View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_low_42 (Length: 219)

Name: NF21397_low_42
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_low_42
NF21397_low_42
[»] chr3 (17 HSPs)
chr3 (47-165)||(18026038-18026156)
chr3 (47-165)||(3171520-3171638)
chr3 (47-165)||(27864986-27865103)
chr3 (48-163)||(24107340-24107455)
chr3 (47-165)||(38758639-38758757)
chr3 (51-161)||(19860526-19860635)
chr3 (47-165)||(54446051-54446169)
chr3 (50-99)||(21792251-21792300)
chr3 (47-100)||(27864830-27864883)
chr3 (47-90)||(31596749-31596792)
chr3 (47-96)||(24107182-24107231)
chr3 (51-165)||(46685453-46685566)
chr3 (47-99)||(38758860-38758912)
chr3 (47-86)||(16907961-16908000)
chr3 (122-164)||(14812615-14812657)
chr3 (47-149)||(46684129-46684230)
chr3 (54-87)||(14812465-14812498)
[»] chr5 (13 HSPs)
chr5 (47-165)||(23322129-23322247)
chr5 (47-165)||(5840908-5841026)
chr5 (47-165)||(15933387-15933505)
chr5 (51-166)||(25088976-25089091)
chr5 (51-166)||(25146945-25147060)
chr5 (47-100)||(23322350-23322403)
chr5 (47-102)||(43183261-43183316)
chr5 (47-100)||(25088435-25088488)
chr5 (47-100)||(25146404-25146457)
chr5 (47-87)||(5841142-5841182)
chr5 (47-87)||(34634099-34634139)
chr5 (47-100)||(9379961-9380014)
chr5 (47-100)||(9380705-9380758)
[»] chr8 (5 HSPs)
chr8 (47-165)||(30905913-30906031)
chr8 (47-165)||(18202804-18202922)
chr8 (47-100)||(10536031-10536084)
chr8 (47-87)||(10536792-10536832)
chr8 (47-87)||(32539450-32539490)
[»] chr4 (28 HSPs)
chr4 (47-161)||(49028294-49028408)
chr4 (47-166)||(10286441-10286560)
chr4 (47-165)||(36098776-36098894)
chr4 (47-165)||(10468511-10468629)
chr4 (47-165)||(52677739-52677857)
chr4 (47-165)||(21038301-21038417)
chr4 (47-162)||(16067514-16067629)
chr4 (47-165)||(12585189-12585307)
chr4 (48-100)||(3990927-3990979)
chr4 (47-162)||(622247-622362)
chr4 (99-165)||(3990758-3990824)
chr4 (71-165)||(9268210-9268304)
chr4 (47-97)||(10468735-10468785)
chr4 (47-97)||(52677583-52677633)
chr4 (51-100)||(9268058-9268107)
chr4 (47-100)||(9450910-9450963)
chr4 (47-87)||(4437711-4437751)
chr4 (47-87)||(21325695-21325735)
chr4 (47-87)||(45667262-45667302)
chr4 (47-100)||(12585410-12585463)
chr4 (47-96)||(16067355-16067404)
chr4 (51-100)||(17931323-17931372)
chr4 (51-100)||(49028515-49028564)
chr4 (47-87)||(4439038-4439078)
chr4 (47-87)||(9449746-9449786)
chr4 (47-87)||(10202709-10202749)
chr4 (47-87)||(25225821-25225861)
chr4 (47-87)||(28450781-28450821)
[»] chr6 (6 HSPs)
chr6 (52-165)||(5367451-5367564)
chr6 (51-165)||(3658987-3659101)
chr6 (47-166)||(28944276-28944395)
chr6 (47-100)||(5367667-5367720)
chr6 (47-165)||(8286819-8286936)
chr6 (47-100)||(3659204-3659256)
[»] chr2 (9 HSPs)
chr2 (47-161)||(38694919-38695033)
chr2 (47-165)||(18171267-18171385)
chr2 (47-165)||(42962955-42963073)
chr2 (47-100)||(4733335-4733388)
chr2 (47-100)||(14159237-14159290)
chr2 (47-100)||(14160408-14160461)
chr2 (47-100)||(18166664-18166717)
chr2 (51-100)||(38695140-38695189)
chr2 (47-100)||(4734204-4734257)
[»] scaffold0006 (2 HSPs)
scaffold0006 (47-164)||(93819-93936)
scaffold0006 (47-100)||(93662-93715)
[»] chr7 (6 HSPs)
chr7 (51-161)||(4265011-4265121)
chr7 (47-165)||(8905826-8905944)
chr7 (47-86)||(25749396-25749435)
chr7 (48-97)||(4265231-4265280)
chr7 (47-87)||(8329046-8329086)
chr7 (47-87)||(8905671-8905711)
[»] scaffold0008 (2 HSPs)
scaffold0008 (47-166)||(266652-266770)
scaffold0008 (47-100)||(266872-266925)
[»] scaffold0069 (2 HSPs)
scaffold0069 (47-164)||(20083-20204)
scaffold0069 (47-100)||(19926-19979)
[»] chr1 (6 HSPs)
chr1 (47-100)||(9114850-9114903)
chr1 (92-157)||(30335123-30335188)
chr1 (47-87)||(14903837-14903877)
chr1 (94-165)||(37499250-37499321)
chr1 (47-85)||(9116064-9116102)
chr1 (47-100)||(14904583-14904636)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 18026156 - 18026038
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  18026156 tttgttggttacattttagtcccataagttattaacgttaccatttagtccctttaagccatcttctgtcaatcaaataaatctccaccgtcaaaaccgt 18026057  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||||||||||||||||||    
T  18026056 taatccaatgtctaaggtg 18026038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 3171520 - 3171638
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||  ||||||  |||| |||||| ||| ||||| ||||||||||    
