | ||| ||||||||||||||||||| |||| |||||||||||||| ||||||    
T  50342652 gaacggtttgattatgccataaaattatgtttaggtatcatcat----atgtattgtctttattttgttggaaattaattttaattcttgttagtttgct 50342557  T
Q  216 gaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    |||| ||||||||||||| ||||| ||||||||||||  ||||||||| |||||||||||| ||||||||    
T  50342556 gaagttgttggtattgaagtgtcttatactgaatgtagtgatttacaaacctctttgaaaagtcaaaaga 50342487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 57 - 287
Target Start/End: Original strand, 17370922 - 17371152
Alignment:
Q  57 cgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcat 156  Q
    |||||| |||||| |||||||||||  |  || ||| |||| || |||| |||||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  17370922 cgcatgttcccgatgattgagatggttgcaacgttgttgaggtcgcctgaagatattctcaagagtttgattcttccacaagattatgtataggtagcat 17371021  T
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
     ||||||| ||||||||||||||||||||||||||||||||||||  ||  | |||| |||  | ||||||||| || ||||| ||||| |  ||||||     
T  17371022 aattattatgtagtgtctttattttgttggaatttaagtttaattaatggaagtttgatgagaaagttggtattaaagtgtcttatacttagggtaaagg 17371121  T
Q  257 tttacaagcctctttgaaaaatcaaaagaat 287  Q
    ||| || | || |||||||| ||||||||||    
T  17371122 tttgcacggctatttgaaaactcaaaagaat 17371152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 17267384 - 17267162
Alignment:
Q  59 catggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaa------attatgtttaggta 152  Q
    |||| ||||| |||| || ||| ||| ||| ||||||||||  |||  |||||||||||||||||||||||||||| ||       |||||||||||||     
T  17267384 catgttcccgtggatcgatatgtaagttacgttgctgagattgcctaaagatattctcaagagtttgattctgccagaaccagaagattatgtttaggtt 17267285  T
Q  153 gcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgta 252  Q
       | ||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||| ||||| ||||| | ||||    
T  17267284 tt-tcattattatgtaatgtctttattttgttgtaatttaagtttaattcttgttagtttgctgaatatgttggtaatgaagtgtcttatacttagtgta 17267186  T
Q  253 aagatttacaagcctctttgaaaa 276  Q
     |||||| ||||  ||||||||||    
T  17267185 cagatttgcaagattctttgaaaa 17267162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 29788297 - 29788103
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||||| || ||| ||||||||||||||||||| | || |  |  |||||||||||| ||||||||   ||||||||||||||||||| || |    
T  29788297 ttgctgagatcacttgaagaaattctcaagagtttgattcggtcagatgaagatgtttaggtagtattattat---gtagtgtctttattttgtttgatt 29788201  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    ||| ||||||||| || || ||||||||||||||||  |||||| ||||| ||||| |  ||||| |||| |||| ||||||||||| |||||||||||    
T  29788200 tta-gtttaattcatggtagtttgctgaagatgttgacattgaagtgtcttatacttagcgtaaaaatttgcaagtctctttgaaaactcaaaagaatg 29788103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 55390860 - 55390732
Alignment:
Q  67 cgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacg 166  Q
    |||||||||||||||| | ||||||| ||| |||||||| |||||||||||| ||||||||| ||||| || ||||||||||| |||||| | ||||| |    
T  55390860 cgaggattgagatggatgctacattgttgatatcacctgaagatattctcaaaagtttgattatgccacaagattatgtttagatagcatcaatattatg 55390761  T
Q  167 tagtgtctttattttgttggaatttaagt 195  Q
    ||||||||||||||| || ||||||||||    
T  55390760 tagtgtctttattttattagaatttaagt 55390732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 17267096 - 17266977
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||  |||| |||||||| ||| |||||||| |||||||||||||   ||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  17267096 attcctttgtataggatgagtgtgacgtaagggaaagcacctctaagatattgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttgg 17266997  T
Q  438 cagggcagtatgattaagtt 457  Q
     || |||||| |||||||||    
T  17266996 aagtgcagtaagattaagtt 17266977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 457
Target Start/End: Complemental strand, 20409855 - 20409458
Alignment:
Q  59 catggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcatta 158  Q
    |||| |||||||||||||||| || | ||||||| ||||||| |||  ||||||| |||||||||||||| ||||| |  |||| ||||||||||   ||    
T  20409855 catgttcccgaggattgagatcgatgctacattgttgagatcgccttaagatattttcaagagtttgattatgccagatgattaagtttaggtag---ta 20409759  T
Q  159 ttattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatt 258  Q
    |||||| || ||| | |||||||||||| |||| ||||||| ||||||||  ||  |||||||||||| |||||| ||| | ||| | |  |||||| ||    
T  20409758 ttattatgttgtgccattattttgttgg-attttagtttaactcttgttagctttttgaagatgttggcattgaagtgtgtgatagttagcgtaaaggtt 20409660  T
Q  259 tacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc-tattggttgtacaaattttttcatcagattccttcatataagat 357  Q
    | |||| |||||| |||| ||| ||||||| | | |||| |   ||||| || ||  ||    | || || ||||  ||||  |||||||| |||| |||    
T  20409659 tgcaagtctctttcaaaactcacaagaatgaagagaacacaacatgtattctgccgaatcaactatataagttttcacatcgaattccttcgtataggat 20409560  T
Q  358 gagtgggacataagggaatgcacctctaagatgt--tttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaag 455  Q
    |||||  | | |||||||||||  ||||||||||  |||||  || ||||||| ||| |||||||| |||||||||||||| ||| |||||| |||||||    
T  20409559 gagtgtaagaaaagggaatgcatttctaagatgttgtttgtgtttgatcatgcccctttgtcaattaaaacttgttagttgacagagcagtaggattaag 20409460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 17371207 - 17371324
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    ||||||||||||| |||||||| |||  | | |||||||  |||||||||||   |||| ||| ||||||||||| ||||||||||||||||||||||||    
T  17371207 attccttcatataggatgagtgtgacgaacgagaatgcaattctaagatgttgttttgtgcttgatcatgctcctttgtcaattgaaacttgttagttgg 17371306  T
Q  438 cagggcagtatgattaag 455  Q
    ||| |||||| |||||||    
T  17371307 cagtgcagtaggattaag 17371324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 239
Target Start/End: Complemental strand, 29634967 - 29634822
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||| |||| |||||||||||||||||||| || | || |  |   ||| ||||||| ||||||||   || ||||| ||||||||||| |||    
T  29634967 ttgctgagatcgcctgaagatattctcaagagtttgaatcggtcagatgaaggtgtgtaggtagtattattat---gttgtgtccttattttgttg-aat 29634872  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtct 239  Q
    || |||||||||||||||| ||||||||||||||||  |||||| |||||    
T  29634871 tttagtttaattcttgttagtttgctgaagatgttgacattgaagtgtct 29634822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 55390729 - 55390620
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgt---tttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    |||||||||||||  ||| ||| |||||||| |||| |||||   || |||||| ||||||||| ||||||||||||||||||| |||||||| ||||||    
T  55390729 tataagatgagtgtcacaaaagagaatgcacttcta-gatgtagtttcgtacttgatcatgctcatctgtcaattgaaacttgtcagttggcaaggcagt 55390631  T
Q  447 atgattaagtt 457  Q
    | |||||||||    
T  55390630 aggattaagtt 55390620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 29634719 - 29634610
Alignment:
Q  351 ataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    ||||||||||||||||| |||||| ||||| |||||||   ||||||||  || |||||| |||| ||||||||||||||||| |||||| | | |||||    
T  29634719 ataagatgagtgggacaaaagggattgcacttctaagatgttgttttgtgtttgatcatgttcctttgtcaattgaaacttgtcagttggtatgacagta 29634620  T
Q  448 tgattaagtt 457  Q
     |||||||||    
T  29634619 ggattaagtt 29634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 45297319 - 45297224
Alignment:
Q  220 atgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctaccta 315  Q
    |||||||  ||||| ||||| ||||| | ||||| ||||| | || ||||| ||||| ||||||||||||| | |||||||||||||| |||||||    
T  45297319 atgttggctttgaagtgtctaatactcagtgtaatgatttgctagtctcttcgaaaattcaaaagaatggagataacatattttgtattctaccta 45297224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 462
Target Start/End: Complemental strand, 50342403 - 50342307
Alignment:
Q  369 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    |||||||||||||||||||| |||   |||  ||| ||||||||||| ||||| ||||||||||| |||||| || | |||| ||||||||| ||||    
T  50342403 aagggaatgcacctctaagaggttcttttgagcttgatcatgctcctttgtcatttgaaacttgtcagttggtagcgaagtaagattaagttcaaag 50342307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 3162583 - 3162487
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaa 254  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||| || || |||| ||||||||||    ||||| ||||| ||||| ||||||||    
T  3162583 tattattatgtagtgtcattattttattggaatt-aagtttaattcatggtagtttgttgaagatgttttctttgaagtgtcttatacttaatgtaaa 3162487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 50342234 - 50342193
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  50342234 tgctcctctgtcaattgaaacttgtcagttggcatggcagta 50342193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 50342109 - 50342072
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggca 439  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  50342109 atcatgctcctctatcaattgaaacttgtcagttggca 50342072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 29787986 - 29787946
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcaggg 442  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  29787986 atcatgctcctatgtcaattgaaacttgtcagttggtaggg 29787946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 23 - 457
Target Start/End: Original strand, 8710966 - 8711402
Alignment:
Q  23 cgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagt 122  Q
    |||||||| ||||||||| | |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||  |||  ||||||||||||||||    
T  8710966 cgtgaggagcatgttctccaaatattatcaggagcgcatgttcccgaggattgagatggaagctacattgctgagattgcctaaagatattctcaagagt 8711065  T
Q  123 ttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatg 222  Q
    |||||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8711066 ttgattctaccataagattatgtttaggtagcatcattattatgtagtgtctt-attttgttggaatttaagtttaattcttgttaatttgcggaagatg 8711164  T
Q  223 ttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattggttg 322  Q
    ||||||||||| ||||| ||||||||||||| ||||| ||||||| |||||||| |||||||||| |||||||||||| |||||| ||||||| ||||||    
T  8711165 ttggtattgaagtgtcttatactgaatgtaaggatttgcaagcctatttgaaaagtcaaaagaatagataaaacatatattgtattctacctaatggttg 8711264  T
Q  323 tacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaa 419  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||   |||||||||||| ||||||||||||||||||    
T  8711265 tacaaattttttcattagattccttcatataagatgagtgtgacataagggaatgtacctctaagatattgttttgtacttgatcatgctcctctgtcaa 8711364  T
Q  420 ttgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||| |||| ||||| |||||||||| |||||||||    
T  8711365 ttgaaatttgtcagttgacagggcagtaagattaagtt 8711402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 430
Target Start/End: Complemental strand, 5973153 - 5972747
Alignment:
Q  26 gaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttg 125  Q
    ||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  5973153 gaggagcatgttctccaaatattatcaggaacgcatgttcccgaggattgagatggaagctacattgctgagatcgcctgaagatattctcaagagtttg 5973054  T
Q  126 attctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttg 225  Q
    ||||| |||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  5973053 attctaccataagattatgtttaggtagcatcattattatgtagtgtctt-attttgttggaatttaagtttaattcttgttaatttgcggaagatgttg 5972955  T
Q  226 gtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattggttgtac 325  Q
    |||||||| ||||| ||||||||||||| ||||  |||||||  ||||||| |||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  5972954 gtattgaagtgtcttatactgaatgtaaggattcgcaagcctagttgaaaagtcaaaagaatagataaaacatatgttgtattctacctaatggttgtac 5972855  T
Q  326 aaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattg 422  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||   |||||||||||| ||||||||| |||||||||||    
T  5972854 aaattttttcaccagattcctttatataagatgagtgtgacataagggaatgcacctctaagatattgttttgtacttgatcatgctcttctgtcaattg 5972755  T
Q  423 aaacttgt 430  Q
    ||| ||||    
T  5972754 aaatttgt 5972747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 14095712 - 14096145
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| || ||||||| ||||||||| | ||||  |||| | | |||| ||||||||||||||||||||| | | ||||||||||| |||| ||||||||    
T  14095712 gatgactgtgtgaggaccatgttctccatatatcgtcagcaccacatgttcccgaggattgagatggaagcttcgttgctgagatcgcctgtagatattc 14095811  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||||||||||||| ||||| || |||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||     
T  14095812 tcaagagtttgattatgccacaagattatgtttaggtagcatcattattatgtaatgtctttattttgtttgaatttaagtttaattcttgttagtttgt 14095911  T
Q  215 tgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacct 314  Q
     |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||| |||| | ||||||    
T  14095912 ggaagatgttggtattgaagtgtcttatactgaatgaaaagatttacaagcctctttgaaaggtcaaaataatggataaaacatatgttgttttctacct 14096011  T
Q  315 attggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctct 414  Q
    | |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||  |  ||      |||||||| |||||||| ||||    
T  14096012 aatggttgtacaaa-tttttcatcaaattccttcgtataagatgagtgggacataaggggatgcaattgaaa-----cttgtacttgatcatgcttctct 14096105  T
Q  415 gtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
     ||||||||||||||| ||||||| |||||||| ||||||    
T  14096106 ttcaattgaaacttgtcagttggctgggcagtaagattaa 14096145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 3097647 - 3097424
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| |||||||||| ||||||||| | |||||||| ||||| |||  |||||   ||| || |||||| ||  ||||||||||| |||| ||||||||    
