View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_low_10 (Length: 444)

Name: NF21397_low_10
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_low_10
NF21397_low_10
[»] chr6 (3 HSPs)
chr6 (280-430)||(22857051-22857201)
chr6 (21-124)||(22856835-22856938)
chr6 (184-223)||(22857011-22857050)
[»] chr7 (3 HSPs)
chr7 (30-124)||(43015180-43015275)
chr7 (184-250)||(43015347-43015413)
chr7 (272-329)||(10255966-10256023)
[»] chr2 (4 HSPs)
chr2 (30-124)||(38959225-38959320)
chr2 (27-124)||(8873017-8873116)
chr2 (184-264)||(8873185-8873265)
chr2 (184-234)||(38959117-38959167)
[»] chr3 (2 HSPs)
chr3 (27-124)||(39902201-39902300)
chr3 (184-264)||(39902053-39902133)
[»] chr5 (1 HSPs)
chr5 (272-329)||(27391549-27391606)
[»] chr8 (1 HSPs)
chr8 (334-416)||(26778380-26778468)
[»] chr4 (1 HSPs)
chr4 (353-416)||(53600885-53600949)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 280 - 430
Target Start/End: Original strand, 22857051 - 22857201
Alignment:
Q  280 tcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaacaacaataatggtgatttgtattttgtgttgttgtgagaaaaaagggggt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  22857051 tcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaacagtaataatagtgatttgtattttgtgttgttgtgagaaaaaagggggt 22857150  T
Q  380 gcactagtaaaaatgcaaacaatattaaaaaactaagctctgaggattttt 430  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22857151 gcactagtaaaaatgcaaacaatattaaaaaactaagctcagaggattttt 22857201  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 22856835 - 22856938
Alignment:
Q  21 gagatcatgccaggaaaccaattacatgaaaatagctcttcaagtgtagaatggatttaaaaattcagttaaatgtttaaagaaatttccagaatcagaa 120  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22856835 gagatcatgccaggaaaccaattatatgaaaatagttctttaagtgtagaatggatttaaaaattcagttaaatgtttaaagaaatttccagaatcagaa 22856934  T
Q  121 taag 124  Q
    ||||    
T  22856935 taag 22856938  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 22857011 - 22857050
Alignment:
Q  184 cacaatgatgtttaattttcttcaattgatgaagttggaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22857011 cacaatgatgtttaattttcttcaattgatgaagttggaa 22857050  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 43015180 - 43015275
Alignment:
Q  30 ccaggaaaccaattacatgaaaatagctcttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 124  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||||||    
T  43015180 ccaggaaaccaattatatgaaaatagttcttcaagagtagaatgtatttaaaaattcaattgaaatgtttaatgaaatttccagaatcaaaataag 43015275  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 43015347 - 43015413
Alignment:
Q  184 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgtttt 250  Q
    ||||||| ||||||||||||||| ||| || | |||||||||||||||||| |  ||||||||||||    
T  43015347 cacaatggtgtttaattttcttcgattaataacgttggaagatgatgaaaaagtggtttgttgtttt 43015413  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 10255966 - 10256023
Alignment:
Q  272 ttaatggttcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaa 329  Q
    ||||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||||    
T  10255966 ttaatggttcagaagcaagacattgaaaatactttcagaagcaaagacataagatgaa 10256023  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 38959320 - 38959225
Alignment:
Q  30 ccaggaaaccaattacatgaaaatagctcttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 124  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||||||    
T  38959320 ccaggaaaccaattatatgaaaatagttcttcaagagtagaatgtatttaaaaattcaattgaaatgtttaatgaaatttccagaatcaaaataag 38959225  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 8873017 - 8873116
Alignment:
Q  27 atgccaggaaaccaattacatgaaaatagctc-ttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 124  Q
    |||||||||||||| ||| |||||||||| || |||||| |||||||| ||||||||||||| || |||||||||||||||| |||| |||| |||||||    
T  8873017 atgccaggaaaccatttatatgaaaatagttccttcaagagtagaatgaatttaaaaattcaattgaaatgtttaaagaaatgtccataatcggaataag 8873116  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 8873185 - 8873265
Alignment:
Q  184 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgttttgacacaaagttgga 264  Q
    ||||||||| |||||||||||||||||||| | |||| ||||| ||||||| || ||||| ||||||| || |||| ||||    
T  8873185 cacaatgatctttaattttcttcaattgataatgttgtaagataatgaaaaagcggtttggtgttttggcaaaaagctgga 8873265  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 38959167 - 38959117
Alignment:
Q  184 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaa 234  Q
    ||||||||||||||||||||||| ||| || |  |||||||||||||||||    
T  38959167 cacaatgatgtttaattttcttcgattaataacattggaagatgatgaaaa 38959117  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 39902300 - 39902201
Alignment:
Q  27 atgccaggaaaccaattacatgaaaatagctc-ttcaagtgtagaatggatttaaaaattcagtt-aaatgtttaaagaaatttccagaatcagaataag 124  Q
    |||||||||||||| ||| |||||||||| || |||||| |||||||| ||||||||||||| || |||||||||||||||| ||||||||| |||||||    
T  39902300 atgccaggaaaccatttatatgaaaatagttccttcaagagtagaatgaatttaaaaattcaattgaaatgtttaaagaaatgtccagaatcggaataag 39902201  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 39902133 - 39902053
Alignment:
Q  184 cacaatgatgtttaattttcttcaattgatgaagttggaagatgatgaaaacgcagtttgttgttttgacacaaagttgga 264  Q
    ||||||||| |||||||||||||||||||| | |||||||||| ||||||| || ||||| ||||||| || |||| ||||    
T  39902133 cacaatgatctttaattttcttcaattgataatgttggaagataatgaaaaagcggtttggtgttttggcaaaaagctgga 39902053  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 27391549 - 27391606
Alignment:
Q  272 ttaatggttcagatgcaagctattaaaaatactctcagaagcaaagacataggatgaa 329  Q
    ||||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||||    
T  27391549 ttaatggttcagaagcaagacattgaaaatactttcagaagcaaagacataagatgaa 27391606  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 26778380 - 26778468
Alignment:
Q  334 aataatggtgatttgtattttgtgttgt-----tgtgagaaaaaaggg-ggtgcactagtaaaaatgcaaacaatattaaaaaactaag 416  Q
    |||||||||||| | |||||||||||||     |||||| |||| | | ||||||||||||||| | ||||||||||||||||||||||    
T  26778380 aataatggtgatgtatattttgtgttgtgctcttgtgaggaaaaggtgaggtgcactagtaaaattacaaacaatattaaaaaactaag 26778468  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 53600885 - 53600949
Alignment:
Q  353 ttgtgttgttgtgagaaaaaaggg-ggtgcactagtaaaaatgcaaacaatattaaaaaactaag 416  Q
    ||||| ||||||||| |||| | | ||||||||||||||| | ||||||||||||||||||||||    
T  53600885 ttgtgctgttgtgaggaaaaggtgaggtgcactagtaaaattacaaacaatattaaaaaactaag 53600949  T

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