View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_28 (Length: 279)
Name: NF21397_low_28
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 33749449 - 33749377
Alignment:
| Q |
194 |
tgtaaacgaaatggacgaagtagatctataacaacacaagaaagaatcaaaccatttattattttgttttttc |
266 |
Q |
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| T |
33749449 |
tgtaaacgaaatggacgaagtagatctataacaacacaagaaagaatcaagccatttcttattttgttttttc |
33749377 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 33749635 - 33749567
Alignment:
| Q |
81 |
cactctctcacatattggaccacgtggccaacaactc--tctcacacatggataaccggttgaataggt |
147 |
Q |
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| T |
33749635 |
cactctctcacatattggaccacgtggccaacaactctctctcacacatgggtaattggttgaataggt |
33749567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 33748830 - 33748876
Alignment:
| Q |
62 |
ttttgcactctccattatacactctctcacatattggaccacgtggc |
108 |
Q |
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| T |
33748830 |
ttttacactctctattagacactctctcacatattggaccacgtggc |
33748876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 538211 - 538133
Alignment:
| Q |
49 |
taaggacaatcatttttgcactctccattatacactctctcacatattggaccacgtggccaacaactctctcacacat |
127 |
Q |
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|||||||| ||| |||| |||||||||||| ||||||||||||||| || ||| |||||| ||||| ||||| ||||| |
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| T |
538211 |
taaggacagtcacttttacactctccattagacactctctcacatacagggccatgtggcccacaacactctctcacat |
538133 |
T |
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