View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_40 (Length: 227)
Name: NF21397_low_40
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4116434 - 4116656
Alignment:
| Q |
1 |
ccaaaactctcaatgatggacttgtcaatctgcatattaacacctcatattacatatcaaactctcaataatgtacattatcgtacaaaagaaaaacact |
100 |
Q |
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| T |
4116434 |
ccaaaactctcaatgatggacttgtcaatctgcatattaacacctcatattatatatcaaactctcaataatgtacattatcgtacaaaagaaaaacact |
4116533 |
T |
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| Q |
101 |
tttgatcactaataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgttt |
200 |
Q |
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| T |
4116534 |
tatgatcactaataatcttaccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcattt |
4116633 |
T |
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| Q |
201 |
cgcaatgaagacctgtaaaatgt |
223 |
Q |
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| T |
4116634 |
cgcaatgaagacctgtaaaatgt |
4116656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 4136435 - 4136535
Alignment:
| Q |
119 |
taccaaggttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatatgtggttttatcaaggtcgtttcgcaatgaagacctgtaa |
218 |
Q |
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| T |
4136435 |
taccaagcttctaagtgaaattgttttgagattgggatcaatgtcaaagatagttgcatatgaggttttttcaacgtcctcccgcaatgaagacctgtaa |
4136534 |
T |
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| Q |
219 |
a |
219 |
Q |
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| T |
4136535 |
a |
4136535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 4127505 - 4127557
Alignment:
| Q |
127 |
ttctaagtgaaatcgttttgagattaggatctatgtcgaagattgttccatat |
179 |
Q |
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|||| |||||||| ||||||||||| ||||||||||| ||||| ||| ||||| |
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| T |
4127505 |
ttctgagtgaaattgttttgagattgggatctatgtcaaagatagttgcatat |
4127557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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