View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_44 (Length: 206)
Name: NF21397_low_44
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 39470098 - 39469926
Alignment:
| Q |
12 |
gtagataatactggggtccgttttgtgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagtt |
111 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39470098 |
gtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattaccctctttctgatttgagtt |
39469999 |
T |
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| Q |
112 |
cggttttaccagaacgattcttagataggacagcagagattggaagggttattggatgggctccacagacaca |
184 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39469998 |
cggttttaccagaaggattcttagataggacagaagagattggaagggttattggatgggctccacagacaca |
39469926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 39457633 - 39457464
Alignment:
| Q |
12 |
gtagataatactggggtccgttttgtgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagtt |
111 |
Q |
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||||| |||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
39457633 |
gtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccatctgattacactctttctgatttgagtt |
39457534 |
T |
|
| Q |
112 |
cggttttaccagaacgattcttagataggacagcagagattggaagggttattggatgggctccacagac |
181 |
Q |
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| T |
39457533 |
cggttttaccagaaggattcttagataggacagcagagattggaagggttattggatgggccccacagac |
39457464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 39463874 - 39463728
Alignment:
| Q |
33 |
tttgtgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattct |
132 |
Q |
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| T |
39463874 |
tttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgatttaggttccgttttacccgaaggattct |
39463775 |
T |
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| Q |
133 |
tagataggacagcagagattggaagggttattggatgggctccacag |
179 |
Q |
| |
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|| || |||| | ||||||||||||||| ||||| |||||||||||| |
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| T |
39463774 |
tatatcggactgtagagattggaagggtgattggttgggctccacag |
39463728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 39451865 - 39452001
Alignment:
| Q |
42 |
tctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttagatagga |
141 |
Q |
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||||| ||||||||| |||| |||||| |||||| ||| || ||||||| | ||||||||||| || ||||||||||||||||| ||||||||||| | | |
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| T |
39451865 |
tctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgatctgtgttcggttttaccagaaggattcttagatcgaa |
39451964 |
T |
|
| Q |
142 |
cagcagagattggaagggttattggatgggctccaca |
178 |
Q |
| |
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| | ||||||||||||||| ||||| ||||| ||||| |
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| T |
39451965 |
cggaagagattggaagggtgattggttgggccccaca |
39452001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 39487317 - 39487460
Alignment:
| Q |
29 |
ccgttttgtgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacga |
128 |
Q |
| |
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|||||||||||| ||||| |||||||| |||| ||||| | ||||||| | || ||||||| |||||||||||||||| ||||||||||| ||| || |
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| T |
39487317 |
ccgttttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaagga |
39487416 |
T |
|
| Q |
129 |
ttcttagataggacagcagagattggaagggttattggatgggc |
172 |
Q |
| |
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||||||||| | ||| ||| |||||||||||| ||||||||||| |
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| T |
39487417 |
ttcttagatcgaacaacagggattggaagggtaattggatgggc |
39487460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 39472895 - 39473031
Alignment:
| Q |
42 |
tctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttagatagga |
141 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| |||| ||||||| |||||||| ||||||| |||| |||||| ||| |||| ||||| ||| |
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| T |
39472895 |
tctcttcgtaaacctccaccggagggcaccatggcctcgccctctgattaccctctttttgatttgggttcaagtttacccgaaggatttttagagcgga |
39472994 |
T |
|
| Q |
142 |
cagcagagattggaagggttattggatgggctccaca |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |
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| T |
39472995 |
cagcagagattggaagggttgttggatgggccccaca |
39473031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 39455535 - 39455629
Alignment:
| Q |
84 |
tctgattgccctctttctgatttgagttcggttttaccagaacgattcttagataggacagcagagattggaagggttattggatgggctccaca |
178 |
Q |
| |
|
||||||| | |||||||||||||| ||||| ||||||| ||| ||||||||||| | || ||||||||||||||||| ||||| ||||||||||| |
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| T |
39455535 |
tctgattacactctttctgatttgtgttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattggttgggctccaca |
39455629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 39461146 - 39461257
Alignment:
| Q |
70 |
ccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttagataggacagcagagattggaagggttattggatg |
169 |
Q |
| |
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|||||||||| || ||||||| | ||||| |||| ||| | | ||||||||| ||| | ||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
39461146 |
ccatggttgcaccctctgattactctcttactgaattgggcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatg |
39461245 |
T |
|
| Q |
170 |
ggctccacagac |
181 |
Q |
| |
|
|||||| ||||| |
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| T |
39461246 |
ggctccgcagac |
39461257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 39476371 - 39476507
Alignment:
| Q |
36 |
gtgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttag |
135 |
Q |
| |
|
||||| ||||| |||||||| ||| | |||||||| |||| ||| || || |||| |||||||| ||||||| || ||||||||| ||| ||||||||| |
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|
| T |
39476371 |
gtgtggtctctgcgtaaacctccagcaaagggcactatggctgcaccctcggattaccctctttatgatttgggtctggttttacctgaaggattcttag |
39476470 |
T |
|
| Q |
136 |
ataggacagcagagattggaagggttattggatgggc |
172 |
Q |
| |
|
|||| || || |||||||||||| | |||||||||| |
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|
| T |
39476471 |
atagaactgctgagattggaaggatagttggatgggc |
39476507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 39484149 - 39484258
Alignment:
| Q |
63 |
aagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttagataggacagcagagattggaagggtta |
162 |
Q |
| |
|
||||||||||||| ||| || ||||||| | |||||| ||||||| || |||||||||| ||| ||||||||||| | || || |||||||||||| | | |
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|
| T |
39484149 |
aagggcaccatggctgcaccctctgattactctctttatgatttgggtccggttttacctgaaggattcttagatcgaactgccgagattggaaggataa |
39484248 |
T |
|
| Q |
163 |
ttggatgggc |
172 |
Q |
| |
|
|| ||||||| |
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|
| T |
39484249 |
ttagatgggc |
39484258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 43311843 - 43311705
Alignment:
| Q |
37 |
tgtgctctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattgccctctttctgatttgagttcggttttaccagaacgattcttaga |
136 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||| ||||||| || | ||||||||| | |||||||||||||| | |||||||| ||| | |||||||| |
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| T |
43311843 |
tgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttaga |
43311744 |
T |
|
| Q |
137 |
taggacagcagagattggaagggttattggatgggctcc |
175 |
Q |
| |
|
| | ||||| || ||||||||| |||||||||||||| |
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|
| T |
43311743 |
tcgaacagctaggactggaagggtcattggatgggctcc |
43311705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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