T  3097647 gatgactgcgtgaggagcatgttctccaaatattatcgggaacacattttcccggtaattaagttggaagctatgttgctgagatcgcctgaagatattc 3097548  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||| ||||||||||||| | ||||||||||||||||||||| |||| || |||  ||||||||||||||||||||||| |||||||||||||| |||||    
T  3097547 tcaacagtttgattctgctagaaaattatgtttaggtagcatcattaatatgtacagtctttattttgttggaatttaaatttaattcttgttagtttgc 3097448  T
Q  215 tgaagatgttggtattgaaatgtc 238  Q
    ||||||||||| ||||||| ||||    
T  3097447 tgaagatgttgatattgaagtgtc 3097424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 21865029 - 21864806
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| |||||||||| ||||||||| | |||||||| ||||| |||| |||||   ||| || |||||| ||| |||  ||||||||||| | ||||||    
T  21865029 gatgactgcgtgaggagcatgttctccatatattatcgggaacacatgttcccggtaatttagttggaagctacgttgaagagatcacctgaatatattc 21864930  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||| | ||||||||||| | ||||||||||||||||||||| ||||||| ||    ||||||||||||||||||||||||||||||||||||| |||||    
T  21864929 tcaacaatttgattctgctagaaaattatgtttaggtagcatcattattatgtgcattctttattttgttggaatttaagtttaattcttgttagtttgc 21864830  T
Q  215 tgaagatgttggtattgaaatgtc 238  Q
    ||||||||||||||||||| ||||    
T  21864829 tgaagatgttggtattgaagtgtc 21864806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 283
Target Start/End: Complemental strand, 18744035 - 18743843
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    |||||||||||  ||| |||||||||| | ||||||||||  |||||| |||||| ||| ||| ||| ||||||| |||||||||||||||| |||||||    
T  18744035 ttgctgagatcgtctgaagatattctcgacagtttgattcctccataagattatgattatgtatcatcattattatgtagtgtctttattttcttggaat 18743936  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaa 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||| ||||||  ||||| ||||||| |||||||| ||||||    
T  18743935 ttaagtttaattcttgttagtttgctgaagatgttggtattgaagtgttttatacttaatgtagtgatttgcaagcct-tttgaaaagtcaaaa 18743843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 456
Target Start/End: Original strand, 24559940 - 24560332
Alignment:
Q  68 gaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgt 167  Q
    ||||||||||||| | | ||| |||||  |||| || | ||||||| |||||||||  ||||| ||| || |||| ||||||||||||| ||||||| |     
T  24559940 gaggattgagatgaatgctacgttgctatgatcgcccgaagatattatcaagagttccattcttccacaagattaagtttaggtagcatcattattatgc 24560039  T
Q  168 agtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcct 267  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||| ||||| |   ||||| ||| |||| ||    
T  24560040 agtgtctttattttgttggaatttaaatttaattcttgttagtttgctgaatatgttggtattgaagtgtcttatacttaggataaaggtttgcaagtct 24560139  T
Q  268 ctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc-tattggttgtacaaattttttcatcagattccttcatataagatgagtgggac 366  Q
     ||| |||| ||||||||||| | | |||| |   |||||  ||||  ||    | || |  ||||  ||||  |||||||  |||| |||||| |  ||    
T  24560140 ttttcaaaactcaaaagaatgaagagaacacaacatgtattttaccaaatcaactatataggttttcacatcgaattcctttttataggatgagcgtcac 24560239  T
Q  367 ataagggaatgcacctctaa---gatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagt 456  Q
    | |||||||||||| |||||   | ||||||||  || |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  24560240 agaagggaatgcacttctaaggtgttgttttgtgtttgatcatgctccgctgtcaattgaaacttgttagttggtagggcagtaagattaagt 24560332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 2402351 - 2402501
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||| |||| ||||| |||||| ||||     | ||||||| |||||| ||||||||||| ||||||| ||| |||||||  |||||||||||    
T  2402351 ttgctgagatcgcctgaagataatctcaacagtt-----cagccataagattatgattaggtagcatcattattatgtattgtctttgctttgttggaat 2402445  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatact 245  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  2402446 ttaagtttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatact 2402501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 30765062 - 30764947
Alignment:
Q  170 tgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctct 269  Q
    |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||  ||| || ||||| ||    
T  30765062 tgtctttattttgttggaatttaaattaaattcttgttagtttgctgaagatgttggtattgaagtgtcttatactgaatgtagtgatctataagcccct 30764963  T
Q  270 ttgaaaaatcaaaaga 285  Q
    ||||||| ||||||||    
T  30764962 ttgaaaagtcaaaaga 30764947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 17465224 - 17465106
Alignment:
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagc 265  Q
    |||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||  ||||| || ||    
T  17465224 gtagtgtctttattttgttggaatttaaattcaattcttattagtttgctgaagatgttggtattgaagtgtcttatactgaatgtagtgatttgcatgc 17465125  T
Q  266 ctctttgaaaaatcaaaag 284  Q
    | ||| ||||| |||||||    
T  17465124 cccttagaaaagtcaaaag 17465106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 287
Target Start/End: Original strand, 19242924 - 19243138
Alignment:
Q  70 ggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtag 169  Q
    ||||||||||||| | ||||||| |||||| |||   |||||||||||| | ||| ||| ||||| |  |||||||||||||| |||||||||   |||     
T  19242924 ggattgagatggatgctacattgttgagattaccataagatattctcaaaactttaattatgccagatgattatgtttaggtatcattattat---gtat 19243020  T
Q  170 tgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctct 269  Q
    ||||||||||||||||||||||||||||||| | ||  | |||||| |  ||| ||||||| || ||||  ||||| | ||||||| ||| |||| || |    
T  19243021 tgtctttattttgttggaatttaagtttaatccatggaagtttgctaagaatgatggtattaaagtgtcatatacttagtgtaaaggtttgcaagactat 19243120  T
Q  270 ttgaaaaatcaaaagaat 287  Q
    ||||||| ||||||||||    
T  19243121 ttgaaaactcaaaagaat 19243138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 33200341 - 33200455
Alignment:
Q  170 tgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctct 269  Q
    |||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||| ||||||| ||||| ||||||||||||  ||||| |||||||||    
T  33200341 tgtctttattttgttggagtttaagtt-aattcttattagtttgctgaagatgttgctattgaagtgtcttatactgaatgtagcgatttgcaagcctct 33200439  T
Q  270 ttgaaaaatcaaaaga 285  Q
     | |||| ||||||||    
T  33200440 ctaaaaagtcaaaaga 33200455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 20244291 - 20244452
Alignment:
Q  66 ccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattac 165  Q
    ||||||||||||||||| ||||| ||||| ||||| | || | | ||| | ||| |||||||||||||| || |||||||||| ||||||  || ||       
T  20244291 ccgaggattgagatggatgatacgttgctaagatcgcttgaataaattatgaagcgtttgattctgccacaagattatgtttatgtagcaccataat--- 20244387  T
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtatt 230  Q
    | |||||||||| |||||| |||||||||||||||| |||||| |||| |||| |||||||||||    
T  20244388 ggagtgtctttaatttgttagaatttaagtttaattattgttagtttgttgaaaatgttggtatt 20244452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 22138275 - 22138436
Alignment:
Q  66 ccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattac 165  Q
    ||||||||||||||||| ||||| ||||| ||||| | || | | ||| | ||| |||||||||||||| || |||||||||| ||||||  || ||       
T  22138275 ccgaggattgagatggatgatacgttgctaagatcgcttgaataaattatgaagcgtttgattctgccacaagattatgtttatgtagcaccataat--- 22138371  T
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtatt 230  Q
    | |||||||||| |||||| |||||||||||||||| |||||| |||| |||| |||||||||||    
T  22138372 ggagtgtctttaatttgttagaatttaagtttaattattgttagtttgttgaaaatgttggtatt 22138436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 457
Target Start/End: Original strand, 20244582 - 20244700
Alignment:
Q  343 tccttcatataagatgagtgggacataa-gggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggc 438  Q
    |||||| |||||||||||||  ||| || ||||||||| |||||||||   ||||||| ||| ||||||||||||||||||||||||||||| | |||||    
T  20244582 tccttcgtataagatgagtgtcacaaaaagggaatgcaactctaagattttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggc 20244681  T
Q  439 agggcagtatgattaagtt 457  Q
    ||||  ||| |||||||||    
T  20244682 agggttgtaggattaagtt 20244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 457
Target Start/End: Original strand, 22138566 - 22138684
Alignment:
Q  343 tccttcatataagatgagtgggacataa-gggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggc 438  Q
    |||||| |||||||||||||  ||| || ||||||||| |||||||||   ||||||| ||| ||||||||||||||||||||||||||||| | |||||    
T  22138566 tccttcgtataagatgagtgtcacaaaaagggaatgcaactctaagattttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggc 22138665  T
Q  439 agggcagtatgattaagtt 457  Q
    ||||  ||| |||||||||    
T  22138666 agggttgtaggattaagtt 22138684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 33200832 - 33200892
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  33200832 atcatactcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaag 33200892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 19243193 - 19243310
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||||||||| || |||| | |  ||||||  |||||||||||   |||| ||| ||||||||| ||||||||||||||||||| | ||||    
T  19243193 attccttcgtataagatgaatgtgacaaacgaaaatgcatttctaagatgttgttttgtgcttgatcatgctcatctgtcaattgaaacttgtcaattgg 19243292  T
Q  438 cagggcagtatgattaag 455  Q
    |||||||||| |||||||    
T  19243293 cagggcagtaggattaag 19243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 466
Target Start/End: Complemental strand, 21864705 - 21864577
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||||||| | ||  ||||||||||| ||||||||||||||||   ||||| |  ||| ||||| ||||||||||||||| ||| ||||||    
T  21864705 attccttcgtataagataaatgtcacataagggaaagcacctctaagatgttcctttgtattagatcgtgctcttctgtcaattgaaacatgtcagttgg 21864606  T
Q  438 cagggcagtatgattaagttaaaagaaac 466  Q
    ||| |||||| |||| | || ||||||||    
T  21864605 cagagcagtaagattcaatttaaagaaac 21864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 22962412 - 22962277
Alignment:
Q  176 tattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaa 275  Q
    ||||||||||||||| ||||||||||| || ||||||| |||||||||| | ||| || ||||| ||||| | ||||||| ||| |||| |  |||||||    
T  22962412 tattttgttggaatt-aagtttaattcatggtattttgttgaagatgtttgcattaaagtgtcttatacttagtgtaaaggtttgcaagtcgttttgaaa 22962314  T
Q  276 aatcaaaagaatggataaaacatattttgtatcctac 312  Q
    | || |||||||||| | |||| || |||||| ||||    
T  22962313 actcgaaagaatggaaagaacacatgttgtattctac 22962277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 312
Target Start/End: Original strand, 23825981 - 23826116
Alignment:
Q  176 tattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaa 275  Q
    ||||||||||||||| ||||||||||| || ||||||| |||||||||| | ||| || ||||| ||||| | ||||||| ||| |||| |  |||||||    
T  23825981 tattttgttggaatt-aagtttaattcatggtattttgttgaagatgtttgcattaaagtgtcttatacttagtgtaaaggtttgcaagtcgttttgaaa 23826079  T
Q  276 aatcaaaagaatggataaaacatattttgtatcctac 312  Q
    | || |||||||||| | |||| || |||||| ||||    
T  23826080 actcgaaagaatggaaagaacacatgttgtattctac 23826116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 5571298 - 5571380
Alignment:
Q  72 attgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagc 154  Q
    ||||||||| ||| ||  |||||||||||  ||| ||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  5571298 attgagatgaaagctatgttgctgagatcgactgaagacattctaaagagtttgattctgccacaagattatgtttaggtagc 5571380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 22962182 - 22962128
Alignment:
Q  403 tcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  22962182 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagtt 22962128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 23826211 - 23826265
Alignment:
Q  403 tcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  23826211 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagtt 23826265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 23608007 - 23607869
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    |||| ||||||||||| ||||||||||||||||||||||  |||| |  |  | |||||| |||   |||||||| ||| |||| || |||| |||| ||    
T  23608007 ttgcagagatcacctgaagatattctcaagagtttgatttagccagatgaagaagtttagatag---tattattatgtaatgtcgttcttttattgg-at 23607912  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattga 232  Q
    || |||||||||||| ||| |||||| ||||||||| ||||||    
T  23607911 tttagtttaattcttattagtttgctaaagatgttgatattga 23607869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 21864512 - 21864457
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||||||    
T  21864512 atcatgcacctctctcaattgaaacttgtcagttggtagggcagtaagattaagtt 21864457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 2402605 - 2402647
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt 392  Q
    ||||||||||||| ||| |||||||||||||||||||||||||    
T  2402605 tataagatgagtgagacgtaagggaatgcacctctaagatgtt 2402647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 454
Target Start/End: Original strand, 33200512 - 33200628
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtac---ttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| ||||||| |||||  ||  ||||||| |||||||||||| ||||| |     || ||| ||||||||||||||||||||||||| ||||||    
T  33200512 attccttcgtataagaggagtgtcaccgaagggaaagcacctctaagaggtttttttgagtttgatcgtgctcctctgtcaattgaaacttgtcagttgg 33200611  T
Q  438 cagggcagtatgattaa 454  Q
    || |||| || ||||||    
T  33200612 catggcaataagattaa 33200628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 30764703 - 30764663
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcaggg 442  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  30764703 atcatgctcctctgtcaattgaaacttgtcagttggtaggg 30764663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 3386354 - 3386269
Alignment:
Q  228 attgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc 313  Q
    |||||| ||||| ||| | | |||||| |||| |||| ||||||||||| ||||||||||| | | |||| ||||||||| |||||    
T  3386354 attgaagtgtcttatatttagtgtaaaaatttgcaagtctctttgaaaactcaaaagaatgaagataacacattttgtattctacc 3386269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 18743776 - 18743693
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatg---ttttgtacttcatcatgctcctctgtcaattgaaacttgt 430  Q
    ||||| ||||||| |||  ||||||||| || |||||||||   ||||||  || |||||||||||||||||||||||| ||||    
T  18743776 tataaaatgagtgtgacgaaagggaatgtacttctaagatgctgttttgtgtttgatcatgctcctctgtcaattgaaaattgt 18743693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 30764828 - 30764787
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    ||||||||| ||||||||||||||| | ||||||||||||||    
T  30764828 tgctcctctatcaattgaaacttgtcaattggcagggcagta 30764787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 452
Target Start/End: Original strand, 28718145 - 28718578
Alignment:
Q  23 cgtgaggaacatgttctcgagatattatcaggaacgcatggtcc---cgaggattgagatggaagatacattgctgagatcacctggagatattctcaag 119  Q
    |||||||| ||||||||| | ||||||||||||||||||||||    |||||||||||||||||| |||||||   ||||| |||| ||||||||||||     
T  28718145 cgtgaggagcatgttctccaaatattatcaggaacgcatggtcattacgaggattgagatggaagctacattg---agatcgcctgaagatattctcaac 28718241  T
Q  120 agtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagttt-aattcttgttattttgctgaa 218  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||    
T  28718242 agtttgattatgccagaaaattatgtttaggtagcatcattattatgtagtgtttttattttgttggaatttaagttttaattcttgttagtttgctgaa 28718341  T
Q  219 gatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattg 318  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||| ||||||| ||    
T  28718342 gatgttggtattgaagtgtcttatactgaatgtgaagatttgcaagcctatttgaaaagtcaaaagaatggataaaacatatgttgtattctacctaatg 28718441  T
Q  319 gttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctg 415  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||   |||||| ||||| ||||||||||||||    
T  28718442 gttgtacaaattttttcatcagattccttcgtataaaatgagtgggacataagggaatgcacctctaagatgttgttttatacttgatcatgctcctctg 28718541  T
Q  416 tcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  28718542 tcaattgaaacttgtcagttggcagggcagtaagatt 28718578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 457
Target Start/End: Original strand, 10975890 - 10976327
Alignment:
Q  24 gtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtt 123  Q
    ||||||| |||||||||   ||||  |||| | |||||| ||||||||||||||||||||| ||  |||||||||||  ||| | |||||||||||||||    
T  10975890 gtgaggagcatgttctctgtatatcgtcagcaccgcatgttcccgaggattgagatggaagctatgttgctgagatcgtctgaatatattctcaagagtt 10975989  T
Q  124 tgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgt 223  Q
    ||||||||||| || |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  10975990 tgattctgccacaagattatgtttatgtaacatcattattatgtagtgtctttattttgttggaatttaagtttaattcatgaaagtttgctgaagatgt 10976089  T
Q  224 tggtattgaaatgtctcatactgaatgtaaagatttacaagcct-ctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc-tattggtt 321  Q
    || |||| |||||||| ||||| |  |||||||||| | ||| | ||||||||| ||||||||||| | | |||| |  ||||||  ||||  ||    |    
T  10976090 tgttattaaaatgtcttatacttagcgtaaagatttgc-agcatcctttgaaaagtcaaaagaatgaagagaacacaacttgtattttaccaaatcaact 10976188  T
Q  322 gtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatg---ttttgtacttcatcatgctcctctgtca 418  Q
     || |  ||||  ||||  ||||| |  ||||||||||||| |||  |||| |||| ||||||||||||   |||||| ||| ||||||||| | |||||    
T  10976189 atatatgttttcgcatcgaattcccttgtataagatgagtgtgacgaaaggaaatgtacctctaagatgttattttgtgcttgatcatgctcatatgtca 10976288  T
Q  419 attgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||||||||||||||||||| ||||||  ||||||||    
T  10976289 attgaaacttgttagttggcagtgcagtagaattaagtt 10976327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 59 - 457
Target Start/End: Complemental strand, 16418192 - 16417790
Alignment:
Q  59 catggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcatta 158  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||| ||||| |    
T  16418192 catgttcccgaggattgagatggatgttacattgctgagatcacctgaagatattctcaagagtttgactctgccagaagattatgtttagggagcatca 16418093  T
Q  159 ttattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatt 258  Q
    |||||| | | |||| |||||||||| |||||||| |||||||| ||  | |||| |||  ||||||||||| || ||||| ||| | | ||||||  ||    
T  16418092 ttattatgcaatgtcattattttgtttgaatttaaatttaattcatggaagtttgttgacaatgttggtattaaagtgtcttatagttagtgtaaaagtt 16417993  T
Q  259 tacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc-tattggttgtacaaattttttcatcagattccttcatataagat 357  Q
    | |||| ||||||||||| ||||||||||| | | |||| |   |||||  ||||  |||   | || |  ||||| |||   |||||||| ||||||||    
T  16417992 tgcaagtctctttgaaaactcaaaagaatgaagagaacacaacatgtattttaccaaattaactatataggtttttacattgaattccttcgtataagat 16417893  T
Q  358 gagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    ||||| |||  | | |||||||  |||||||   |||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||| | ||||    
T  16417892 gagtgtgacgaacgtgaatgcatttctaagatgttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagagcagtaggcttaa 16417793  T
Q  455 gtt 457  Q
    |||    
T  16417792 gtt 16417790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 90 - 288
Target Start/End: Original strand, 19748213 - 19748411
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||| |||| |||||||||||| | |||||||| ||||||| |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||    
T  19748213 ttgctgagatcgcctgaagatattctcaacaatttgattccgccataagattatgattaggtagcgtcattattatgtattgtctttattttgttggaat 19748312  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||| |  |||||| ||| |||| || ||  |||| |||||||||||    
T  19748313 ttaactttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatacttagggtaaaggtttgcaagtctgttcaaaaactcaaaagaatg 19748411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 23228727 - 23228582
Alignment:
Q  94 tgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaa 193  Q
    ||||||||| || ||||||||| || |||||||||| || | ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  23228727 tgagatcacttgaagatattctgaacagtttgattccgctagaaaattatgattaggtagcattattaatatgtagtgtctttattttgttggaatttaa 23228628  T
Q  194 gtttaattcttgttattttgctgaagatgttggtattgaaatgtct 239  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||    
T  23228627 gtttaattcttgtttgtttgctgaagatgttgatattgaagtgtct 23228582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 31488141 - 31488321
Alignment:
Q  102 cctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaatt 201  Q
    |||| ||||||||| |||||||||||||| ||| || |||||||||||||||||| |||||||  || |||||||||||||||| |||||||||||||||    
T  31488141 cctgaagatattcttaagagtttgattctaccagaagattatgtttaggtagcatgattattatttaatgtctttattttgttgaaatttaagtttaatt 31488240  T
Q  202 cttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaa 282  Q
    ||||||| ||||||||| |||| || ||| || ||||| ||||| | ||||||||||||||||  | |||||||| |||||    
T  31488241 cttgttagtttgctgaatatgtcggcattaaagtgtcttatacttagtgtaaagatttacaagaatttttgaaaagtcaaa 31488321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 21293900 - 21294057
Alignment:
Q  16 atgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattct 115  Q
    |||| |||||||||| ||||| ||| ||||||||||||||||||||| |||||   | ||||||||||| ||| |||||||||||  ||| |||||||||    
T  21293900 atgactgcgtgaggagcatgtgctccagatattatcaggaacgcatgttcccggtaaatgagatggaagctacgttgctgagatcgtctgaagatattct 21293999  T
Q  116 caagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctt 175  Q
    ||  ||||||||||||||| ||||||||||||||||||||| || |||| | ||||||||    
T  21294000 ca--agtttgattctgccagaaaattatgtttaggtagcatcatgattaggaagtgtctt 21294057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 22858300 - 22858166
Alignment:
Q  146 ttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatact 245  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||| |||||  ||||    
T  22858300 ttaggtagcatcattattatgtattgtctttattttgttg-aatttaagtttaattcttgttagtttgcggaatatggtggtattgaagtgtcttgtact 22858202  T
Q  246 gaatgtaaagatttacaagcctctttgaaaaatcaa 281  Q
    |||||||  |||||  ||||||||||||||| ||||    
T  22858201 gaatgtagtgatttgtaagcctctttgaaaagtcaa 22858166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 15798129 - 15797992
Alignment:
Q  102 cctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgtt-ggaatttaagtttaat 200  Q
    |||| |||||||||||| |||||||||| |||| || |||||| |||||||||||  |||||| ||| ||||||||||||||| | ||||||||||||||    
T  15798129 cctgaagatattctcaacagtttgattccgccaaaagattatgattaggtagcatcgttattatgtattgtctttattttgttagaaatttaagtttaat 15798030  T
Q  201 tcttgttattttgctgaagatgttggtattgaaatgtc 238  Q
    |||||||| |||| |||||||||| |||| ||| ||||    
T  15798029 tcttgttagtttgttgaagatgttagtatcgaagtgtc 15797992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 31488389 - 31488499
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    ||||||| | ||| ||||||||||| |||||||||||||||||   |||| ||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  31488389 tataagaagtgtgtgacataagggagtgcacctctaagatgttgttttgtgcttgatcatgcttctctgtcaattgaaacttgttagttggcagtgcagt 31488488  T
Q  447 atgattaagtt 457  Q
    | |||||||||    
T  31488489 aggattaagtt 31488499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 37396844 - 37396967
Alignment:
Q  75 gagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtct 174  Q
    |||||||| | ||| |||||||||||||||| ||||||||||||||||||||||| || | | ||  ||||||||||||   |||||||| |||||||||    
T  37396844 gagatggatgctacgttgctgagatcacctgaagatattctcaagagtttgattcggctagataaagatgtttaggtag---tattattatgtagtgtct 37396940  T
Q  175 ttattttgttggaatttaagtttaattc 202  Q
    |||||| ||||||| |||||||||||||    
T  37396941 ttatttggttggaa-ttaagtttaattc 37396967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 7575857 - 7575789
Alignment:
Q  389 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7575857 tgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtatgattaagtt 7575789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 15797941 - 15797847
Alignment:
Q  371 gggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    |||||||||||||||||| |||   ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  15797941 gggaatgcacctctaagaggttcctttgaacttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaag 15797847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 25360466 - 25360339
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagattta 260  Q
    |||| |||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| ||||  |  |||||  |||     
T  25360466 attaggtagtgtccttattctgttggaatttaaattaaattcttgttagtttgctgaagatgttggtattgaagtgtcttatacatagggtaaaagtttg 25360367  T
Q  261 caagcctctttgaaaaatcaaaagaatg 288  Q
    |||| || |||||||| |||||||||||    
T  25360366 caagtctgtttgaaaactcaaaagaatg 25360339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 34595611 - 34595731
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||  ||||||||||||| |||  ||||||||||||||||||||||||   |||| ||| ||||||||||| ||||||||||||||||| ||||||    
T  34595611 attcctttgtataagatgagtgtgacgaaagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctttgtcaattgaaacttgtcagttgg 34595710  T
Q  438 cagggc-agtatgattaagtt 457  Q
    ||  || ||||||||||||||    
T  34595711 caatgcaagtatgattaagtt 34595731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 462
Target Start/End: Complemental strand, 23228468 - 23228372
Alignment:
Q  369 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    |||||||||||||||||||| |||   |||  ||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||    
T  23228468 aagggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgtgagttggtagggcagtaagattaagttcaaag 23228372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 13130967 - 13130898
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtatt 230  Q
    |||| ||| |||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||    
T  13130967 attaggtaatgtctttattttgttggagtttaaattaaattcttgttagtttgctgaagatgttggtatt 13130898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 11477645 - 11477590
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  11477645 atcatgctcctctgtcaattgaaacttgttagttggcagagcagtagaattaagtt 11477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 307
Target Start/End: Complemental strand, 26604597 - 26604451
Alignment:
Q  160 tattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagattt 259  Q
    ||||| || ||||| ||||||| ||| ||||| |||||| ||||||||| ||||||||||||||| | | |||| ||||| ||||| | ||||| | |||    
T  26604597 tattatgttgtgtcattatttttttg-aattttagtttagttcttgttagtttgctgaagatgtttgcaatgaagtgtcttatacttagtgtaatggttt 26604499  T
Q  260 acaagcctctttgaaaaatcaaaagaatggataaaacatattttgtat 307  Q
      ||| ||||||||||| ||||||||||| | | |||| |||||||||    
T  26604498 gtaagtctctttgaaaactcaaaagaatgaagagaacacattttgtat 26604451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 288
Target Start/End: Complemental strand, 7576150 - 7575962
Alignment:
Q  96 agatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagt 195  Q
    |||||||||  |||||||||||||||||| |||| ||||||  |  ||||||||||||   |||||||| | || |||||||||||||||||| ||||||    
T  7576150 agatcacctaaagatattctcaagagtttaattcggccatatgaagatgtttaggtag---tattattatgcagcgtctttattttgttggaa-ttaagt 7576055  T
Q  196 ttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    ||||||  || || |||| |||  || |||  |||||| ||| | ||||| | ||||||| ||| |||| |||||| |||| ||| |||||||    
