View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_5 (Length: 520)
Name: NF21397_low_5
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Original strand, 5689804 - 5690271
Alignment:
| Q |
16 |
attaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaa |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
5689804 |
attaactaatttgtaaaaccagcaatgacagcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtttaccaa |
5689903 |
T |
|
| Q |
116 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689904 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacacc |
5690003 |
T |
|
| Q |
216 |
ttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5690004 |
ttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaaaatgg |
5690103 |
T |
|
| Q |
316 |
aaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatctc |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690104 |
aaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatctc |
5690203 |
T |
|
| Q |
416 |
ctgtgtataactgcataatacaagattaatattaatttaattagtaacattttcacatgcatcaccaa |
483 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
5690204 |
ctgtgtataactgcataattcaagattaatattaatttaattagtaacatttgcacaatcatcaccaa |
5690271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 28 - 435
Target Start/End: Original strand, 25914500 - 25914904
Alignment:
| Q |
28 |
gtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtg |
127 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||| |
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| T |
25914500 |
gtaaaaccagcaatggtagcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttaccaagaagctcttgtg |
25914599 |
T |
|
| Q |
128 |
gcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattcc |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||||||||||||| ||||| |
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|
| T |
25914600 |
gcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattcc |
25914699 |
T |
|
| Q |
228 |
agaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgtagatt |
327 |
Q |
| |
|
|| |||||||||||||| |||||| |||||||| |||||||| || |||||||| || |||| |||||||| ||||||| || |||||||||||| |
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| T |
25914700 |
agtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaacgtgaaaactgtagatt |
25914796 |
T |
|
| Q |
328 |
gcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatctcctgtgtataact |
427 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||||||| || || ||||||||||||| |||||||||||| ||||||||||| || || || || |||| |
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| T |
25914797 |
gcttcatatctgtcaccatacttttctgctttgtgttgaatcaatatgcaaataccagctgttattccaatgcgtttttgtaggtcaccagtatacaact |
25914896 |
T |
|
| Q |
428 |
gcataata |
435 |
Q |
| |
|
|||||||| |
|
|
| T |
25914897 |
gcataata |
25914904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 361
Target Start/End: Complemental strand, 6792803 - 6792538
Alignment:
| Q |
96 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
195 |
Q |
| |
|
|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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|
| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
|
| Q |
196 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
295 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | | |
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|
| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatat |
6792604 |
T |
|
| Q |
296 |
gaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgt |
361 |
Q |
| |
|
||||||| |||||||||| ||||| || |||||||||||| | || ||||| || || ||||||| |
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|
| T |
6792603 |
gaccatactctccaaaataaaaactatatattgcttcatatatgtccccttttttctctgctttgt |
6792538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 395
Target Start/End: Complemental strand, 6800246 - 6799978
Alignment:
| Q |
124 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
223 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
|
| Q |
224 |
ttccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgta |
323 |
Q |
| |
|
|||||| |||||||| ||| | | ||||| ||||| ||| |||||||| | ||||| || | |||||||| |||||||||| |||||||| |
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|
| T |
6800146 |
ttccagttccaccagttacaaccaagtaagtatcctc---ataagttaaataagaaccttgtacataaatatgaccatagtctccaaaataaaaactgta |
6800050 |
T |
|
| Q |
324 |
gattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattcc |
395 |
Q |
| |
|
|||||||||||| | || ||||| || || ||||||| || ||||||| || || |||| ||||||||| |
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|
| T |
6800049 |
tattgcttcatatatgtccccttttttctctgctttgttttgaattaaaacacatattccagctgttattcc |
6799978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 344
Target Start/End: Complemental strand, 22227490 - 22227359
Alignment:
| Q |
210 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctcca |
309 |
Q |
| |
|
|||||||||||| |||||||||||||| || | ||| ||||| ||||| | | || || | ||| |||||||| |||| || |||||||| |||||| |
|
|
| T |
22227490 |
aacaccttcaaagattccagaaccacctgttatagcaagatatgtgtctt---ggtatgtgagataaggtccttgtactgatatatgaccatagtctcca |
22227394 |
T |
|
| Q |
310 |
aaatggaaactgtagattgcttcatatctatcacc |
344 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||||||| |
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|
| T |
22227393 |
aagtagaagctgtaaattgcttcatatctatcacc |
22227359 |
T |
|
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