View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_15 (Length: 409)
Name: NF21397_low_15
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_15 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 8041032 - 8040654
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttccatctatttgaaagaga |
118 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8041032 |
gcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttccatctatttgaaagaga |
8040933 |
T |
|
| Q |
119 |
acaataaattataagagttatcaaataggtataactaaatatgtactttaaaataaaaagaaattgaggaaagagtcacataatatatgcatttaaaata |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8040932 |
acaataaattaaaagagttatcaaataggtataactaaatatgtactttaaaataaaaagaaattgaggaaagagtcacataatatatgcatttaaaata |
8040833 |
T |
|
| Q |
219 |
taaataatttttgttttcaagtagaagataaaagacacctaactagttaaacctttcaccccattagaaaacctattcttagaaagtcacttattatagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8040832 |
taaataatttttgttttcaagtagaagataaaagacacctaactagttaaacctttcaccccattagaaaacctattcttagaaagtcacttattatagc |
8040733 |
T |
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| Q |
319 |
aatatcctcgtagtagttatattagaataatattctcatagtctatctagaatttaaattgtaaatgaaataaacccta |
397 |
Q |
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| T |
8040732 |
aatatcctcgtagtagttatattagaataatattctcatagtctatctagaatttaaattgtaaatgaaataaacccta |
8040654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 7973009 - 7973094
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttccat |
104 |
Q |
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| T |
7973009 |
gcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttggaagttgaacttccttttgtttctccat |
7973094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 8031664 - 8031581
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttcc |
102 |
Q |
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| T |
8031664 |
gcagtgacattgtggaaagaagaataccaccattttgcattcctttcagaactaactggaagccagtcttcaatttgtttttcc |
8031581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 7980054 - 7980098
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattcctt |
63 |
Q |
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| T |
7980054 |
gcagtgacattgtgaaaagctgagtaccaccattttgcattcctt |
7980098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 41383230 - 41383282
Alignment:
| Q |
308 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
360 |
Q |
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| T |
41383230 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
41383282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 41383035 - 41383121
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttccatc |
105 |
Q |
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| T |
41383035 |
gcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcggtcttcactttgtttttccatc |
41383121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 4002 - 4046
Alignment:
| Q |
19 |
gcagtcacattgtggaaagtagagtaccaccattttgcattcctt |
63 |
Q |
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| T |
4002 |
gcagtgacattgtggaaagaagaataccaccattttgcattcctt |
4046 |
T |
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