T  3171520 tttgttggttacattttagtcccataagttattaatgttacaatttggtccctttaagttatcttccgtcaaccaaatacatccccaccgtcaaaaccgt 3171619  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||||||||||||||||||    
T  3171620 taatccaatgtctaaggtg 3171638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 27865103 - 27864986
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||||  |||| |||||||||| ||||| ||||||||||    
T  27865103 tttgttggttacattttagtcccataagttattaacgttacaatttggt-cctttaagtcatcttccgtcaaccaaataaatccccaccgtcaaaaccgt 27865005  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||| ||||||||    
T  27865004 taacccaatgactaaggtg 27864986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 24107455 - 24107340
Alignment:
Q  48 ttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgtt 147  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||  | || |||||||||  ||||| |||||||||||    
T  24107455 ttgttggttacattttagtcccataagttattaacgttacaatttggtcccgttaagtcatcttccgttaaccaaataaattcccaccgtcaaaaccgtt 24107356  T
Q  148 aatccaatgtctaagg 163  Q
    || |||||||||||||    
T  24107355 aagccaatgtctaagg 24107340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 38758639 - 38758757
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||  ||||||  || | ||||||||| |||||  ||||||||||    
T  38758639 tttgttggttacattttagtcccataagttattaacgttacaatttagtccctttaagttatcttccctctaccaaataaatttccactgtcaaaaccgt 38758738  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  38758739 taacccaatgtctaaggtg 38758757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 19860526 - 19860635
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||  ||||||  |||| ||||||| |||||||| |||||||||||||     
T  19860526 ttggttacattttagtcccataagttattaacgttacaatttggt-cctttaagtgatcttccgtcaaccaaataattctccaccgtcaaaaccgttaag 19860624  T
Q  151 ccaatgtctaa 161  Q
    |||||||||||    
T  19860625 ccaatgtctaa 19860635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 54446051 - 54446169
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||| |||||||||| ||| |||||||||||||||||| || ||||||||||||| |||||||  |||| |||||||||   |||| ||||||||||    
T  54446051 tttgttgattacattttaatcctataagttattaacgttacaatttggtccctttaagtcatcttccgtcaaacaaataaattctcaccgtcaaaaccgt 54446150  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  54446151 taagccaatgtctaaggtg 54446169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 21792251 - 21792300
Alignment:
Q  50 gttggttacattttagtcccataagttattaacgttaccatgtggtccct 99  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||    
T  21792251 gttggttacattttagtcccataagttattaacgttacaatttggtccct 21792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 27864830 - 27864883
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  27864830 tttgttggttacattttggtcccataagttattaacgttacaatttggtccctt 27864883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 31596792 - 31596749
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccat 90  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  31596792 tttgttggttacattttggtcccataagttattaacgttaccat 31596749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 24107182 - 24107231
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtc 96  Q
    ||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  24107182 tttgttggttacattttggtcccataagttattaacgttacaatttggtc 24107231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 46685566 - 46685453
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||||||||||| |||||||||||||||| | ||||  | | ||||| |||||  ||||||  |||| ||||||||||  |||| || ||||||||||     
T  46685566 ttggttacattttggtcccataagttattatcattacgttatagtccc-ttaagttatcttccgtcaaccaaataaatccacaccgtcgaaaccgttaac 46685468  T
Q  151 ccaatgtctaaggtg 165  Q
     ||||||||||||||    
T  46685467 acaatgtctaaggtg 46685453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 38758912 - 38758860
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccct 99  Q
    ||||||||||||||||| |||||||||||||| |||||||  || ||||||||    
T  38758912 tttgttggttacattttggtcccataagttatcaacgttataatttggtccct 38758860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 16907961 - 16908000
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgtta 86  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  16907961 tttgttggttacgttttggtcccataagttattaacgtta 16908000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 14812657 - 14812615