T  7576054 ttaatttgtggtagtttgttgacaatattgacattgaagtgtgttatacttagtgtaaaggtttgcaagtctctttcaaaactcacaagaatg 7575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 36311644 - 36311596
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  36311644 tgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaa 36311596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 26604416 - 26604293
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcct----ctgtcaattgaaacttgttag 433  Q
    |||| ||| ||||| | ||||||||||||||| ||||||  |||||||||||   |||  ||  |||||||||||    |||||||||||||||||| ||    
T  26604416 attcattcgtataaaaagagtgggacataaggcaatgcatttctaagatgttgttttgagctggatcatgctcctagatctgtcaattgaaacttgtcag 26604317  T
Q  434 ttggcagggcagtatgattaagtt 457  Q
    ||||||| ||| ||||||||||||    
T  26604316 ttggcagagcaatatgattaagtt 26604293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 16417577 - 16417676
Alignment:
Q  189 tttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    ||||| || ||||||||  | |||||| || || |||||||| |||||||| ||||| | |||||| |||| ||||||||||| |||| |||||||||||    
T  16417577 tttaaattaaattcttgaaagtttgctcaaaatattggtattaaaatgtcttatacttagtgtaaaaatttgcaagcctctttaaaaactcaaaagaatg 16417676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 11477892 - 11477764
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||||| || |||| ||||||||||||||| ||||||| ||||| || || ||||||||  ||||||| |||||| ||||  ||||| | |||||||     
T  11477892 tattattatgttgtgt-tttattttgttggaa-ttaagttgaattcatggtagtttgctgagaatgttggcattgaattgtcatatacttagtgtaaagg 11477795  T
Q  257 tttacaagcctctttgaaaaatcaaaagaat 287  Q
    ||| |||| ||| ||||||| || |||||||    
T  11477794 tttgcaagtctccttgaaaactcgaaagaat 11477764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 31238204 - 31238242
Alignment:
Q  167 tagtgtctttattttgttggaatttaagtttaattcttg 205  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31238204 tagtgactttattttgttggaatttaagtttaattcttg 31238242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 22858083 - 22857996
Alignment:
Q  369 aagggaatgcacctctaagatgt---tttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatta 453  Q
    |||||||||||||||||||| ||   ||||   || ||| |||||||||||||| |||||||||| |||||||| ||||||| |||||    
T  22858083 aagggaatgcacctctaagaggtgcctttgagtttgatcgtgctcctctgtcaactgaaacttgtcagttggcaaggcagtaagatta 22857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 26604113 - 26604206
Alignment:
Q  220 atgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc 313  Q
    ||||||| |||||| ||||| ||||| |||||||| |||| |||| ||||||||||| |||||| |||  | | |||| ||||||||| |||||    
T  26604113 atgttggcattgaagtgtcttatacttaatgtaaaaatttgcaagtctctttgaaaactcaaaacaattaagagaacacattttgtattctacc 26604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 12067605 - 12067557
Alignment:
Q  166 gtagtgtctttattttgttggaatttaag-tttaattcttgttattttg 213  Q
    ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  12067605 gtagtgtctttattttgttggaatttacgttttaattcttgttagtttg 12067557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 28718760 - 28718621
Alignment:
Q  223 ttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctt-tgaaaaatcaaaagaatggataaaacatattttgtatcctacctattg-gt 320  Q
    |||| |||||| ||||| ||||| | ||||||||||| || || || | |||||| ||||||||||||||| |||| || ||| || ||||||| || ||    
T  28718760 ttggcattgaagtgtcttatacttagtgtaaagatttgca-gcgtcgtctgaaaactcaaaagaatggatataacacatgttgcattctacctaatgagt 28718662  T
Q  321 tgtacaaattttttcatcagattccttcatataagatgagt 361  Q
    ||| ||||||||  ||| | |||||||||||||| ||||||    
T  28718661 tgtgcaaattttcccattaaattccttcatataaaatgagt 28718621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 36311828 - 36311776
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgttattttg 213  Q
    |||| ||||||||||||||||||||||||||||  | ||||||||||| ||||    
T  36311828 attaggtagtgtctttattttgttggaatttaaaataaattcttgttagtttg 36311776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 15418432 - 15418353
Alignment:
Q  220 atgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacata 299  Q
    ||||||| |||||||||||| ||||| ||||||| |||||   || || |||||||| ||||||||||||| | ||||||    
T  15418432 atgttggcattgaaatgtcttatacttaatgtaatgatttgtcagtctatttgaaaactcaaaagaatggagagaacata 15418353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 22857914 - 22857868
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| ||||    
T  22857914 tgctcctttgtcaattgcaacttgtcagttggcagggcagtaagatt 22857868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 37397173 - 37397222
Alignment:
Q  405 atgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    |||||| ||||| ||||||||||||| ||||| || ||||||||||||||    
T  37397173 atgctcatctgttaattgaaacttgtcagttgacatggcagtatgattaa 37397222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 18921334 - 18921294
Alignment:
Q  198 aattcttgttattttgctgaagatgttggtattgaaatgtc 238  Q
    ||||||||||| |||| ||||||||||||||||||| ||||    
T  18921334 aattcttgttagtttgttgaagatgttggtattgaagtgtc 18921294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 19748697 - 19748597
Alignment:
Q  188 atttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaat 287  Q
    |||||| |||||||||||  | ||| | ||| ||||||| |||||| ||||  ||||| | |||||| |||| |||| || |||||||| ||||||||||    
T  19748697 atttaaatttaattcttgaaagttttccgaaaatgttggcattgaagtgtcgtatacttagtgtaaaaatttgcaagtctgtttgaaaactcaaaagaat 19748598  T
Q  288 g 288  Q
    |    
T  19748597 g 19748597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 31238421 - 31238469
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    ||||||| ||||||||||||||||| |||||| |||||| || ||||||    
T  31238421 tgctcctttgtcaattgaaacttgtcagttgggagggcaataagattaa 31238469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 27 - 457
Target Start/End: Original strand, 27783534 - 27783964
Alignment:
Q  27 aggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctc-aagagtttg 125  Q
    |||||||||||||| ||||||  ||||||||||||| |||| |||||||||||||||  ||| ||||||||||| | || |||||||||  |||||||||    
T  27783534 aggaacatgttctccagatatcgtcaggaacgcatgttcccaaggattgagatggaatctacgttgctgagatcgc-tgaagatattctttaagagtttg 27783632  T
Q  126 attctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttg 225  Q
    |||||| || || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  27783633 attctgtcacaagattatgtttaggtagcatcattattatgtagtgtctttattttgttggaatttaagttcaattcttgttagtttgcggaagatgttg 27783732  T
Q  226 gtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattggttgtac 325  Q
    |||||||||||||| ||||||||||||||||||| ||||||  ||| |||| ||||||||||||||||||||||| |||||| |||||||  ||||||||    
T  27783733 gtattgaaatgtcttatactgaatgtaaagatttgcaagccaatttaaaaagtcaaaagaatggataaaacatatgttgtattctacctaacggttgtac 27783832  T
Q  326 aaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaa 425  Q
     |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  27783833 caattttttcatcagattccttcgtatatgatgagtgggacataagggaatgcacctctaagatgttttgtacttgatcataatcctctgtcaattgaaa 27783932  T
Q  426 cttgttagttggcagggcagtatgattaagtt 457  Q
    ||||| |||||||||| ||||| |||||||||    
T  27783933 cttgtcagttggcaggtcagtaagattaagtt 27783964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 10204657 - 10204917
Alignment:
Q  24 gtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtt 123  Q
    ||||||| ||||||||| ||||||||| ||||| ||||| ||| |   ||| ||||||||| ||| ||||||||||| |||| ||||||||| || | ||    
T  10204657 gtgaggagcatgttctccagatattataaggaatgcatgttcctggtaattaagatggaagctacgttgctgagatcgcctgaagatattctaaacaatt 10204756  T
Q  124 tgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgt 223  Q
    ||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  10204757 tgattctgcca-aaaattatgtttaggtagcatcattatgatgtagtgtctttattttgttggaatttaagtttaattctagttagtttgctgaagatgt 10204855  T
Q  224 tggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    ||| |||||| ||||| ||||| ||||||  ||||| |||||||||||||||| ||||||||    
T  10204856 tggcattgaattgtcttatactaaatgtagtgatttgcaagcctctttgaaaagtcaaaaga 10204917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 24630060 - 24629788
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| || ||||||| ||||||||| | |||| ||||  |  | ||| ||||||||||||||| ||||| ||  ||||||||||| |||| ||||||||    
T  24630060 gatgactgggtgaggagcatgttctccatatatcatcaacattgtatgttcccgaggattgagacggaagctatgttgctgagatcgcctgaagatattc 24629961  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||  ||||||     
T  24629960 tcaagagtttgattctgccacaagattatgtttaggtagcatcattattatgtagtgtctttattttgttggaatttaagttgaattcatgaaattttgt 24629861  T
Q  215 tgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaat 287  Q
    |||||||||||||||| || ||||| || || |  |||||||||| |||| ||||||||||| ||||||||||    
T  24629860 tgaagatgttggtattaaagtgtcttatgcttagcgtaaagatttgcaagactctttgaaaagtcaaaagaat 24629788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 94 - 457
Target Start/End: Original strand, 26140305 - 26140671
Alignment:
Q  94 tgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaa 193  Q
    ||||||| |||| ||||||||| ||||||||||||||  || ||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||     
T  26140305 tgagatcgcctgaagatattcttaagagtttgattctttcaaaaaattatgtttaggtagcatcattattatgtattgtatttattttgttggaatttat 26140404  T
Q  194 gtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataa 293  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||||| ||||| | |||| || |||  |||  |||||||||| || || ||||| | |     
T  26140405 gtttaattcttgttagtttactgaatatgttggcattgaaatgtcttatacttagtgtagagttttgtaagattctttgaaaagtc-aatgaatgaagag 26140503  T
Q  294 aacatattttgtatcctacc-tattggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaaga---t 389  Q
    |||| |   |||||  ||||  ||| | | ||    ||||  ||||  |||||||  ||||||||||||| ||| ||||||||| |||||||||||   |    
T  26140504 aacacaacatgtattttaccgaattagctatatttgttttcacatcgaattcctttgtataagatgagtgtgacgtaagggaatacacctctaagatgtt 26140603  T
Q  390 gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||| ||| || |||||||||| | ||||||||| ||| |||| |||| ||| ||||||||||||    
T  26140604 gttttgtgcttgataatgctcctctattaattgaaacatgtcagtttgcagtgcaatatgattaagtt 26140671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 457
Target Start/End: Complemental strand, 32108884 - 32108581
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||| | |||||||| |||||||||||||||| ||||||||||  || || |||| ||||| |||| | |||||| ||||| ||||| | |||||||     
T  32108884 tattataatgtagtgtcattattttgttggaatt-aagtttaatttatggtagtttgttgaagttgtttgcattgaagtgtcttatacttagtgtaaagt 32108786  T
Q  257 tttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctaccta-ttggttgtacaaattttttcatcagattccttcatataag 355  Q
    |||||||| ||||||||||| || ||||||||||||||||| || |||||| ||||| | |    | || |  || |  ||||  |||| ||| ||||||    
T  32108785 tttacaagtctctttgaaaactcgaaagaatggataaaacacatgttgtattctaccgagtcaactatataggttctcacatcgaattcattcgtataag 32108686  T
Q  356 atgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    ||||||| |||| | | |||||||  |||||||   |||||||  ||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  32108685 atgagtgtgacaaacgagaatgcatttctaagacgttgttttgagcttgatcatgctcctctgtcaattgaaacttgtcagttgccagggcagtaggatt 32108586  T
Q  453 aagtt 457  Q
    |||||    
T  32108585 aagtt 32108581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 456
Target Start/End: Complemental strand, 12785237 - 12784868
Alignment:
Q  88 cattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttgga 187  Q
    ||||||| |||||||||| |||||||  ||||||||||||||  | | |  |  |||||||||||  ||||||||   ||||||| ||||||||||||||    
T  12785237 cattgcttagatcacctgaagatattaacaagagtttgattcgactagatgaagatgtttaggtaatattattat---gtagtgtgtttattttgttgga 12785141  T
Q  188 atttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaa-gaa 286  Q
    ||| ||||||||||| || || |||| |||| ||||||| |||||| ||| | ||||| | ||||||| ||| |||| |||||| |||| |||||| |||    
T  12785140 att-aagtttaattcatgatagtttgatgaaaatgttggcattgaagtgtgttatacttagtgtaaaggtttgcaagtctctttcaaaactcaaaaggaa 12785042  T
Q  287 tggataaaacatattttgtatcctacc-tattggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctcta 385  Q
    || | | || | |   ||||| |||||  ||    | || |  ||||  ||||| ||| |||| ||||||||||||| |||| | |||||||||  ||||    
T  12785041 tgaagagaatacaacatgtattctaccgaatcaactatatacgttttcacatcaaatttcttcgtataagatgagtgtgacaaacgggaatgcatttcta 12784942  T
Q  386 aga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagt 456  Q
    |||   |||||||  ||| ||||||||||| ||| ||||||||||||| |||||||||  ||||||||||||||    
T  12784941 agatgttgttttgagcttgatcatgctcctttgttaattgaaacttgtcagttggcagaccagtatgattaagt 12784868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 12504744 - 12504663
Alignment:
Q  158 attattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtct 239  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||| || |||||| |||||    
T  12504744 attattatgtagtgtctttattttgttggaatttaagtttaattcttgttagtttgccgactatgtaggcattgaagtgtct 12504663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 8751836 - 8751989
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| ||||| |||| |||||| || ||||||| ||||||||||||  ||||||||||||||||||||| ||| ||| |||||||   |  |||||||     
T  8751836 gatgactgcgtaaggagcatgttttccagatattgtcaggaacgcatattcccgaggattgagatggaagttacgttgttgagatcgaat--agatattt 8751933  T
Q  115 tcaagagtttgattctg------ccataaaattatgtttaggtagcattattatta 164  Q
    |||| ||||||||| ||      ||| ||||||||||||||||||||| |||||||    
T  8751934 tcaacagtttgattatgccaaaaccagaaaattatgtttaggtagcatcattatta 8751989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 22843056 - 22843012
