View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_33 (Length: 264)
Name: NF21397_low_33
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44490824 - 44491066
Alignment:
| Q |
1 |
cgtttgtgtatgcgtgtggtaccaaattttgacataaaatcttgctcaccatttagtgctccaaacaaccaattaaagaccataacatctaaaaaagtgt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44490824 |
cgtttgtgtatgcgtgtggcaccaaattttgacataaaatcttgctcaccatttagtgctccaaacaaccaattaaagaccataacatctaaaaaagtgt |
44490923 |
T |
|
| Q |
101 |
ttccttgagatatgcttttgcgtgcgcatgatactcatttggggccacgaaatattggacaatccactaatatggtcttaaagatactccttgttgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
44490924 |
ttccttgagatatgcttttgcgtgcgcatgatactcatttggggccacgaaatattggacaatccactaatatggtcttaaa-atactcctttttgttgt |
44491022 |
T |
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| Q |
201 |
ttttaagttgaacaagcaatttagccttggaaaatacttagatg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44491023 |
ttttaagttgaacaagcaatttagccttggaaaatacttagatg |
44491066 |
T |
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