Alignment:
Q  122 aataaatctccaccatcaaaaccgttaatccaatgtctaaggt 164  Q
    |||||||||||||| ||||||||||||  ||||||||||||||    
T  14812657 aataaatctccaccgtcaaaaccgttaggccaatgtctaaggt 14812615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 46684129 - 46684230
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||  ||||||||||||||||| ||||  | ||||||| |||||  ||||||  |||  |||||||||| ||||| ||| ||| ||    
T  46684129 tttgttggttacattttgatcccataagttattaacattacgttttggtccc-ttaagttatcttccgtcagccaaataaatcgccaccgtcagaactgt 46684227  T
Q  147 taa 149  Q
    |||    
T  46684228 taa 46684230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 14812465 - 14812498
Alignment:
Q  54 gttacattttagtcccataagttattaacgttac 87  Q
    |||||||||| |||||||||||||||||||||||    
T  14812465 gttacattttggtcccataagttattaacgttac 14812498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 23322129 - 23322247
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||  |||| |||||||||||||||| ||||||||||    
T  23322129 tttgttggttacattttagtcccataagttattaatgttacaatttggtccctttaagtcatcttccgtcaagcaaataaatctccaccgtcaaaaccgt 23322228  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  23322229 taagccaatgtctaaggtg 23322247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 5840908 - 5841026
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||| |||||||| |||||||||||||||||||| || || |||||||||| |||||||  |||| |||||||||| ||||| ||||||||||    
T  5840908 tttgttggttatattttagtgccataagttattaacgttacaatttgatccctttaagtcatcttccgtcaaccaaataaatccccaccgtcaaaaccgt 5841007  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  5841008 taagccaatgtctaaggtg 5841026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 15933387 - 15933505
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||| ||||||||| ||||||||||||||||||| || | |||||||||||| ||||||  |||| |||||||||| ||||| ||||||||||    
T  15933387 tttgttggttatattttagtctcataagttattaacgttacaatttagtccctttaagctatcttccgtcaaccaaataaatccccaccgtcaaaaccgt 15933486  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| ||||||| |||||||    
T  15933487 taacccaatgtttaaggtg 15933505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 25089091 - 25088976
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||||| ||||||||  ||||||||||||| | ||| || || |||||||||| ||||||||||||| ||||||||| |||||| ||||||| |||||     
T  25089091 ttggttatattttagtgtcataagttattaatgctacaatttgatccctttaagtcatcttctatcaaccaaataaatttccaccgtcaaaacggttaag 25088992  T
Q  151 ccaatgtctaaggtga 166  Q
    ||||||||||||||||    
T  25088991 ccaatgtctaaggtga 25088976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 25147060 - 25146945
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||||| ||||||||  ||||||||||||| | ||| || || |||||||||| ||||||||||||| ||||||||| |||||| ||||||| |||||     
T  25147060 ttggttatattttagtgtcataagttattaatgctacaatttgatccctttaagtcatcttctatcaaccaaataaatttccaccgtcaaaacggttaag 25146961  T
Q  151 ccaatgtctaaggtga 166  Q
    ||||||||||||||||    
T  25146960 ccaatgtctaaggtga 25146945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 23322403 - 23322350
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| || |||||||||||||||||||| || |||||||||    
T  23322403 tttgttggttacattttggttccataagttattaacgttacaatttggtccctt 23322350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 43183261 - 43183316
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtcccttta 102  Q
    ||||||||||||||||| ||||||||| |||||||| |||| || |||||||||||    
T  43183261 tttgttggttacattttggtcccataaattattaacattacaatttggtcccttta 43183316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 25088435 - 25088488
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| || |||||||||    
T  25088435 tttgttggttacattttggtcgcataaattattaacgttacaatttggtccctt 25088488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 25146404 - 25146457
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| || |||||||||    
T  25146404 tttgttggttacattttggtcgcataaattattaacgttacaatttggtccctt 25146457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5841182 - 5841142
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  5841182 tttgttggttacattttggtcccataaattattaacgttac 5841142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 34634099 - 34634139