Alignment:
Q  403 tcatgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22843056 tcatgctcctctgtcaattgaaacttgttagttggcagggcagta 22843012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 22843367 - 22843234
Alignment:
Q  94 tgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaa 193  Q
    ||||||| |||| || |||||||||||||||||||| |||| |  |  |||||||||||| |||||    | || ||||| ||||||||||||| ||  |    
T  22843367 tgagatcgcctgaagttattctcaagagtttgattcggccagacgaagatgtttaggtagtattat----atgttgtgtcattattttgttggattt--a 22843274  T
Q  194 gtttaattcttgttattttgctgaagatgttggtattgaa 233  Q
    ||||||||||| ||| ||||||||||||||||| ||||||    
T  22843273 gtttaattcttcttagtttgctgaagatgttggcattgaa 22843234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 24629725 - 24629615
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    ||||||||||||| ||   |||| |||||||| | ||||||||   ||||  || ||||||||||||||||||||||||||||| |||| | || |||||    
T  24629725 tataagatgagtgtgatgaaaggcaatgcaccccaaagatgttgttttgtgtttgatcatgctcctctgtcaattgaaacttgtcagttagtagtgcagt 24629626  T
Q  447 atgattaagtt 457  Q
    | |||||||||    
T  24629625 aagattaagtt 24629615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 3589139 - 3589099
Alignment:
Q  198 aattcttgttattttgctgaagatgttggtattgaaatgtc 238  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  3589139 aattcttgttattttggtgtagatgttggtattgaagtgtc 3589099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 457
Target Start/End: Complemental strand, 21760514 - 21760075
Alignment:
Q  23 cgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagt 122  Q
    |||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||   || ||| |||||||  ||| |||||||||||| |||    
T  21760514 cgtgaggaacatgttctctagatattataaggaacacatgttcccgaggattgagatggaaaccacgttgatgagatcgtctgaagatattctcaacagt 21760415  T
Q  123 ttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatg 222  Q
    |||||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||    
T  21760414 ttgattctaccatataattatgtttaggtagcatcattattatgtagtgtctttattttattggaatttaagtttaattcttattagtttgttgaagatg 21760315  T
Q  223 ttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctat---tgg 319  Q
    ||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||   |||    
T  21760314 ttggtattgaagtgtcttatattgaatgtaaagatttgcaagcctctttgaaaagtcaaaagaattgataaaacatatgttgtattctacctatgcatgg 21760215  T
Q  320 ttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgt 416  Q
    |||||||||  |||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||   |||||||||||| ||||||| |||||||    
T  21760214 ttgtacaaaaattttcatcagattccttcgtataagataagtggg-gataagggaatgcacctctaagatgttgttttgtacttgatcatgcccctctgt 21760116  T
Q  417 caattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||||||||||| ||||||||||||| || |||||||||    
T  21760115 caattgaaacttgtcagttggcagggcaataagattaagtt 21760075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 11789284 - 11789010
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| |||| ||||||||||||||| | ||||||| |||||| |||| ||||    ||||||||| |||  || ||| ||||||| |||| ||||||||    
T  11789284 gatgactgcgagaggaacatgttctccatatattataaggaacacatgttcccagtaattgagatgcaagccacgttgttgagatcgcctgaagatattc 11789185  T
Q  115 tcaagagtttgattctgccataaaattatgtt----taggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttatt 210  Q
    | || ||||||||||||||| |||||||||||    ||| |||||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||||| |    
T  11789184 taaacagtttgattctgccagaaaattatgttgaagtagctagcatcattgttatgtagagtctttattttgttggaattaaagtttaattcttgttagt 11789085  T
Q  211 ttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    || |||||||||||||||||||| ||||| ||||||||||||  ||||| |||||||||||||||| ||||||||    
T  11789084 ttactgaagatgttggtattgaagtgtcttatactgaatgtagtgatttgcaagcctctttgaaaagtcaaaaga 11789010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 19262472 - 19262274
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    |||||||||||| ||| |||||||||||| |||||||||| |||  || |||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  19262472 ttgctgagatcaactgaagatattctcaacagtttgattccgcctgaagattatgattaggtagcatcattattatgtagtgtctttattttgttggaat 19262373  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||| |  |||||| ||| ||||  | |||||||| |||||||||||    
T  19262372 ttaagtttaattcttgttagtttgctaaagatgttggtattgaagtgtcttatacttagggtaaaggtttgcaagtttgtttgaaaactcaaaagaatg 19262274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 59 - 288
Target Start/End: Original strand, 26793432 - 26793657
Alignment:
Q  59 catggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcatta 158  Q
    |||| |||||||||| ||||||||   ||||||||||||||| || | ||||||||||||||||||||||| |||| |  |  ||||||| ||||   ||    
T  26793432 catgttcccgaggatcgagatggattctacattgctgagatcgccagaagatattctcaagagtttgattcggccaaatgaagatgtttatgtag---ta 26793528  T
Q  159 ttattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatt 258  Q
    |||||| || ||||| |||||||||||| |||| |||||||||||||||| |||||||||||||| ||||||| | ||||| ||||| || |||||| ||    
T  26793529 ttattatgttgtgtcattattttgttgg-attttagtttaattcttgttagtttgctgaagatgtcggtattgcagtgtcttatacttaacgtaaaggtt 26793627  T
Q  259 tacaagcctctttgaaaaatcaaaagaatg 288  Q
    | |||| |||||| |||  ||| |||||||    
T  26793628 tgcaagtctctttcaaagttcacaagaatg 26793657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 457
Target Start/End: Complemental strand, 39899878 - 39899590
Alignment:
Q  169 gtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctc 268  Q
    ||||| ||||||||||||| |||| ||||||||||||||| |||  ||||||||||| ||||||| ||| | ||||| | ||||||| ||| |||| |||    
T  39899878 gtgtccttattttgttggatttta-gtttaattcttgttagtttattgaagatgttgatattgaagtgttttatacttagtgtaaaggtttgcaagtctc 39899780  T
Q  269 tttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattggt-tgtacaaattttttcatcagattccttcatataagatgagtgggaca 367  Q
    |||||||| ||||||||||| | | |||| |||||||||  |||  | |    | ||   ||| |  ||||  |||||||| ||||||||||||| ||||    
T  39899779 tttgaaaactcaaaagaatgaagagaacacattttgtattatacaaaatcaactatattgattctcacatcgaattccttcgtataagatgagtgtgaca 39899680  T
Q  368 taagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
     |   ||||||| ||||||||||||||  |||| || ||||| ||||||||||||||||||||||||||||| | || ||||||||||||    
T  39899679 aacaagaatgcatctctaagatgtttttaacttgatgatgcttctctgtcaattgaaacttgttagttggcatgacaatatgattaagtt 39899590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 48706705 - 48706595
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||   |||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  48706705 tataagatgagtgagacgtaagggaatgcacatctaagatgttgttttgtgcttaatcatgctcctctatcaattgaaacttgttagttggcagtgcagt 48706606  T
Q  447 atgattaagtt 457  Q
    | || ||||||    
T  48706605 aggagtaagtt 48706595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 48706968 - 48706770
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgc------cataaaattatgtttaggtagcattattattacgtagtgtctttatttt-g 182  Q
    |||||||||||  ||| ||||||||||||||||||||||||||      || || |||||||||||||    | ||||||| ||| |||||||||||| |    
T  48706968 ttgctgagatcgtctgaagatattctcaagagtttgattctgctagaaccagaagattatgtttaggtttt-tcattattatgtaatgtctttatttttg 48706870  T
Q  183 ttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaa 282  Q
    |||||||||||||||||||||||||| |||| |||| ||||||| | |||| ||||| ||||| | |||| |||||| ||||  |||||||||| |||||    
T  48706869 ttggaatttaagtttaattcttgttagtttgttgaatatgttggcaatgaagtgtcttatacttagtgtagagatttccaagattctttgaaaagtcaaa 48706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 27800062 - 27800181
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgta---cttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    ||||||| ||||  ||||||||  ||| |||||||||||  ||||||||||| | |    ||| |||||| |||||||||||||||||||||| ||||||    
T  27800062 attcctttatattggatgagtgtcacaaaagggaatgcatttctaagatgttgtttcgagcttgatcatgttcctctgtcaattgaaacttgtcagttgg 27800161  T
Q  438 cagggcagtatgattaagtt 457  Q
    ||||| ||||||||| ||||    
T  27800162 cagggaagtatgattgagtt 27800181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 15471674 - 15471807
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgcca------taaaattatgtttaggtagcattattattacgtagtgtctttattttgt 183  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||      ||| || ||| ||||||    | |||| || ||||||||||||||||||    
T  15471674 ttgctgagatcgcctgaagatattctcaagagtttgattatgccagaaccataagataatgattaggtttt-tcattactatgtagtgtctttattttgt 15471772  T
Q  184 tggaatttaag-tttaattcttgttattttgctga 217  Q
    || |||||||| |||||||||||||| ||||||||    
T  15471773 tgcaatttaagttttaattcttgttagtttgctga 15471807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 11788954 - 11788835
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    ||||||||||||| ||||||||  ||| ||| ||||||||||||||||   | |||||  ||| || ||||||||| |||||||||||||| | | ||||    
T  11788954 attccttcatataggatgagtgtaacagaagagaatgcacctctaagaggttcttttgagcttgattatgctcctccgtcaattgaaacttatcatttgg 11788855  T
Q  438 cagggcagtatgattaagtt 457  Q
    || |||||||  ||||||||    
T  11788854 caaggcagtaaaattaagtt 11788835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 462
Target Start/End: Complemental strand, 27574977 - 27574917
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    ||||||||||||||||| |||||| |||| ||||||||||| |||| ||||||||| ||||    
T  27574977 atcatgctcctctgtcatttgaaagttgtcagttggcaggggagtaagattaagttcaaag 27574917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 27799899 - 27799984
Alignment:
Q  178 ttttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaag 264  Q
    |||||||||| |||| ||||||||||||||| |||| ||||||||| || |||||| ||||| ||||| | ||||||| ||| ||||    
T  27799899 ttttgttggatttta-gtttaattcttgttagtttgttgaagatgtcggcattgaagtgtcttatacttattgtaaaggtttgcaag 27799984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 19262153 - 19262100
Alignment:
Q  404 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||||| ||||||||||||| |||| |  |||||||| |||||||||    
T  19262153 catgctcctctgttaattgaaacttgtcagtttgtcgggcagtaggattaagtt 19262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 90 - 457
Target Start/End: Complemental strand, 27317884 - 27317508
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgcc------ataaaattatgtttaggtagcattattattacgtagtgtctttattttgt 183  Q
    ||||||||||| || | |||| ||||||| ||||||||||||||      | || |||||||||||||||||| ||||||| ||||||||||||||||||    
T  27317884 ttgctgagatcgccggaagatcttctcaatagtttgattctgccgaaaccagaagattatgtttaggtagcatcattattatgtagtgtctttattttgt 27317785  T
Q  184 tggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaa 283  Q
    |||||||||| ||||| |||||||| ||||| ||| ||||||||||| || ||||| ||  ||||||||||||||| | | |||||||||||| ||||||    
T  27317784 tggaatttaaatttaaatcttgttagtttgcggaatatgttggtattaaagtgtcttatcatgaatgtaaagatttgctaccctctttgaaaagtcaaaa 27317685  T
Q  284 gaatggataaaacatattttgtatcctacctattggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctc 383  Q
    ||||||||||||||||| |||||| ||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27317684 gaatggataaaacatatgttgtattctaccttatggttgtacaaattctttcatcagattccttcgtataagatgagtgggacataagggaatgcacctc 27317585  T
Q  384 taaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||   |||||||| ||| | ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  27317584 taagatgttgttttgtgcttgaacatgctcctctgtcaattgaaacttgtcagttggcagggtagtaggattaagtt 27317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 12309738 - 12309466
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| || ||||||| |||||||||   ||||  |||| | |||||| |||||||||||||||||||||  |  ||||||||||| | || ||||||||    
T  12309738 gatgactgtgtgaggagcatgttctccgtatatcgtcagcaccgcatgttcccgaggattgagatggaagccaggttgctgagatcgcatgaagatattc 12309639  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||  | |||||    
T  12309638 tcaagagtttgattctgccacaagattatgtttaggtagcatcattattatgtattgtctttattttgttggaatttaagtttaattcatggaagtttgc 12309539  T
Q  215 tgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaat 287  Q
    |||  |||||||||||||| ||||| |||||   |||| |||||| |||| |||||| |||| ||||| ||||    
T  12309538 tgagaatgttggtattgaagtgtcttatacttggtgtagagatttgcaagactcttttaaaagtcaaacgaat 12309466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 7066731 - 7066946
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| || ||| ||| ||||||||| | ||||  |||| | |||||| ||| ||||||||||||||||| ||| ||||||||||| |||| | ||||||    
T  7066731 gatgattgagtgtggagcatgttctccatatatcgtcagcaccgcatgttcctgaggattgagatggaagctacgttgctgagatcgcctgaatatattc 7066830  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    | ||||| |||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | |||||    
T  7066831 ttaagagcttgattctgccacaagattatgtttaggtagcatcattattatgtagtgtctttattttgttggaatttaagtttaattcatgaaagtttgc 7066930  T
Q  215 tgaagatgttggtatt 230  Q
    |  |||||||||||||    
T  7066931 tacagatgttggtatt 7066946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 285
Target Start/End: Original strand, 31267226 - 31267420
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||| ||||| |||| ||||||||| || |||||||||| || | || |||||| |||||| |||| ||||||| |||||||||||||||||| |||||    
T  31267226 ttgctaagatcgcctgaagatattct-aacagtttgattcagctagaagattatgattaggtggcatcattattatgtagtgtctttattttgtgggaat 31267324  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    |||||||||||||||| || ||||||||||||| |||||||||| | ||| ||||||| ||||  ||||| |||||||||||||||| ||||||||    
