View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21397_low_1 (Length: 678)
Name: NF21397_low_1
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_1 |
 | |
|
| [»] scaffold0182 (3 HSPs) |
| | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 5885645 - 5884994
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885645 |
atgatcctctttctaacttttattcttgatcattctactactttgcttatgtgtcact---tcaagccattatacataataattttgataaaaagagtta |
5885549 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885548 |
cactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata |
5885449 |
T |
|
| Q |
218 |
atatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5885448 |
atatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccct |
5885349 |
T |
|
| Q |
318 |
ttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885348 |
ttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttt |
5885249 |
T |
|
| Q |
418 |
tccaccatgtctactatttatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgtttttt |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885248 |
tccaccatgtctactattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgtttttt |
5885149 |
T |
|
| Q |
518 |
actatcatgtcattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885148 |
actatcatgtcattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttag |
5885049 |
T |
|
| Q |
618 |
ttcatcttcaatattgtattactgttttttccacccattttaactcttcatctct |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5885048 |
ttcatcttcaatattgtattactgttttttccactcattttaactcttcatctct |
5884994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 146 - 559
Target Start/End: Complemental strand, 54946528 - 54946124
Alignment:
| Q |
146 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
54946528 |
agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt |
54946430 |
T |
|
| Q |
246 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccctttcacctatatgataaccaacgcaaatc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54946429 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
54946330 |
T |
|
| Q |
346 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactatttatgtcaata |
445 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54946329 |
tcattccttttatg--------gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaata |
54946238 |
T |
|
| Q |
446 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54946237 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgt |
54946138 |
T |
|
| Q |
546 |
gtataaatatgtga |
559 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54946137 |
gtataaatatgtga |
54946124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 54946736 - 54946605
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54946736 |
atgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaagagtta |
54946637 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
54946636 |
tactaatcaattgcaatcttaataagaaagaa |
54946605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 148 - 672
Target Start/End: Original strand, 43942417 - 43942943
Alignment:
| Q |
148 |
aacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata--atatttacaccatctccattgaatttgt |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43942417 |
aacttttacatccttcattcttataactccttcaactactattttttaaaaacattgattatttgttatataatatttacaccatcaccattgaatttgt |
43942516 |
T |
|
| Q |
246 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccctttcacctatatgataaccaacgcaaatc |
345 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43942517 |
ctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctacatgataaccaacgcaaatc |
43942616 |
T |
|
| Q |
346 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactatttatgtcaata |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43942617 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaata |
43942716 |
T |
|
| Q |
446 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942717 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgt |
43942816 |
T |
|
| Q |
546 |
gtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtttt |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43942817 |
gtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtttt |
43942916 |
T |
|
| Q |
646 |
ttccacccattttaactcttcatctct |
672 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
43942917 |
ttccactcattttaactcttcatctct |
43942943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 214 - 518
Target Start/End: Complemental strand, 2501361 - 2501056
Alignment:
| Q |
214 |
tataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttcccttttt |
313 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
2501361 |
tataatatttacaccatcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttccttttt |
2501262 |
T |
|
| Q |
314 |
ccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttga |
413 |
Q |
| |
|
||||||||||||||| |||| || | | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| | |
|
|
| T |
2501261 |
ccctttcacctatataataatca-cactaatctcattccttttctgctcattctgtaacatttcatgatcaattttatcatttacctcattctctcttca |
2501163 |
T |
|
| Q |
414 |
cttttccaccatgtctactatttatgtcaataacaccaaac--catctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatg |
511 |
Q |
| |
|
||||||| ||||||||||| | | |||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2501162 |
tttttccatcatgtctactacagaggacaataacaccgaaccacatctttctacatttttcctcaaccatgctatccaaatgttctaatcttatttcatg |
2501063 |
T |
|
| Q |
512 |
tttttta |
518 |
Q |
| |
|
||||||| |
|
|
| T |
2501062 |
tttttta |
2501056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 43942177 - 43942310
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43942177 |
atgatcccctttctaatttttattcttgatcattcttctactctgcttatgtgtcactccctcaaaccattatacataataattttgataaaaagagtta |