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  34634099 tttgttggttacaatttggtcccataagttattaacgttac 34634139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 9379961 - 9380014
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| || ||| ||||||||||||||||  | |||||||||    
T  9379961 tttgttggttacattttggttccacaagttattaacgttacgttttggtccctt 9380014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 9380758 - 9380705
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||||||||  |||||||||||||||| |||||  | |||||||||    
T  9380758 tttgttggttacattttgatcccataagttattaatgttacgttttggtccctt 9380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 30906031 - 30905913
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||| ||||||||||  |||| ||||||||||    
T  30906031 tttgttggttacattttagtcccataagttattaacgttacaatttggtccctttaagtcatcttccgtcaaccaaataaatcatcaccgtcaaaaccgt 30905932  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  30905931 taagccaatgtctaaggtg 30905913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 18202804 - 18202922
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||| ||||||||| ||| ||||||||||||| ||||| || || ||| ||||||  |||||| ||||| |||||||||||||||| ||||||||||    
T  18202804 tttgttgattacattttcgtctcataagttattaatgttacaatttgatccttttaagtaatcttccatcaagcaaataaatctccaccgtcaaaaccgt 18202903  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||  ||||||||||||||    
T  18202904 taagtcaatgtctaaggtg 18202922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 10536031 - 10536084
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| |||||||||| ||||||| ||||  | |||||||||    
T  10536031 tttgttggttacattttggtcccataagatattaacattacgttttggtccctt 10536084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 10536832 - 10536792
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  10536832 tttgttggttacattttgatcccataagttattaatgttac 10536792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 32539490 - 32539450
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  32539490 tttgttggttacattttaatctcataagttattaacattac 32539450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 49028294 - 49028408
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||  |||| |||||||||| ||||| ||||||||||    
T  49028294 tttgttggttacattttagtcccataaattattaacgttaccatttggtccctttaagctatcttccgtcaaccaaataaatccccaccgtcaaaaccgt 49028393  T
Q  147 taatccaatgtctaa 161  Q
    |||  ||||||||||    
T  49028394 taactcaatgtctaa 49028408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 10286441 - 10286560
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||| ||||||||||||||| || || |||||||||| |||||||  |||| ||||||| | |||||| ||||||||||    
T  10286441 tttgttggttacattttagtcccattagttattaacgttacaatttgatccctttaagtcatcttccttcaaccaaataattttccaccgtcaaaaccgt 10286540  T
Q  147 taatccaatgtctaaggtga 166  Q
    |||  |||||||||||||||    
T  10286541 taaatcaatgtctaaggtga 10286560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 36098776 - 36098894
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||| |||||||| |||||| ||||||||||||  || |||||||||||||| ||||||  ||||  ||||||||||||||| ||||||||||    
T  36098776 tttgttggttatattttagttccataaattattaacgttataatttggtccctttaagctatcttccgtcaactaaataaatctccaccgtcaaaaccgt 36098875  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||||||||| |||||||||    
T  36098876 taatccaatatctaaggtg 36098894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 10468511 - 10468629
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||||||   |||||| |||||||||| || ||||||||||||| |||||||  |||| |||||||||  ||||| ||||||||||    
T  10468511 tttgttggttacattttagtcatctaagtttttaacgttacaatttggtccctttaagtcatcttccgtcaaccaaataaattcccaccgtcaaaaccgt 10468610  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| ||||| |||||||||    
T  10468611 taacccaatatctaaggtg 10468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 52677857 - 52677739
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||| ||||||||||||| ||||  || |||||||||||||  |||||   |||| |||||||||   |||| ||||||||||    
T  52677857 tttgttggttacattttagtctcataagttattaatgttataatttggtccctttaagttatcttacgtcaaccaaataaattctcaccgtcaaaaccgt 52677758  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||||||||||||||||||    