T  31267325 ttaagtttaattcttgatagtttgctgaagatgatggtattgaagtttcttatactgattgtagtgatttgcaagcctctttgaaaagtcaaaaga 31267420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 16886630 - 16886364
Alignment:
Q  21 tgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaaga 120  Q
    |||||||||| |||||||||   |||| |||||    ||||| ||| |||||||||| |||| | ||||||| | || || |||| ||||||| | ||||    
T  16886630 tgcgtgaggagcatgttctccgtatatcatcagcgcggcatgttcctgaggattgagctggatgctacattgttaagttcgcctgaagatattataaaga 16886531  T
Q  121 gtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaaga 220  Q
    |||||||  ||||| || |||||||||||||||||| ||||||| ||| |||||||||||| || |||||||| ||||||| |||| | |||||||||||    
T  16886530 gtttgatcatgccacaagattatgtttaggtagcatcattattatgtactgtctttattttctttgaatttaaatttaattattgtcagtttgctgaaga 16886431  T
Q  221 tgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaat 287  Q
    ||||||||||||| ||||| ||||| |  |||||| ||| |||| || |||||||| ||||||||||    
T  16886430 tgttggtattgaagtgtcttatacttagggtaaaggtttgcaagtctgtttgaaaactcaaaagaat 16886364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 87 - 288
Target Start/End: Original strand, 12083077 - 12083278
Alignment:
Q  87 acattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttgg 186  Q
    |||||||||||||| |||| |||||||||||| |||||| ||| |||  || |||||| ||||||||||| ||||||| ||||||||||||||||||| |    
T  12083077 acattgctgagatcgcctgaagatattctcaacagtttggttccgcctgaagattatgattaggtagcatcattattatgtagtgtctttattttgttcg 12083176  T
Q  187 aatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaa 286  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||| ||||  ||||| |  |||||  ||| |||| || ||||||||  ||||||||    
T  12083177 aatttaagtttaattcttgtttgttttctgaagatgttggtattgaagtgtcgtatacttagggtaaatgttttcaagtctgtttgaaaacccaaaagaa 12083276  T
Q  287 tg 288  Q
    ||    
T  12083277 tg 12083278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 7414259 - 7414116
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||| |||| | |||||||||| |||||||||  |||| || |||||| ||||||||||| ||||||| ||||||||||||||||||  ||||    
T  7414259 ttgctgagatcgcctgaaaatattctcaacagtttgatttcgccagaagattatgattaggtagcatcattattatgtagtgtctttattttgtgtgaat 7414160  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaa 233  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  7414159 ttaagtttaattcttgttagtttgctgaagatgttggtattgaa 7414116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 28066404 - 28066601
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    |||||||||||  ||| |||||||||||| |||||||||| |||| || ||  || ||||||| ||| ||||||| ||||||||||||||||||||||||    
T  28066404 ttgctgagatcgtctgaagatattctcaaaagtttgattccgccagaacatcgtgattaggtaacatcattattatgtagtgtctttattttgttggaat 28066503  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaat 287  Q
    ||||||||||||||||||| ||| |||||||||| || ||| || |||   ||||| |  |||||| ||| |||| || |||||||| ||||||||||    
T  28066504 ttaagtttaattcttgttagtttactgaagatgtcggaattaaagtgtagtatacttagggtaaaggtttgcaagtctatttgaaaactcaaaagaat 28066601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 3924925 - 3925062
Alignment:
Q  122 tttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagat 221  Q
    ||||||||| ||| |||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  3924925 tttgattctaccacaaaattatgtttaggtggcatcattattatgtattgtctttattttgttggaatttaagtttaattcttattagttcgctgaagat 3925024  T
Q  222 gttggtattgaaatgtctcatactgaatgtaaagattt 259  Q
    ||||||||| || ||||  ||||| |  ||||||||||    
T  3925025 gttggtattaaagtgtcatatacttagcgtaaagattt 3925062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 462
Target Start/End: Complemental strand, 7414026 - 7413896
Alignment:
Q  335 catcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgtt 431  Q
    ||||| |||||||| |||| ||||||||  ||   |||||||||||||||||||||||   |||  ||| |||||||||||||||||||||||||||||     
T  7414026 catcaaattccttcgtatatgatgagtgtcacgacagggaatgcacctctaagatgttattttgagcttgatcatgctcctctgtcaattgaaacttgta 7413927  T
Q  432 agttggcagggcagtatgattaagttaaaag 462  Q
    ||||||||||||| || ||||||||| ||||    
T  7413926 agttggcagggcaataagattaagttcaaag 7413896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 26926628 - 26926723
Alignment:
Q  68 gaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattatt 163  Q
    ||||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||||||||||||| || ||||| ||||||| |||| ||||||    
T  26926628 gaggattgagatggaagctgcattgatgagatcgcctgaagatattctcaagagtttgattctgccacaagattatatttaggttgcatcattatt 26926723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 31267476 - 31267593
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| ||||||| |||||  ||  |||||||||||||||||||| |||   |||  ||| ||||||||||||||||||||||||||||||||||||    
T  31267476 attccttcgtataagacgagtgtcacgaaagggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttgg 31267575  T
Q  438 cagggcagtatgattaag 455  Q
    |||| ||||| |||||||    
T  31267576 caggacagtaagattaag 31267593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 349 - 457
Target Start/End: Original strand, 3925131 - 3925242
Alignment:
Q  349 atataagatgagtgggacataagggaatgcacctctaagatg---ttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcag 445  Q
    |||||||||||||||||| ||||||| |||||||||||||||   |||||| ||| |||||| || | ||||||||||||||||||||||||||  || |    
T  3925131 atataagatgagtgggacgtaagggattgcacctctaagatgttattttgtgcttgatcatgttcttatgtcaattgaaacttgttagttggcaatgcgg 3925230  T
Q  446 tatgattaagtt 457  Q
    || |||||||||    
T  3925231 taggattaagtt 3925242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 16651335 - 16651188
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||||| || ||||| ||||||||||| || ||| |||||||| | |||| ||||||||||||||||| |||||| ||||| ||||| | |||||||     
T  16651335 tattattatgttgtgtcattattttgttgtaactta-gtttaattat-gttagtttgctgaagatgttggcattgaactgtcttatacttagtgtaaagg 16651238  T
Q  257 tttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgta 306  Q
    ||| |||| |||||||| || ||||||||||| ||| |||| ||||||||    
T  16651237 tttgcaagtctctttgataactcaaaagaatgaatataacacattttgta 16651188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 17625695 - 17625548
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||||| || ||||| ||||||||||| || ||| |||||||| | |||| ||||||||||||||||| |||||| ||||| ||||| | |||||||     
T  17625695 tattattatgttgtgtcattattttgttgtaactta-gtttaattat-gttagtttgctgaagatgttggcattgaactgtcttatacttagtgtaaagg 17625598  T
Q  257 tttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgta 306  Q
    ||| |||| |||||||| || ||||||||||| ||| |||| ||||||||    
T  17625597 tttgcaagtctctttgataactcaaaagaatgaatataacacattttgta 17625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 10546065 - 10546184
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||  |||| |||||||  ||| |||||||||||||||||||||||||   |||| | | ||||||||||||||||||||||||||||| ||||||    
T  10546065 attcctttgtatatgatgagtatgacttaagggaatgcacctctaagatgttgttttgtgcatgatcatgctcctctgtcaattgaaacttgtcagttgg 10546164  T
Q  438 cagggcagtatgattaagtt 457  Q
    ||  ||||||  ||||||||    
T  10546165 cattgcagtaaaattaagtt 10546184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 5282517 - 5282460
Alignment:
Q  181 tgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtc 238  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  5282517 tgttggaatttaagtctaattcttgttagtttgctgaagatgttggtattgaagtgtc 5282460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 26926869 - 26926750
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||| ||| |||| ||||||||  ||||| |||||||||| |||||||||||   |||  |||  |||||||||||||||||||||||||||| ||||||    
T  26926869 attctttcgtatatgatgagtgtcacatatgggaatgcacttctaagatgttgttttgagcttgctcatgctcctctgtcaattgaaacttgtcagttgg 26926770  T
Q  438 cagggcagtatgattaagtt 457  Q
    || | ||||| |||||||||    
T  26926769 catgacagtaggattaagtt 26926750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 1321403 - 1321335
Alignment:
Q  389 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  1321403 tgttttgagcttgatcatgctcctctgtcaattgaaacttgtcagttggtagggcagtaggattaagtt 1321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 5282146 - 5282032
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaa---gatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||||||||||||  |||||| |||||||||||||||   | | ||||| | |  ||| |||||||||||||||||||||| || ||||||    
T  5282146 attccttcgtataagatgagtgtcacataaaggaatgcacctctaatgggttattttgaattagatcgtgctcctctgtcaattgaaactagtcagttgg 5282047  T
Q  438 cagggcagtatgatt 452  Q
    |||||||||| ||||    
T  5282046 cagggcagtaagatt 5282032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 5282256 - 5282189
Alignment:
Q  180 ttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactga 247  Q
    |||||||||||||| || ||| ||||||| |||||||||||||||||||||||| ||||| |||||||    
T  5282256 ttgttggaatttaaattaaatacttgttagtttgctgaagatgttggtattgaagtgtcttatactga 5282189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 428
Target Start/End: Complemental strand, 12309458 - 12309377
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaactt 428  Q
    |||||||| |||| |||  ||||||||||||||||||||||||   |||| ||| |||||||||||||||||||||||||||    
T  12309458 tataagataagtgtgacgaaagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctctgtcaattgaaactt 12309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 13304199 - 13304102
Alignment:
Q  216 gaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc 313  Q
    |||||||||||||||||||||||| ||||| |  |||||| |||   || ||||||||||| ||||||||||| | |||| ||||||||||| |||||    
T  13304199 gaagatgttggtattgaaatgtcttatacttagcgtaaaggtttggtagtctctttgaaaagtcaaaagaatgaagaaaagatattttgtattctacc 13304102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 23553598 - 23553723
Alignment:
Q  158 attattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagat 257  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||| ||  | |||| |||  |||||| |||| || ||||| ||||| ||  ||||  |    
T  23553598 attattatgtagtatttttattttgttggaatttaagtttaattcatggaagtttgttgagaatgttgatattaaagtgtcttatacttaagataaatgt 23553697  T
Q  258 ttacaagcctctttgaaaaatcaaaa 283  Q
    ||||||| ||||||||||| ||||||    
T  23553698 ttacaagtctctttgaaaactcaaaa 23553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 29656298 - 29656179
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||||||||||||||||| |||| |   |||||||  |||||||||||   |||  ||| |||| ||||| |||||||||||||||||| ||||||    
T  29656298 attccttcatataagatgagtgtgacaaacatgaatgcatttctaagatgttcttttgagcttgatcaagctcccctgtcaattgaaacttgtcagttgg 29656199  T
Q  438 cagggcagtatgattaagtt 457  Q
    ||||| | || |||||||||    
T  29656198 cagggaaataagattaagtt 29656179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 1321633 - 1321502
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||||| || ||||| |||||||||||||||| ||||||||||| || || |||||||||| |||| | ||| || ||| | ||||| | |||||||     
T  1321633 tattattatgttgtgtcgttattttgttggaatt-aagtttaattcatggtagtttgctgaaggtgtttgcattaaagtgttttatacttagtgtaaagg 1321535  T
Q  257 tttacaagcctctttgaaaaatcaaaagaatgg 289  Q
    |||  ||| ||||||||||| || |||||||||    
T  1321534 ttttgaagtctctttgaaaactcgaaagaatgg 1321502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 23553833 - 23553901
Alignment:
Q  389 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    |||||||| ||| ||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||    
T  23553833 tgttttgtgcttgatcatactcctctgtcaatagaaacttgtcagttggcagtgcaatatgattaagtt 23553901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 5282324 - 5282265
Alignment:
Q  94 tgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtag 153  Q
    ||||||| |||| ||||||||||||  |||||||||||||| ||||||||||||||||||    
T  5282324 tgagatcgcctgaagatattctcaacggtttgattctgccagaaaattatgtttaggtag 5282265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 7413823 - 7413782
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  7413823 tgctcctctgtcaattgaaacttgtcagttggcagggcagta 7413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 7067122 - 7067177
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||  ||||||||    
T  7067122 atcatgctcctctgtcaattgaaacttgtcagttggcagtgcaatagaattaagtt 7067177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 16886309 - 16886192
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagat---gttttgt-acttcatcatgctcctctgtcaattgaaacttgttagttg 436  Q
    |||||||  ||||||||||||| |||  || ||||||||||| ||||||   ||| ||| | || || |||||||||||||||||||||||||| |||||    
T  16886309 attcctttgtataagatgagtgtgacgaaacggaatgcacctttaagatcttgttatgtgaattgattatgctcctctgtcaattgaaacttgtcagttg 16886210  T
Q  437 gcagggcagtatgattaa 454  Q
    | ||| || |||||||||    
T  16886209 gtaggacaatatgattaa 16886192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 41935088 - 41935029
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaa 461  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  41935088 atcatgcttttctgtcaattgaaacttgtcagttggcagtgcagtagaattaagttaaaa 41935029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 3380553 - 3380507
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgtt 207  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||    
T  3380553 attaggtagtgtctttattttgttggaatttaaattaaattcttgtt 3380507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Original strand, 12083400 - 12083446
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  12083400 tgctcctctgtcaattgaaactagtcagttggcagggcagtaagatt 12083446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 41935155 - 41935111