43942276 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaact |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
43942277 |
cactaatcaattgcaaccttaataagaaagaact |
43942310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 2501804 - 2501722
Alignment:
| Q |
46 |
atcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgc |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2501804 |
atcattcttctactttgcttatgtgtcactccctcaaaccattataca---taattttgataaaaagagttacactaatctattgc |
2501722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 639
Target Start/End: Original strand, 22073958 - 22074043
Alignment:
| Q |
554 |
atgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattac |
639 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||| ||| ||||| |
|
|
| T |
22073958 |
atgtaattttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaattac |
22074043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 146 - 672
Target Start/End: Original strand, 16856177 - 16856717
Alignment:
| Q |
146 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16856177 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcgccattgaatttgt |
16856276 |
T |
|
| Q |
246 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccctttcacctatatgataaccaacgcaaatc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856277 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttctctttttccctttcacctatatgataaccaacgcaaatc |
16856376 |
T |
|
| Q |
346 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactatttatgtcaata |
445 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16856377 |
tcattccttttctgctcattctgtagtatttgttgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaata |
16856476 |
T |
|
| Q |
446 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgt |
545 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16856477 |
acaccaaaccaactttctacacttttcctctaccatgctatctaaatgttctaatctcatatcatgttttttactatcacatcattgagaaacattgtgt |
16856576 |
T |
|
| Q |
546 |
gtataaatatgtgattttgt--------------gcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatat |
631 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16856577 |
gtataaatatgtgattttgtgcaccaaattttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatat |
16856676 |
T |
|
| Q |
632 |
tgtattactgttttttccacccattttaactcttcatctct |
672 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
16856677 |
tgtattacttttttttccactcattttaactcttcatctct |
16856717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 16855970 - 16856101
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16855970 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaagagtta |
16856069 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16856070 |
cactaatcaattgcaatcttaataagaaagaa |
16856101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 559 - 672
Target Start/End: Complemental strand, 26616004 - 26615891
Alignment:
| Q |
559 |
attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt |
658 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||| ||| |||||| |
|
|
| T |
26616004 |
attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt |
26615905 |
T |
|
| Q |
659 |
aactcttcatctct |
672 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26615904 |
aactcttcatctct |
26615891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 559 - 672
Target Start/End: Complemental strand, 26721932 - 26721819
Alignment:
| Q |
559 |
attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttttccacccatttt |
658 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||| ||| |||||| |
|
|
| T |
26721932 |
attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcatttt |
26721833 |
T |
|
| Q |
659 |
aactcttcatctct |
672 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26721832 |
aactcttcatctct |
26721819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 146 - 559
Target Start/End: Complemental strand, 47933726 - 47933322
Alignment:
| Q |
146 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
47933726 |
agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt |
47933628 |
T |
|
| Q |
246 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccctttcacctatatgataaccaacgcaaatc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47933627 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc |
47933528 |
T |
|
| Q |
346 |
tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactatttatgtcaata |
445 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47933527 |
tcattccttttatg--------gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaata |
47933436 |
T |
|
| Q |
446 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttttactatcatgtcattgagaaacattgtgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47933435 |
acaccaaaccatctttctacacttttcctctaccatgctatctaaatgttataatcttatatcatgttttttactatcgtgtcattgagaaacattgtgt |
47933336 |
T |
|
| Q |
546 |
gtataaatatgtga |
559 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47933335 |
gtataaatatgtga |
47933322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 47933934 - 47933803
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47933934 |
atgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccattatacataataattttgataaaaagagtta |
47933835 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47933834 |
tactaatcaattgcaatcttaataagaaagaa |
47933803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 417 - 672
Target Start/End: Complemental strand, 10995 - 10740
Alignment:
| Q |
417 |
ttccaccatgtctactatttatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttt |
516 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995 |
ttccaccatgtctactattgatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatctaaatgttctaatcttatatcatgttttt |
