View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_3 (Length: 576)
Name: NF21397_low_3
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 123 - 560
Target Start/End: Original strand, 16470045 - 16470482
Alignment:
| Q |
123 |
gtacatttggtatagtttttcctaatcaattaactaatttaatatttaatgagcatgcaccgttagtgtaaaacaacatctagctagtaagagacatcca |
222 |
Q |
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| T |
16470045 |
gtacatttggtatagtttttcctaattaattaactaatttaatatttaatgagcatgcaccgttagtgtaaaacaacatctagctagtgagagacatcca |
16470144 |
T |
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| Q |
223 |
tttttccatgtcacattattattttcaaaacaatcatacaaaaatggactgatatggcaaagtatttgtctctcattggatgtattttacagtatataat |
322 |
Q |
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| T |
16470145 |
tttttccatgtcacattattattttcaaaacaatcatacaaaaatggactgatatggcaaagtatttgtctctcattggatgtattttacagtatataat |
16470244 |
T |
|
| Q |
323 |
ttaattccttaatttaaaatgagagtacataaaataccttgaggccttaaacctcgcataagaaacttcaaccaattcaaactttatgtactgggataac |
422 |
Q |
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| T |
16470245 |
ttaattccttaatttaaaatgagagtacataaaataccttgaggccttaaacctcgcataagaaacttcaaccaattcaaactttatgtactgggataac |
16470344 |
T |
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| Q |
423 |
cctatttgaataaacatcttcaaccttaaaagagaaaatgataggaagagatagatggagataaatgatgcattaaagaatatgacgtgtctaaatacca |
522 |
Q |
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| T |
16470345 |
cctatttgaataaacatcttcaaccttaaaagagaaaatgataggaagagatagatggagataaatgatgtattaaagaatatgatgtgtctaaatacca |
16470444 |
T |
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| Q |
523 |
ttgttgtaaatcttaattaatgataaaaagaagaaaac |
560 |
Q |
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| T |
16470445 |
ttgttgtaaatcttaattaatgataaaaagaagaaaac |
16470482 |
T |
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