View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_26 (Length: 288)
Name: NF21397_low_26
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 25330242 - 25330510
Alignment:
| Q |
19 |
aaatggaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaaaaacnnnnnnncgtagaaactaaatta |
118 |
Q |
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| T |
25330242 |
aaatgaaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaaaaactttttttcgtagaaactaaatta |
25330341 |
T |
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| Q |
119 |
atccatctaaattgaaaccagagagaaccacaaactcaaaaactacttgatacataataagaaactaagaagattgaa-----------ttgtgactctt |
207 |
Q |
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| T |
25330342 |
gtccacctaaattgaaaccagagagaaccacaaactcaaaaactacgtgatacataataagaaactaagaagattgaatctttttttttttgtgactctt |
25330441 |
T |
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| Q |
208 |
caacttatggcttctattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
276 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25330442 |
caacttatggctactattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
25330510 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 13215199 - 13215159
Alignment:
| Q |
105 |
tagaaactaaattaatccatctaaattgaaaccagagagaa |
145 |
Q |
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| T |
13215199 |
tagaaactaaattagtccatctaaattgaagccagggagaa |
13215159 |
T |
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