10896 |
T |
|
| Q |
517 |
tactatcatgtcattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggtta |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10895 |
tactatcatgtcattgagaaacattgtgtatataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggtta |
10796 |
T |
|
| Q |
617 |
gttcatcttcaatattgtattactgttttttccacccattttaactcttcatctct |
672 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
10795 |
gttcatcttcaatattgtcttactgttttttccactcattttaacttttcatctct |
10740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 146 - 457
Target Start/End: Complemental strand, 11317 - 10995
Alignment:
| Q |
146 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11317 |
agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcaccattgaatttgt |
11218 |
T |
|
| Q |
246 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcattcatatttccctttttccctttcacctatatgataaccaacgcaaat- |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
11217 |
ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataacaaatattcctt |
11118 |
T |
|
| Q |
345 |
-----------ctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctacta |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11117 |
ttccttttctgctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttctt-acttttccaccatgtctacta |
11019 |
T |
|
| Q |
434 |
tttatgtcaataacaccaaaccat |
457 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
11018 |
ttgatgtcaataacaccaaaccat |
10995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 11529 - 11399
Alignment:
| Q |
26 |
ctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgata------aaaagagttaca |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
11529 |
ctttttaacttttattcttgatcattcttctactttgcttatgtgtcacttcctcaatccattatacatcatagttttgataaaaataaaaagagttaca |
11430 |
T |
|
| Q |
120 |
ctaatcaattgcaatcttaataagaaagaac |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11429 |
ataatcaattgcaatcttaataagaaagaac |
11399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 7414 - 7610
Alignment:
| Q |
18 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataataattttgataaaaagagtta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7414 |
atgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccattatacataatacttttgataaaaagagtta |
7513 |
T |
|
| Q |
118 |
cactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7514 |
cactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt |
7610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 311 - 487
Target Start/End: Complemental strand, 26231004 - 26230828
Alignment:
| Q |
311 |
tttccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttct |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||| | ||| |
|
|
| T |
26231004 |
tttccctttcacctatataataaccaacactaatctcattccttttatgatcattctgtaatatttgatgatgaagtttatcatttacctcattctctct |
26230905 |
T |
|
| Q |
411 |
tgacttttccaccatgtctactatttatgtcaataacaccaaaccatctttctacacttttcctctaccatgctatc |
487 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
26230904 |
tgacttttccactatgtctactgttgatgtcaataacaccaaaccatgtttctacacttttcgtctatcatgctatc |
26230828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 646
Target Start/End: Complemental strand, 653423 - 653324
Alignment:
| Q |
547 |
tataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgttttt |
646 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||| | | ||||||| || |||||||| ||||||| |
|
|
| T |
653423 |
tataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaataattggatggaacatcttcgattttgtattattgttttt |
653324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 26231132 - 26231055
Alignment:
| Q |
214 |
tataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacatttta |
291 |
Q |
| |
|
|||| ||||||||||||| ||||| || ||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26231132 |
tatattatttacaccatcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacatttta |
26231055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 528 - 640
Target Start/End: Complemental strand, 40072225 - 40072113
Alignment:
| Q |
528 |
cattgagaaacattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttca |
627 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||| | ||||||||||||||||||||| ||| | | ||||||||| |||||| || |||||||||| |
|
|
| T |
40072225 |
cattgaaaaagattgtgtgtataagtatgtagtttctttcaccaaattttgggttttgttgttcatccctttcaagcaataattggataattcatcttca |
40072126 |
T |
|
| Q |
628 |
atattgtattact |
640 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
40072125 |
attttgtattact |
40072113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 538 - 648
Target Start/End: Complemental strand, 51167531 - 51167421
Alignment:
| Q |
538 |
cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt |
637 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||||||| |||||||||||||||| | |||||||| |||| | |||| |||||||| || |||| |
|
|
| T |
51167531 |
cattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattgaattgttcctcttcaattttctatt |
51167432 |
T |
|
| Q |
638 |
actgttttttc |
648 |
Q |
| |
|
| ||||||||| |
|
|
| T |
51167431 |
attgttttttc |
51167421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 646
Target Start/End: Complemental strand, 27280953 - 27280853
Alignment:
| Q |
539 |
attgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatta |
638 |
Q |
| |
|
|||||| ||||||||||||||||||||| || || ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| || |||| |
|
|
| T |
27280953 |
attgtgcgtataaatatgtgattttgtgtac-------tgagttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattg |
27280861 |
T |
|
| Q |
639 |
ctgttttt |
646 |
Q |
| |
|
||||||| |
|
|
| T |
27280860 |
atgttttt |
27280853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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