View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_31 (Length: 270)
Name: NF21397_low_31
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 25117605 - 25117768
Alignment:
| Q |
1 |
cttatatcttattttatatattataccaacaaaacactttgttttttcatcaccctaagtttcctacctcttagtcttctccatatatcatccttctctt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25117605 |
cttatatcttatcttatatattataccaacaaaacactttgtttcttcatcaccctaagtttcctacctcttagtcttctccatatatcatccttctctc |
25117704 |
T |
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| Q |
101 |
aatccaaatgaatacca-ccttaacccttgaaagttcaaactcactcactcttaatttctagct |
163 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25117705 |
aatccaaatgaataccacccttaacccttgaaagttcaaactcactcactcttaatttctagct |
25117768 |
T |
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