View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21397_low_7 (Length: 510)

Name: NF21397_low_7
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21397_low_7
NF21397_low_7
[»] chr6 (12 HSPs)
chr6 (1-503)||(30955472-30955974)
chr6 (166-503)||(30945212-30945549)
chr6 (205-398)||(31230110-31230303)
chr6 (238-398)||(31145101-31145261)
chr6 (238-398)||(31189159-31189319)
chr6 (238-376)||(31200966-31201104)
chr6 (1-112)||(30945609-30945719)
chr6 (230-398)||(30961325-30961493)
chr6 (234-398)||(31171410-31171574)
chr6 (235-398)||(31224830-31224993)
chr6 (234-398)||(30992807-30992971)
chr6 (292-376)||(31214580-31214664)
[»] chr8 (1 HSPs)
chr8 (285-365)||(44036038-44036118)


Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 30955974 - 30955472
Alignment:
Q  1 aacttcataaaaatcaatgacaaaacaaccttttacacttcttcagccttaacttatccacatagatcacattggtatttgaatcacatatatgtaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955974 aacttcataaaaatcaatgacaaaacaaccttttacacttcttcagccttaacttatccacatagatcacattggtatttgaatcacatatatgtaatct 30955875  T
Q  101 aattgcttaatatctagaaagtacacnnnnnnntattatgaagaacataccnnnnnnnnnnnnnnacaaaatgaaaagttaacttgaaatatacttatag 200  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  30955874 aattgcttaatatctagaaagtacacaaaaaaatattatgaagaacatacctttttcatttttttacaaaatgaaaagttaacttgaaatatacttatag 30955775  T
Q  201 atccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955774 atccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaac 30955675  T
Q  301 atttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttcaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30955674 atttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcattttcttcaa 30955575  T
Q  401 tggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30955574 tggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtattaacatcaat 30955475  T
Q  501 att 503  Q
    |||    
T  30955474 att 30955472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 166 - 503
Target Start/End: Complemental strand, 30945549 - 30945212
Alignment:
Q  166 acaaaatgaaaagttaacttgaaatatacttatagatccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30945549 acaaaatgaaaagttaacttgaaatatacttatagatccaaatttcaagaagttgaagattccaataatgatcttgtaggagaagaaaccaaaggttttg 30945450  T
Q  266 gtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945449 gtggtatttcaaggatattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac 30945350  T
Q  366 aatcgtcattccttttgcaatctcattttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctgga 465  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  30945349 aatagtcattccttttgcaatctcattttcttcaatggccatcactatgtcagatctcaaatcactatccgtttctagcttattgtatatccaatctgga 30945250  T
Q  466 aaatactcgctagtttgatttgtgttaacatcaatatt 503  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30945249 aaatactcgctagtttgatttgttttaacatcaatatt 30945212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 205 - 398
Target Start/End: Complemental strand, 31230303 - 31230110
Alignment:
Q  205 aaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacattt 304  Q
    |||||||| |||| ||| |||||   || ||||||||||||||||||||  | |||||||||||||||||| |    |||| || | ||||| |||||||    
T  31230303 aaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaagaataggttttggtggtatttccaaacaattcttgttgccttctaacattt 31230204  T
Q  305 caatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||   ||||||| |||| ||||||    
T  31230203 caatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 31230110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 238 - 398
Target Start/End: Original strand, 31145101 - 31145261
Alignment:
Q  238 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 337  Q
    |||||||||||||||| ||| ||||| ||||||||||||||   ||||||| || |||| ||||||||||| ||| |||||||||| |||| |||| |||    
T  31145101 ctagtaggagaagaaagcaacggtttgggtggtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttg 31145200  T
Q  338 gcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
    | ||||||||||||||||||||||| ||||| |||||||   |||||||||||| ||||||    
T  31145201 gaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31145261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 238 - 398
Target Start/End: Original strand, 31189159 - 31189319
Alignment:
Q  238 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 337  Q
    |||||||| |||||||   | ||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||    