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtttt 394  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||    
T  41935155 tataagatgagtgagatgtaagggaatgcacctctaagatgtttt 41935111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 11824976 - 11825022
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgtt 207  Q
    |||| ||||||||||| |||||||||||||||| || ||||||||||    
T  11824976 attaggtagtgtctttcttttgttggaatttaaattaaattcttgtt 11825022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 28067494 - 28067578
Alignment:
Q  371 gggaatgcacctctaagatgttt---tgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    |||||||||||||||||| ||||   || |||  ||| ||||| ||||||||||||| ||||| ||||||||| |||||| ||||    
T  28067494 gggaatgcacctctaagaggtttctttgaactagatcgtgctcatctgtcaattgaatcttgtcagttggcagtgcagtaagatt 28067578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 41935391 - 41935305
Alignment:
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaatt 201  Q
    ||||||||||| |||||| | || ||||||||||  |||| | ||||||| ||||| | |||||| |||||||||| || |||||||    
T  41935391 tcaagagtttggttctgctacaatattatgtttaaatagcgtcattattatgtagtttgtttattatgttggaattcaaatttaatt 41935305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 28066723 - 28066771
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    |||||||||||||||||||||| || |||||  ||||||||| ||||||    
T  28066723 tgctcctctgtcaattgaaactagtcagttgctagggcagtaagattaa 28066771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 31931646 - 31932021
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| |||||||||| ||||| | | | |||| ||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| |||| ||||||||    
T  31931646 gatgactgcgtgaggagcatgtcccc-atatatcatcaggaacacatgttcccgaggattgagatggaagttacgttgctgagatcgcctgaagatattc 31931744  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaag-tttaattcttgttattttg 213  Q
    | |||| ||||||||||||| |  |||||||||| || |||  ||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  31931745 tgaagaatttgattctgccacatgattatgtttatgtggcaccattattatgtagtgtctttattttgtcggaatttaagttttaattcttgttagtttg 31931844  T
Q  214 ctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc 313  Q
    | |||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |  ||| |||||    
T  31931845 cggaagatgttggtattgaagtgtcttatattgaatgtaaagatttgcaagcctctttgaaaagtcaaaagaatggataaaacatatgt--tattctacc 31931942  T
Q  314 tattggttgtacaaattttttcatcagattccttcatataagatgagtgggacataagggaatgcacctctaagatgtt 392  Q
    || |||||||| ||||| |||||||||||| |||| ||||||||||||| ||||||| | |||||||||||||||||||    
T  31931943 taatggttgtataaattctttcatcagatttcttcgtataagatgagtgagacataaagaaatgcacctctaagatgtt 31932021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 24075173 - 24075431
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| |||||||||| ||||||||| |||  ||||| |||||||||| ||||   ||||||| | |||| ||||||||||||||| | || ||||||||    
T  24075173 gatgactgcgtgaggagcatgttctccagacgttatcgggaacgcatgttcccagtgattgagtttgaagctacattgctgagatcgcttgaagatattc 24075272  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgc 214  Q
    |||| | ||||||| || || |||||||||||||||||| || ||||||            ||||||||| |||||||| |||||||||||||| |||||    
T  24075273 tcaacattttgattatgtcagaaaattatgtttaggtagaatcattatt------------tattttgtttgaatttaaatttaattcttgttagtttgc 24075360  T
Q  215 tgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    ||||||||||||||||||| ||||| |||||||||| |  ||||| |||||||||||||||| ||||||||    
T  24075361 tgaagatgttggtattgaagtgtcttatactgaatgcagtgatttgcaagcctctttgaaaagtcaaaaga 24075431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 90 - 285
Target Start/End: Complemental strand, 20759195 - 20759000
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||| ||| |||| |||||||||||| | ||||||||  ||| || |||||| |||||||| || ||||| |  |||||||||||||||||||||||    
T  20759195 ttgctgatatcgcctgaagatattctcaacaatttgattccaccagaagattatgattaggtagtatcattataatctagtgtctttattttgttggaat 20759096  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||  |||||  ||||||||||||||| ||||||||    
T  20759095 ttaagtttaattcttgttagtttgctgaaaatgttggtattgaagtgttttatactgaatgtagtgatttgaaagcctctttgaaaagtcaaaaga 20759000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 90 - 285
Target Start/End: Complemental strand, 20765586 - 20765391
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||| ||| |||| |||||||||||| | ||||||||  ||| || |||||| |||||||| || ||||| |  |||||||||||||||||||||||    
T  20765586 ttgctgatatcgcctgaagatattctcaacaatttgattccaccagaagattatgattaggtagtatcattataatctagtgtctttattttgttggaat 20765487  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||  |||||  ||||||||||||||| ||||||||    
T  20765486 ttaagtttaattcttgttagtttgctgaaaatgttggtattgaagtgttttatactgaatgtagtgatttgaaagcctctttgaaaagtcaaaaga 20765391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 25144625 - 25144871
Alignment:
Q  23 cgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagt 122  Q
    |||||||| ||||||||| || ||||||| |||||||||| |||||  ||||||| |||||| ||| ||||||||||| ||   ||||||||| || | |    
T  25144625 cgtgaggagcatgttctccagttattatcgggaacgcatgttcccggtgattgagttggaagctacgttgctgagatcgccgaaagatattcttaacaat 25144724  T
Q  123 ttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatg 222  Q
    ||||||| ||||| ||||||||||||||| |                ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25144725 ttgattcggccatgaaattatgtttaggttg----------------tgtctttattttgttggaatttaagtttaattcttgttagtttgctgaagatg 25144808  T
Q  223 ttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    ||||||||||| ||||| ||||||||||||  || || |||||||| ||||||| ||||||||    
T  25144809 ttggtattgaagtgtcttatactgaatgtagtgacttgcaagcctcattgaaaagtcaaaaga 25144871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 44100614 - 44100791
Alignment:
Q  66 ccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattac 165  Q
    |||||||| |||||||| | |||||||||||||||||||| |||||||||||||| |||||||| | || |  |  |||||||||||  ||||||||||     
T  44100614 ccgaggatcgagatggatgctacattgctgagatcacctgaagatattctcaagaatttgattcggtcagaggaagatgtttaggtattattattatta- 44100712  T
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatact 245  Q
     |  |||| || |||| || | |||| |||||||||||||||| |||| |||||||||||| |||||| ||||| |||||    
T  44100713 -ttatgtcattgttttttttggattttagtttaattcttgttagtttgttgaagatgttggcattgaattgtcttatact 44100791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 25144936 - 25145043
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    |||| ||||||||  ||| |||||||||||||||||||| |||   |||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25144936 tataggatgagtgtcacagaagggaatgcacctctaagaagttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 25145035  T
Q  447 atgattaa 454  Q
    | ||||||    
T  25145036 aagattaa 25145043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 12227293 - 12227174
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||||||||||||  ||| |||| ||||||  | |||||||||   |||| ||| |||||| |||| ||||||||||||||||| ||||||    
T  12227293 attccttcgtataagatgagtgtcacaaaaggaaatgcatttttaagatgttgttttgtgcttgatcatgttcctgtgtcaattgaaacttgtcagttgg 12227194  T
Q  438 cagggcagtatgattaagtt 457  Q
    ||||||| ||||||||||||    
T  12227193 cagggcactatgattaagtt 12227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 17292284 - 17292348
Alignment:
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtatt 230  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||    
T  17292284 gtagtgtctttattttgttggaatttaaattaaattcttgttagtttgctgaagatgatggtatt 17292348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 44100888 - 44101007
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||||||||||||  ||| |||| ||||||  | |||||||||   ||||  || ||||||||||||| ||||||||||||||| ||||||    
T  44100888 attccttcgtataagatgagtgtcacaaaaggaaatgcatttataagatgttgttttgtgtttgatcatgctcctctatcaattgaaacttgtcagttgg 44100987  T
Q  438 cagggcagtatgattaagtt 457  Q
    || || |||| |||||||||    
T  44100988 caaggtagtaagattaagtt 44101007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 24075680 - 24075740
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 462  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||| ||||    
T  24075680 atcatgctcctatgtcaattgaaacttgtcagttggcagagcagtaagattaagttcaaag 24075740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 3510398 - 3510304
Alignment:
Q  159 ttattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaa 254  Q
    |||||| |||||||| |||||||||||||||| ||||||||||| || || |||| |||||||||| | |||||| ||||| ||||| | ||||||    
T  3510398 ttattatgtagtgtcattattttgttggaatt-aagtttaattcatggtagtttgttgaagatgtttgcattgaagtgtcttatacttagtgtaaa 3510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 20758781 - 20758735
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||    
T  20758781 tgctcctctgtcaattgagacttgttagttggcagggtagtaagatt 20758735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 20765172 - 20765126
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 452  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||    
T  20765172 tgctcctctgtcaattgagacttgttagttggcagggtagtaagatt 20765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 20758912 - 20758859
Alignment:
Q  404 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||    
T  20758912 catgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagtt 20758859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Complemental strand, 20765303 - 20765250
Alignment:
Q  404 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||    
T  20765303 catgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagtt 20765250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 452
Target Start/End: Original strand, 24075487 - 24075601
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| |||| ||||||||  ||  |||||||||||| ||||||| |||   ||| | |  ||| ||||||||| ||||||||||||||| ||||||    
T  24075487 attccttcttatatgatgagtgtcacggaagggaatgcacatctaagaggttcctttgaattggatcgtgctcctctatcaattgaaacttgtcagttgg 24075586  T
Q  438 cagggcagtatgatt 452  Q
    |||| ||||| ||||    
T  24075587 caggacagtaagatt 24075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 23124252 - 23124303
Alignment:
Q  188 atttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtct 239  Q
    |||||| || |||||||||||  ||||||||||||||||||||||| |||||    
T  23124252 atttaaattaaattcttgttagattgctgaagatgttggtattgaagtgtct 23124303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 12227520 - 12227408
Alignment:
Q  109 atattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgtta 208  Q
    ||||| ||| |||||||||| ||| | |  ||||||||||||||  ||||||||   || |||||  ||||||| | || |||| |||||||||||||||    
T  12227520 atattttcatgagtttgattatgctagatgattatgtttaggtaatattattat---gttgtgtcaatattttgctcgatttta-gtttaattcttgtta 12227425  T
Q  209 ttttgctgaagatgttg 225  Q
     ||||||||||||||||    
T  12227424 atttgctgaagatgttg 12227408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 35049419 - 35049361
Alignment:
Q  389 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
    |||||||  ||| ||||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  35049419 tgttttgagcttgatcatgctcctatgtcaattgaaacatgtcagttggcagagcagta 35049361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 13866410 - 13866454
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgcca 134  Q
    |||||||||||| ||| |||||||||||| |||||||||| ||||    
T  13866410 ttgctgagatcaactgaagatattctcaacagtttgattccgcca 13866454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 66 - 447
Target Start/End: Original strand, 18332683 - 18333063
Alignment:
Q  66 ccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattac 165  Q
    ||||||||||||||||||| ||| ||| ||||||| |||| ||||||| | |||||||||||| ||||| |  |||||||||| ||||||| |||| ||     
T  18332683 ccgaggattgagatggaagctacgttgttgagatcgcctgaagatattatgaagagtttgattatgccacatgattatgtttatgtagcatcattactat 18332782  T
Q  166 gtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagc 265  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||| |||||||||||| |||||| ||| |    
T  18332783 gtagtgtctttattttgttggaatttaagtttaattcttattagtttgcggaagatgttgatattgaagtgtcttatactgaatgtatagatttgcaaac 18332882  T
Q  266 ctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattggttgtacaaattttttcatcagattccttcatataagatgagtggga 365  Q
    ||||||||||||| |||| |||||||||||||||| |||| | ||||||| ||||||||||| || || |||||||||||||| ||||||||||||||      
T  18332883 ctctttgaaaaataaaaaaaatggataaaacatatgttgttttctacctaatggttgtacaagttcttgcatcagattccttcgtataagatgagtgg-- 18332980  T
Q  366 cataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 447  Q
      || | ||||||||||||| ||   |||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  18332981 --tacgagaatgcacctctatgatgttgttttgtgcttgattatgctcctctgtcaattgaaacttgtcagttggcagggcagta 18333063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 28747094 - 28746849
Alignment:
Q  15 gatgaatgcgtgaggaacatgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattc 114  Q
    ||||| ||| |||||| ||||||||| ||||||||||||||| ||||| |||     ||||||||||||| ||| ||||||||||| |||| | ||||||    
T  28747094 gatgactgcttgaggagcatgttctccagatattatcaggaatgcatgttcctagtaattgagatggaagctacgttgctgagatcgcctgaaaatattc 28746995  T
Q  115 tcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaag-tttaattcttgttattttg 213  Q
    |||| ||||||||||||||| |||||||||||| |||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||||||| ||||    
T  28746994 tcaacagtttgattctgccagaaaattatgtttcggtagcatcattattatgtggtgtctttattttgttggattttaagttttaattcttgttagtttg 28746895  T
Q  214 ctgaagatgttggtattgaaatgtctcatactgaatgtaaagattt 259  Q
