View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_2 (Length: 629)
Name: NF21397_low_2
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 610
Target Start/End: Original strand, 14973666 - 14974275
Alignment:
| Q |
1 |
tggaatgaagatgttcaatcaaacaatatcaacatcgaaaattgagctagctcttattgacggtacacaaataagctttatctagatggcttacttcgtg |
100 |
Q |
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| T |
14973666 |
tggaatgaagatgttcaatcaaacaatatcaacatcgaaaattgagctagctcttattgacggtacacaaataagctttatcaagatggcttactttgtg |
14973765 |
T |
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| Q |
101 |
tttgaaacattgcacttagcacgaatttcaccttgattacccgtcaacacactcaattgactcatcttagtaatagcaacggaaaacttctcaaaaaaca |
200 |
Q |
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| T |
14973766 |
tttacaacattgcacttagcgcgaatttcaccttgattacccgtcaacacactcaattgactcatcttagtaatagcaacggaaaacttctcaaaaaaca |
14973865 |
T |
|
| Q |
201 |
gcttctgattattggcaaatgaagtgactaatccctttgttctcttatcattgaacaagtcttggtcagaagtgaacaaaccacgactattcattaattc |
300 |
Q |
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| T |
14973866 |
gcttctgattattggcaaatgaagtgactaatccctttgttctcttatcattgaacaagtcttggtcagaagtgaacaaaccacgactattcattaattc |
14973965 |
T |
|
| Q |
301 |
aaggtagtatttgttatcaaacaatgttggtgttctcaaatccaagtttgctgtattttttgatcttgcatttggacatgtagttttgaggcttttggct |
400 |
Q |
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| T |
14973966 |
aaggtagtatttgttatcaaaaaatgttggtgttctcaaatccaagtttgctgtattgtctgagcttgcatttggacatctagttttgaggcttttggct |
14974065 |
T |
|
| Q |
401 |
aaggatttttccattgtagggtcctttgtagagagcctattggagaatgcgctacagtgtgcacgaccaaatgtgtgtgcacctgataaggcaacaacat |
500 |
Q |
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| T |
14974066 |
aaggatttttccattgtagggtcctttgaagagagcctcttggagaatgtgctacagtgtgcacgaccaaatgtgtgtgcacctgataaggcaacaacat |
14974165 |
T |
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| Q |
501 |
ctgtgacatcaaagttttgttctgcaaatgttttgattgtttcattggttttcttaaagggagacggaatttttgatgttgcttttgtgttgaatgttag |
600 |
Q |
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| T |
14974166 |
ctgtgacatcaaagttttgttctgcaaatgttttgattgtttcattggttttcttaaagggagatggaatttttgatgttgcttttgtgttgaatgttag |
14974265 |
T |
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| Q |
601 |
actatctctt |
610 |
Q |
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| T |
14974266 |
actatctctt |
14974275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 14946364 - 14946482
Alignment:
| Q |
410 |
tccattgtagggtcctttgtagagagcctattggagaatgcgctacagtgtgcacgaccaaatgtgtgtgcacctgataaggcaacaacatctgtgacat |
509 |
Q |
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| T |
14946364 |
tccaatgtagggtccgctggagagagtctattgaagaatgttccacaatgtgcacgaccaaatgtgtgtgcacctgataatgcaacaacatctgtgacat |
14946463 |
T |
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| Q |
510 |
caaagttttgttctgcaaa |
528 |
Q |
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| T |
14946464 |
caaagttttgggctgcaaa |
14946482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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