T  52677757 taatccaatgtctaaggtg 52677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 21038417 - 21038301
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||| |||||||||||||||||  ||||||||||||||||  || | |||| |||||| |||||||  |||| |||||||||||||||| ||||||||||    
T  21038417 tttgctggttacattttagtcc--taagttattaacgttataatttagtccatttaagtcatcttccgtcaaccaaataaatctccaccgtcaaaaccgt 21038320  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||| ||||    
T  21038319 taagccaatgtctatggtg 21038301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 16067629 - 16067514
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||    || |||||||||   |||  ||||||||||    
T  16067629 tttgttggttacattttagtctcataagttattaacgttacaatttggtccccttaagtcatcttccgctaaccaaataaattctcactgtcaaaaccgt 16067530  T
Q  147 taatccaatgtctaag 162  Q
    ||| ||||||||||||    
T  16067529 taagccaatgtctaag 16067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 12585189 - 12585307
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||| ||||||||||||| |||||||||||||| |||| || || |||||||||| ||||||   ||||  |||||||||  |||  ||||||| ||    
T  12585189 tttgttgattacattttagtctcataagttattaacattacaatttgatccctttaagtcatctttcgtcaacaaaataaatcctcactgtcaaaactgt 12585288  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  12585289 taaaccaatgtctaaggtg 12585307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 3990979 - 3990927
Alignment:
Q  48 ttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  3990979 ttgttggttacattttggtcccataagttattaacgttacaatttggtccctt 3990927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 622362 - 622247
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||| || ||| |||||||| ||||| || || ||  |||||| ||| ||  ||||| |||||||||| || |  |||| |||||    
T  622362 tttgttggttacattttagacctatatgttattaatgttacgatttgatctttttaagtcatttttcatcaaccaaataaatcccctctgtcaacaccgt 622263  T
Q  147 taatccaatgtctaag 162  Q
    ||| ||||||||||||    
T  622262 taagccaatgtctaag 622247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 3990758 - 3990824
Alignment:
Q  99 tttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaatccaatgtctaaggtg 165  Q
    |||||| |||||||  |||| |||||||||  ||||| ||||||||||||| |||||||||||||||    
T  3990758 tttaagtcatcttccgtcaaccaaataaattcccaccgtcaaaaccgttaagccaatgtctaaggtg 3990824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 9268304 - 9268210
Alignment:
Q  71 taagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaatccaatgtctaaggtg 165  Q
    ||||||||||||||||| || |  | |||||| |  |||||| | ||| | |||||||| ||||||||||||||||||| |||| ||||||||||    
T  9268304 taagttattaacgttacaatttaattcctttaggttatcttccagcaaccgaataaatccccaccatcaaaaccgttaagccaacgtctaaggtg 9268210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 10468785 - 10468735
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtcc 97  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || ||||||    
T  10468785 tttgttggttacattttggtctcataagttattaacgttacaatttggtcc 10468735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 52677583 - 52677633
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtcc 97  Q
    ||||||||||||| ||| ||||||||||||||||||||||| || ||||||    
T  52677583 tttgttggttacaatttggtcccataagttattaacgttacaatttggtcc 52677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 9268058 - 9268107
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||| ||||||||||||||||| ||||| || |||||||||    
T  9268058 ttggttacattttggtcccataagttattaaagttacaatttggtccctt 9268107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 9450963 - 9450910
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  9450963 tttgttggttacgttttggtcccataagttattaacgttacgttttggtccctt 9450910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 4437711 - 4437751
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  4437711 tttgttggttacaatttggtcccataagttattaacgttac 4437751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 21325735 - 21325695
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  21325735 tttgttggttacattttagtcacattagttattaacgttac 21325695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 45667262 - 45667302