    |||||||||||||||||||| ||||  ||||| |  ||||||||||    
T  28746894 ctgaagatgttggtattgaagtgtcatatacttagggtaaagattt 28746849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 33 - 285
Target Start/End: Complemental strand, 28277005 - 28276764
Alignment:
Q  33 atgttctcgagatattatcaggaacgcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgc 132  Q
    |||||||| ||||| ||||||||||| ||| | ||||  ||||||||| ||| ||| ||||||||||| |||| |||||||||||| | ||| ||||| |    
T  28277005 atgttctctagatactatcaggaacgtatgtttccgataattgagatgaaagttacgttgctgagatctcctgaagatattctcaacaatttcattcttc 28276906  T
Q  133 cataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattga 232  Q
    |||||||||||||||| ||| ||  ||           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28276905 cataaaattatgtttaagtaacaacat-----------gtatttattttgttggaatttaagtttaattcttgttagtttgctgaagatgttggtattga 28276817  T
Q  233 aatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaaga 285  Q
    | ||||| ||||||||||||  ||||| |||||||||||| ||| ||||||||    
T  28276816 agtgtcttatactgaatgtagtgatttgcaagcctctttggaaagtcaaaaga 28276764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 18878655 - 18878848
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaat 189  Q
    ||||||||||| |||| |||||||||||| | |||||||| | || || |||||  ||||||||||| ||||||| ||| ||| | |||||||||| |||    
T  18878655 ttgctgagatcgcctgaagatattctcaacaatttgattccgacagaagattatcattaggtagcatcattattatgtactgtttgtattttgttgaaat 18878754  T
Q  190 ttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaa 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||  ||||| ||||||||||| |||| ||||||    
T  18878755 ttaagtttaattcttgttagtttgctgaagatgttggtattgaagtgtcttatactgaatgtagtgatttgcaagcctctttaaaaagtcaaaa 18878848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 93 - 288
Target Start/End: Original strand, 11718909 - 11719104
Alignment:
Q  93 ctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaattta 192  Q
    ||||||||| ||| |||||||||||| |||||||||||||  ||| |||||| ||||||| ||| ||||||| |||  || |||||||||||||||||||    
T  11718909 ctgagatcaactgaagatattctcaacagtttgattctgctgtaagattatgattaggtaccatcattattatgtacagtatttattttgttggaattta 11719008  T
Q  193 agtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||| ||||| |  |||||| ||| |||| || ||| |||| |||||||||||    
T  11719009 agtttaattcttgttagtttgctgaagatgttgggattgaagtgtcttatacttagggtaaaggtttgcaagtctgtttcaaaactcaaaagaatg 11719104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 58 - 282
Target Start/End: Original strand, 20988632 - 20988856
Alignment:
Q  58 gcatggtcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcatt 157  Q
    ||||| ||||||| |||| |||||||| ||  |||||||||||  ||| ||||||||||||||||| |||| |||||  ||||||||||||||||||||     
T  20988632 gcatgttcccgagtattgggatggaagttatgttgctgagatcgtctgaagatattctcaagagttcgattatgccactaaattatgtttaggtagcatc 20988731  T
Q  158 attattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagat 257  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||  || |  | |||||  ||||| ||||| |  ||| ||||    
T  20988732 attattatgtaatgtctttattttgttggaatttaagtttaattcttgttagtttgttgactatatccgcattgacgtgtcttatacttagggtatagat 20988831  T
Q  258 ttacaagcctctttgaaaaatcaaa 282  Q
    || ||||| |||||||||| |||||    
T  20988832 ttgcaagcttctttgaaaagtcaaa 20988856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 5306551 - 5306380
Alignment:
Q  64 tcccgaggattgagatggaagatacattgctgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattatt 163  Q
    |||||| ||| |||||||| | ||||||| ||||| | |||| |||||||||||||||||||| || |||| |  |  |||||||||||| ||||||||     
T  5306551 tcccgacgatcgagatggatgctacattgttgagacctcctgaagatattctcaagagtttgactcggccagacgaagatgtttaggtagtattattat- 5306453  T
Q  164 acgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtct 239  Q
      || ||||| ||||||| ||||| |||| ||||||||||||| | |||||||||||||||||||||||| |||||    
T  5306452 --gttgtgtcattattttattggatttta-gtttaattcttgtaagtttgctgaagatgttggtattgaagtgtct 5306380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 23282698 - 23282814
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcag 440  Q
    |||||||| |||| ||||||||  ||  |||||||||||| |||||||||||||||  || |||||||||| |||||||||||||||||| |||||||||    
T  23282698 attccttcgtataggatgagtgtcactaaagggaatgcacttctaagatgttttgtgattgatcatgctcccctgtcaattgaaacttgtcagttggcag 23282797  T
Q  441 ggcagtatgattaagtt 457  Q
    || |||| | |||||||    
T  23282798 ggtagtaaggttaagtt 23282814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 11719170 - 11719277
Alignment:
Q  353 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 449  Q
    |||||||||||||| ||| |||||||||||||||||||||   || | ||| |||||||| |||||||||||||||||||| ||||||||| ||||||      
T  11719170 aagatgagtgggacgtaaaggaatgcacctctaagatgttattttatgcttgatcatgcttctctgtcaattgaaacttgtcagttggcagtgcagtagt 11719269  T
Q  450 attaagtt 457  Q
    ||||||||    
T  11719270 attaagtt 11719277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 12763966 - 12764057
Alignment:
Q  369 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||||||||||||||||   ||||  || ||||||||||| ||||||||||||||||| |||||| || |||||| |||||||||    
T  12763966 aagggaatgcacctctaagatgttgttttgtgtttgatcatgctcctttgtcaattgaaacttgtcagttgggagagcagtaagattaagtt 12764057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 11679137 - 11679055
Alignment:
Q  96 agatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttat 178  Q
    |||||| ||| |||||||||||| |||||||||||||||||| |||||| |||| || ||| ||||||| ||| |||||||||    
T  11679137 agatcaactgaagatattctcaacagtttgattctgccataagattatgattagataccatcattattatgtactgtctttat 11679055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 5305394 - 5305342
Alignment:
Q  409 tcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaa 461  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  5305394 tcctctgtcaattgaaacttgtcagttggcaaggcagtaagattaagttaaaa 5305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 18879099 - 18879154
Alignment:
Q  402 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 457  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||    
T  18879099 atcatgctcctatgtcaattgaaacatgtcagttggcagggcagtaagattaagtt 18879154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 20529256 - 20529359
Alignment:
Q  210 tttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcc 309  Q
    |||| |||| ||||||| |||||| ||||| ||||| | |||||| ||||||||| ||||||||||| |||||| |||| | | |||| ||||||||| |    
T  20529256 tttgttgaaaatgttggcattgaagtgtcttatacttagtgtaaaaatttacaagtctctttgaaaactcaaaataatgtagagaacacattttgtattc 20529355  T
Q  310 tacc 313  Q
    ||||    
T  20529356 tacc 20529359  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 462
Target Start/End: Original strand, 18878906 - 18879030
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgta---cttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    ||||||||||||| ||||||||  ||  | |||||||||||| || || ||||| |    ||| ||| ||||||||||||||||||||||||| ||||||    
T  18878906 attccttcatatatgatgagtgtcacggatgggaatgcacctataggaggtttttttgagcttgatcgtgctcctctgtcaattgaaacttgtcagttgg 18879005  T
Q  438 cagggcagtatgattaagttaaaag 462  Q
    || ||| ||| ||||||||| ||||    
T  18879006 caaggccgtaagattaagttcaaag 18879030  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 18333252 - 18333112
Alignment:
Q  222 gttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattg-gt 320  Q
    ||||| |||||| ||||| ||||| | ||||||||| | ||   | ||||||||| ||||||||||||||| |||| || ||| || ||||||| || ||    
T  18333252 gttgggattgaagtgtcttatacttagtgtaaagatgtgcagcgccctttgaaaactcaaaagaatggatataacacatgttgcatgctacctaatgagt 18333153  T
Q  321 tgtacaaattttttcatcagattccttcatataagatgagt 361  Q
    |||| ||||| |  ||||| |||| ||||||||||||||||    
T  18333152 tgtataaattctcccatcaaattcattcatataagatgagt 18333112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 31991813 - 31991767
Alignment:
Q  161 attacgtagtgtctttattttgttggaatttaagtttaattcttgtt 207  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||    
T  31991813 attaggtagtgtctttattttgttggaatttaaattaaattcttgtt 31991767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 26617451 - 26617335
Alignment:
Q  166 gtagtgtctttattttgttggaatttaag-tttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaag 264  Q
    |||||||||||||||||||| |||||||| |||| ||||||||  |||||| |  ||||||| |||||| ||||| ||||| |  ||| |||||| | ||    
T  26617451 gtagtgtctttattttgttgcaatttaagttttatttcttgtttgtttgctaattatgttgggattgaagtgtcttatacttagggtagagatttgc-ag 26617353  T
Q  265 cctctttgaaaaatcaaa 282  Q
      ||||||||||||||||    
T  26617352 attctttgaaaaatcaaa 26617335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 28276699 - 28276589
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    |||| ||||||||  ||| |||||||||||||||||||| |||   |||  ||| |||||| |||||| ||||||||||||| | |||| |||| |||||    
T  28276699 tataggatgagtgtcacagaagggaatgcacctctaagaggttattttgagcttgatcatgatcctctctcaattgaaacttatcagttagcagcgcagt 28276600  T
Q  447 atgattaagtt 457  Q
    | |||| ||||    
T  28276599 acgatttagtt 28276589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 27650140 - 27650092
Alignment:
Q  406 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 454  Q
    |||| |||| |||||||||||||||||||||||| | ||||| ||||||    
T  27650140 tgctgctctatcaattgaaacttgttagttggcatgacagtaagattaa 27650092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 27650482 - 27650438
Alignment:
Q  90 ttgctgagatcacctggagatattctcaagagtttgattctgcca 134  Q
    |||||||||||| ||| |||||||||||| |||||||||| ||||    
T  27650482 ttgctgagatcaactgaagatattctcaacagtttgattccgcca 27650438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 5502 - 5696
Alignment:
Q  94 tgagatcacctggagatattctcaagagtttgattctgccataaaattatgtttaggtagcattattattacgtagtgtctttattttgttggaatttaa 193  Q
    ||||||| |||| |||||||||||| |||||||||  |||| || ||   | ||||||||||| ||||||| ||||||||||| | ||||  ||||||||    
T  5502 tgagatcgcctgaagatattctcaacagtttgatttcgccagaagatcgagattaggtagcatcattattatgtagtgtctttgtcttgtgcgaatttaa 5601  T
Q  194 gtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatg 288  Q
    |||||||| |||||| |||||| |||||||||| |||||| ||||  ||||| |  |||||| ||| |||| || |||||||| |||||||||||    
T  5602 gtttaattgttgttagtttgctaaagatgttggaattgaagtgtcgtatacttagggtaaaggtttgcaagtctgtttgaaaactcaaaagaatg 5696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 5759 - 5869
Alignment:
Q  350 tataagatgagtgggacataagggaatgcacctctaagatgtttt---gtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagt 446  Q
    ||||||||||||| |||  ||| |||||||||||||||||||| |   || ||| ||||||||||||||| |||||||||||||  |||||||| |||||    
T  5759 tataagatgagtgtgacgaaagagaatgcacctctaagatgttgtttcgtgcttgatcatgctcctctgtaaattgaaacttgtctgttggcagtgcagt 5858  T
Q  447 atgattaagtt 457  Q
    | |||||||||    
T  5859 aggattaagtt 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 22463 - 22344
Alignment:
Q  341 attccttcatataagatgagtgggacataagggaatgcacctctaagatgttttgt---acttcatcatgctcctctgtcaattgaaacttgttagttgg 437  Q
    |||||||| ||||||||||||| |||| | | |||||||| ||||||||||| | |   |||| ||||||||| ||||||||||||||||||| ||||||    
T  22463 attccttcgtataagatgagtgtgacaaacgagaatgcacttctaagatgttgttttaaacttgatcatgctcttctgtcaattgaaacttgtcagttgg 22364  T
Q  438 cagggcagtatgattaagtt 457  Q
     | |||||||||||||||||    
T  22363 gaaggcagtatgattaagtt 22344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 3210 - 3302
Alignment:
Q  270 ttgaaaaatcaaaagaatggataaaacatattttgtatcctacctattg-gttgtacaaattttttcatcagattccttcatataagatgagt 361  Q
    ||||||| ||||||||||||||| |||| || ||| || ||||||| || ||||||||||||||  ||||| ||| ||||| |||||||||||    
T  3210 ttgaaaactcaaaagaatggatataacacatgttgcattctacctaatgagttgtacaaattttcccatcaaatttcttcagataagatgagt 3302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 45911 - 46003
Alignment:
Q  220 atgttggtattgaaatgtctcatactgaatgtaaagatttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctac 312  Q
    ||||||| |||||| ||||| ||||| | |||||| ||||||||  ||||||||||| ||||||||||| | | |||| ||||||||| ||||    
T  45911 atgttggcattgaagtgtcttatacttagtgtaaaaatttacaaatctctttgaaaactcaaaagaatgaagagaacacattttgtattctac 46003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 2829 - 2895
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgtt 224  Q
    |||||||| ||  |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  2829 tattattatgttatgtcattattttgttggattttaa-tttaattcttgttagtttgctgaagatgtt 2895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 313
Target Start/End: Original strand, 1239 - 1388
Alignment:
Q  157 tattattacgtagtgtctttattttgttggaatttaagtttaattcttgttattttgctgaagatgttggtattgaaatgtctcatactgaatgtaaaga 256  Q
    |||||||| || ||||| ||||||||||||| |||| ||||||||||||||| |||| ||||| || | | |||||| ||||| ||||| || |          
T  1239 tattattatgttgtgtcattattttgttggatttta-gtttaattcttgttagtttgttgaagttgctagcattgaagtgtcttatacttaacg------ 1331  T
Q  257 tttacaagcctctttgaaaaatcaaaagaatggataaaacatattttgtatcctacc 313  Q
    ||| |||| |||||||| |||||||||||||| |   |||||| ||||||| |||||    
T  1332 tttgcaagtctctttgataaatcaaaagaatgaagggaacataatttgtattctacc 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 36894 - 36974
Alignment:
Q  166 gtagtgtctttattttgttggaatttaag-tttaattcttgttattttgctgaagatgttggtattgaaatgtctcatact 245  Q
    ||||||||| ||||| |||| |||||||| ||||||| |||||| ||||||||  ||||||| |||||| ||||| |||||    
T  36894 gtagtgtctatatttagttgcaatttaagttttaatttttgttagtttgctgactatgttgggattgaagtgtcttatact 36974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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