View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21397_low_20 (Length: 343)
Name: NF21397_low_20
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 401800 - 401459
Alignment:
| Q |
1 |
ggctgttgtgctggaatgggagagggctgtgatgtcctatattcagtttcatatctgtgacaactgatgtttattatctgcttctgcaacacaatgcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401800 |
ggctgttgtgctggaatgggagagggctgtgatgtcctatattcagtttcatatctgtgacaactgatgtttattatctgcttctgcaacacaatgctta |
401701 |
T |
|
| Q |
101 |
tctctgtaattaaacatttaacaaatttgggcttttaattcccttcctctgactttgtgatgctttttggcaggtttggcaggcacttttggctgttaga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401700 |
tctgtgtaattaaacatttaacaaatttgggcttttaattcccttcctctgactttgtgatgctttttggcaggtttggcaggcacttttggctgttaga |
401601 |
T |
|
| Q |
201 |
acacttgtgctgccaccagctgaagacattgaaacatggctcaattttgcttctctttgcagaaaaagtgggcgcattagccaagcaagatctactttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401600 |
acacttgtgctgccaccagctgaagacattgaaacatggctcaattttgcttctctttgcagaaaaagtgggcgcattagccaagcaagatctactttag |
401501 |
T |
|
| Q |
301 |
ttaaacttctacaggtttgaactgtgcacctggtctatgatg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
401500 |
ttaaacttctacaggtttgaactgtgcacctggtctatgatg |
401459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University