View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_35 (Length: 247)
Name: NF21397_low_35
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_35 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 240796 - 240553
Alignment:
| Q |
4 |
tcgaagaatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
103 |
Q |
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| T |
240796 |
tcgaaaaatatggggtgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattg |
240697 |
T |
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| Q |
104 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240696 |
caatcttccgagtctcagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataag |
240597 |
T |
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| Q |
204 |
agtgtaacacctaaatttgaaagcaaagtaaaatggatttaatt |
247 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
240596 |
agtgtaacacctaaatgtgaaagcaaagtaaaatggatttaatt |
240553 |
T |
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