View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_21 (Length: 318)
Name: NF21397_low_21
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 23504206 - 23503954
Alignment:
| Q |
3 |
atactacttgacacaaaatgaacataaaatcacagcaaagcagagaggacaacaaaccaagcaaaccaagagggaaaagaaggtatatccaaaacttgca |
102 |
Q |
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| T |
23504206 |
atactacttgacacaaaatgaacataaaatcacagcaaagcagagaggacaacaaaccaagcaaaccaagagggaaaagaaggtatatccaaaacttgca |
23504107 |
T |
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| Q |
103 |
aagaagatccatatgaggctgacactaatgattaagtttgatgtttcaatcataaataagccaaactgccacaagaaaaattcctaattgtccttcctaa |
202 |
Q |
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| T |
23504106 |
aagaagatccatatgagactgacactattgattaagtttgatgtttcaatcataaataagccaaactgccacaagaaaaattcctaattgtccttcctaa |
23504007 |
T |
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| Q |
203 |
caccaggtgtgccaaggaagaacataagagtcaataaaatatttacaggacag |
255 |
Q |
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| T |
23504006 |
caccaggtgtgccaaggaagaacataagagtcaataaaatatttacaggacag |
23503954 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 9485068 - 9485010
Alignment:
| Q |
191 |
tgtccttcctaacaccaggtgtgccaaggaagaacataagagtcaataaaatatttaca |
249 |
Q |
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| T |
9485068 |
tgtccttcctagcacaaggtgtgccaaggaagaacataagagtcaaaacaatatgtaca |
9485010 |
T |
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