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  45667262 tttgttggttacattttggtctcataagttattaacgttac 45667302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 12585463 - 12585410
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||||||||  || |||||||||||||| |||| || |||||||||    
T  12585463 tttgttggttacattttgatctcataagttattaacattacaatttggtccctt 12585410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 16067355 - 16067404
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtc 96  Q
    |||||||||||||||||||| | |||| ||||||||||||| || |||||    
T  16067355 tttgttggttacattttagttctataaattattaacgttacaatttggtc 16067404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17931323 - 17931372
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||| ||| ||||||||||||||||||||||| |  |||||||||    
T  17931323 ttggttacaatttggtcccataagttattaacgttacaaaatggtccctt 17931372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 49028564 - 49028515
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||| ||||||||| ||||||| ||||| || |||||||||    
T  49028564 ttggttacattttggtcccataaattattaatgttacaatttggtccctt 49028515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 4439078 - 4439038
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||| ||| ||| |||||||||||||||||||    
T  4439078 tttgttggttacaatttggtctcataagttattaacgttac 4439038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 9449746 - 9449786
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||||||||||| |||| ||| |||||||||||||||||||    
T  9449746 tttgttggttacgttttggtctcataagttattaacgttac 9449786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 10202709 - 10202749
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||| |||||||||||| ||||||||| |||||||||||||    
T  10202709 tttgctggttacattttggtcccataaattattaacgttac 10202749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 25225821 - 25225861
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  25225821 tttgttggttatattttggtctcataagttattaacgttac 25225861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 28450781 - 28450821
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  28450781 tttgttggttacattttgatcccataagttattaatgttac 28450821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 5367451 - 5367564
Alignment:
Q  52 tggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaatc 151  Q
    |||||||||||||||| |||||||||||||| |||| || ||||| ||||||| |||||||| |||| |||||||||||||||| ||||||||||||| |    
T  5367451 tggttacattttagtctcataagttattaacattacaatttggtctctttaagtcatcttctgtcaaccaaataaatctccaccgtcaaaaccgttaacc 5367550  T
Q  152 caatgtctaaggtg 165  Q
    ||||||||||||||    
T  5367551 caatgtctaaggtg 5367564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 3658987 - 3659101
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||||||| ||||||||||||||||||||| ||||| || || |||||||||| |||||||  |||| || ||||||||||||| | |||||||||||     
T  3658987 ttggttacagtttagtcccataagttattaaagttacaatttgatccctttaagtcatcttccgtcaaccagataaatctccaccgttaaaaccgttaac 3659086  T
Q  151 ccaatgtctaaggtg 165  Q
    |||||||||||||||    
T  3659087 ccaatgtctaaggtg 3659101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 28944276 - 28944395
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||| || | ||||||||||| ||||| || |||| | ||| ||  |||||   |||| |||||||||||||||| ||||||||||    
T  28944276 tttgttggttacattttaatctcgtaagttattaatgttacaatttggttcttttcagttatctttcgtcaaccaaataaatctccaccgtcaaaaccgt 28944375  T
Q  147 taatccaatgtctaaggtga 166  Q
    ||||| ||||||||||||||    
T  28944376 taatctaatgtctaaggtga 28944395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 5367720 - 5367667
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| || |||||||||||||||||||| || |||||||||    
T  5367720 tttgttggttacattttggttccataagttattaacgttacaatttggtccctt 5367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 8286819 - 8286936
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||| ||||| ||||| |||||||||||  | | || || |||||  ||||||| |||| |||||||||| ||||| | | ||||||    
T  8286819 tttgttggttacattttggtcccttaagtaattaacgttacattttagttcc-ttaagttatcttctgtcaaccaaataaatccccaccgttagaaccgt 8286917  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||   |||||||||||||    
T  8286918 taacaaaatgtctaaggtg 8286936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 3659256 - 3659204
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||| |||||||||| |||||||||||||||||| |||| || |||||||||    
T  3659256 tttgttagttacattttggtcccataagttattaac-ttacaatttggtccctt 3659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 38694919 - 38695033
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||  |||| |||||||||| ||||| ||||||||||    
T  38694919 tttgttggttacattttagtcccataaattattaacgttaccatttggtccctttaagctattttccgtcaaccaaataaatccccaccgtcaaaaccgt 38695018  T
Q  147 taatccaatgtctaa 161  Q
    |||  ||||||||||    
T  38695019 taactcaatgtctaa 38695033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 18171385 - 18171267
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||||||||||||||||||||  |||| || |||||| || ||| |||||||  |||| |||||||||  ||||| ||||||||||    
T  18171385 tttgttggttacattttagtcccataagttattaaaattacaatttggtcctttcaagtcatcttccgtcaaccaaataaattcccaccgtcaaaaccgt 18171286  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  18171285 taaaccaatgtctaaggtg 18171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 42963073 - 42962955
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||| ||||||||||||||||||| || |||| |||| ||| |||||||  ||||  ||||||||  ||||| ||||||||||    
T  42963073 tttgttggttacattttagtctcataagttattaacgttacaatttggtgccttcaagtcatcttccgtcaactaaataaattcccaccgtcaaaaccgt 42962974  T
Q  147 taatccaatgtctaaggtg 165  Q
    ||| |||||||||||||||    
T  42962973 taaaccaatgtctaaggtg 42962955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 4733335 - 4733388
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||  | |||||||||    
T  4733335 tttgttggttacattttggtcccataagttattaacattacgttttggtccctt 4733388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 14159237 - 14159290
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  14159237 tttgttggttacgttttggtcccataagttattaacgttacgttttggtccctt 14159290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 14160461 - 14160408
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  14160461 tttgttggttacgttttggtcccataagttattaacgttacgttttggtccctt 14160408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 18166664 - 18166717
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||||||||  || ||||||||||||||||||| || |||||||||    
T  18166664 tttgttggttacattttgatctcataagttattaacgttacaatttggtccctt 18166717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 38695189 - 38695140
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||| ||||||||| ||||||||||||| || |||||||||    
T  38695189 ttggttacattttggtcccataaattattaacgttacaatttggtccctt 38695140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4734257 - 4734204
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||||||||||||||  ||| ||||||||||||||||||  | |||||||||    
T  4734257 tttgttggttacattttgatcctataagttattaacgttacgttttggtccctt 4734204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 93936 - 93819
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||||||||||||||||||| ||||||||||||| || || ||| ||||||| ||||||  | || |||||||||| ||||| ||||||||||    
T  93936 tttgttggttacattttagtcccataaattattaacgttacaatttgatccttttaagctatcttccgttaaccaaataaatccccaccgtcaaaaccgt 93837  T
Q  147 taatccaatgtctaaggt 164  Q
    ||||||||||||||||||    
T  93836 taatccaatgtctaaggt 93819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 93662 - 93715
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    |||||| |||||||||| ||||||||| ||||||||||||| || | |||||||    
T  93662 tttgttagttacattttggtcccataaattattaacgttacaatttagtccctt 93715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 4265011 - 4265121
Alignment:
Q  51 ttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaat 150  Q
    ||||| ||||||||||| |||||||||||||| |||| || ||||| |||||||| || |||  |||| |||||||||| ||||| |||||||||||||     
T  4265011 ttggtgacattttagtctcataagttattaacattacaatttggtctctttaagctattttccgtcaaccaaataaatccccaccgtcaaaaccgttaac 4265110  T
Q  151 ccaatgtctaa 161  Q
    |||||||||||    
T  4265111 ccaatgtctaa 4265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 8905944 - 8905826
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    ||||||||||| |||||| |  ||||| ||||||| ||||| || ||  | ||||||| |||||||  |||| |||||||||  | ||| ||||||||||    
T  8905944 tttgttggttatattttactttcataaattattaaggttacaatttgaccactttaagtcatcttccgtcaaccaaataaattcctaccgtcaaaaccgt 8905845  T
Q  147 taatccaatgtctaaggtg 165  Q
    |||  ||||||||||||||    
T  8905844 taagtcaatgtctaaggtg 8905826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 25749435 - 25749396
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgtta 86  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  25749435 tttgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4265280 - 4265231
Alignment:
Q  48 ttgttggttacattttagtcccataagttattaacgttaccatgtggtcc 97  Q
    |||| |||||||||||  |||||||||||||||||||||| || ||||||    
T  4265280 ttgtcggttacattttgatcccataagttattaacgttacaatttggtcc 4265231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 8329086 - 8329046
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||||||| ||| || ||||||||||||||||    
T  8329086 tttgttggttacattttggtctcaaaagttattaacgttac 8329046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 8905671 - 8905711
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  8905671 tttgttggttacattttggtctcataagttattaatgttac 8905711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 266652 - 266770
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgt 146  Q
    |||||||||||||||||||||| |||||||||||| ||||  || ||||||||||||   |||||   |||| ||||||||| |||  | ||||||||||    
T  266652 tttgttggttacattttagtccgataagttattaatgttataatttggtccctttaaattatcttacgtcaaccaaataaat-tcccacgtcaaaaccgt 266750  T
Q  147 taatccaatgtctaaggtga 166  Q
    ||| ||||||||||||||||    
T  266751 taacccaatgtctaaggtga 266770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 266925 - 266872
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| ||| |||||||||||||| |||  || |||||||||    
T  266925 tttgttggttacattttggtcacataagttattaaccttataatttggtccctt 266872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 20204 - 20083
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctttaagccatcttctatcaatcaaataaatctccacc----atcaaaa 142  Q
    ||||||||||| |||||| | |||||| ||||||||||||| || |||||||||||| | |||||| |||||  ||||||||| |||||     ||||||    
T  20204 tttgttggttatattttaattccataatttattaacgttacaatttggtccctttaaactatcttccatcaactaaataaatccccaccgtcactcaaaa 20105  T
Q  143 ccgttaatccaatgtctaaggt 164  Q
    ||||||| | ||||||||||||    
T  20104 ccgttaacctaatgtctaaggt 20083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 19926 - 19979
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || |||||||||    
T  19926 tttgttggttacattttggtcgcataagttattaacgttacaatttggtccctt 19979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 9114850 - 9114903
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||  | |||||||||    
T  9114850 tttgttggttacattttggtcccataagttattaacgttacgttttggtccctt 9114903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 30335188 - 30335123
Alignment:
Q  92 tggtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaatccaatgt 157  Q
    |||| |||||||| ||||||  ||||| ||||||||| |||||| ||||||||||||| |||||||    
T  30335188 tggttcctttaagtcatctttgatcaaccaaataaatttccaccgtcaaaaccgttaagccaatgt 30335123  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 14903837 - 14903877
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttac 87  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  14903837 tttgttggttacattttgatcccataagttattaacgttac 14903877  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 37499250 - 37499321
Alignment:
Q  94 gtccctttaagccatcttctatcaatcaaataaatctccaccatcaaaaccgttaatccaatgtctaaggtg 165  Q
    ||||||||||| |||||||| | || ||||||||| | |||| |||||||||||||  || |||||||||||    
T  37499250 gtccctttaagtcatcttctgttaaccaaataaattttcaccgtcaaaaccgttaagtcagtgtctaaggtg 37499321  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 9116102 - 9116064
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgtt 85  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9116102 tttgttggttacattttggtctcataagttattaacgtt 9116064  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 14904636 - 14904583
Alignment:
Q  47 tttgttggttacattttagtcccataagttattaacgttaccatgtggtccctt 100  Q
    ||||||||||||||||| |||||||||| ||||||| ||||  | |||||||||    
T  14904636 tttgttggttacattttggtcccataagatattaacattacgttttggtccctt 14904583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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