T  31189159 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31189258  T
Q  338 gcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
    | ||||||||||||||||||||||| ||||| |||||||   |||||||||| | ||||||    
T  31189259 gaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcgtcttcttc 31189319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 31200966 - 31201104
Alignment:
Q  238 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 337  Q
    |||||||| |||||||   | ||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||    
T  31200966 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31201065  T
Q  338 gcaatgtttgaatgcaccataaaccaacaatcgtcattc 376  Q
    | ||||||||||||||||||||||| ||||| |||||||    
T  31201066 gaaatgtttgaatgcaccataaacccacaattgtcattc 31201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30945719 - 30945609
Alignment:
Q  1 aacttcataaaaatcaatgacaaaacaaccttttacacttcttcagccttaacttatccacatagatcacattggtatttgaatcacatatatgtaatct 100  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30945719 aacttcataaaaatcaataacaatacaaacttctactcttcttt-gccttcagttatccacatagatcacattggtatttgaatcacatatatgtaatct 30945621  T
Q  101 aattgcttaata 112  Q
    | |||| |||||    
T  30945620 acttgcctaata 30945609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 398
Target Start/End: Complemental strand, 30961493 - 30961325
Alignment:
Q  230 ataatgatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtc 328  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||| || || ||||||| || |||| ||||||||||  ||| |||||||||| || |    
T  30961493 ataatgatctagtaggagacgaaagcaatggttttggtggtatttccaatga-attcatgttaacttctaacatttcaactactttactcattgtaggcc 30961395  T
Q  329 gatcatttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
       |||| || ||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||||||||||    
T  30961394 tgccattaggaaatgtttgaatacaccacaaacccacaatggtcattctctttgcaatctcattttcttc 30961325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 234 - 398
Target Start/End: Original strand, 31171410 - 31171574
Alignment:
Q  234 tgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatca 333  Q
    ||||||||| ||||| |||   || ||||||||||| ||||| ||   ||||||  || |||| ||||||||||||||| |||||||||| |||| ||||    
T  31171410 tgatctagtgggagatgaatgtaatggttttggtggcatttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtctatca 31171509  T
Q  334 tttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
     |||| ||||||||||||||||||||||| ||||| |||||||   |||||||||||| ||||||    
T  31171510 cttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31171574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 31224993 - 31224830
Alignment:
Q  235 gatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatca 333  Q
    |||||||| |||||||||| ||| ||||||||||| ||||| || || |||||||||| | || ||||||||||||||| |||||||||| || | ||||    
T  31224993 gatctagtcggagaagaaagcaatggttttggtggcatttccaacga-attcatgctaacatctaacatttcaatcactttactcattgtaggcctatca 31224895  T
Q  334 tttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
    || || || |||||||| ||||| ||||| ||||| |||||||   ||||||||| || ||||||    
T  31224894 ttaggaaacgtttgaatacaccacaaacctacaatggtcattctccttgcaatcttatcttcttc 31224830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 398
Target Start/End: Complemental strand, 30992971 - 30992807
Alignment:
Q  234 tgatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatc 332  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| || || ||| |||  | |||| ||||||||||  ||| |||||||||| ||||   |    
T  30992971 tgatctagtaggagacgaaagcaatggttttggtggtatttccaacga-attaatgtcaacttctaacatttcaactactttactcattgtaggtctgcc 30992873  T
Q  333 atttggcaatgtttgaatgcaccataaaccaacaatcgtcattccttttgcaatctcattttcttc 398  Q
    ||| || ||||||||||| ||||| ||||  ||||| ||||| |  ||||||||||||| ||||||    
T  30992872 attaggaaatgtttgaatacaccacaaactcacaatggtcatcctctttgcaatctcatcttcttc 30992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 31214664 - 31214580
Alignment:
Q  292 ccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatcgtcattc 376  Q
    ||||| ||||||||||| |||||||||||||  |||| ||||||||| | |||||||||||||||||| || || || |||||||    
T  31214664 ccttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattc 31214580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 44036118 - 44036038
Alignment:
Q  285 catgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac 365  Q
    ||||||||| |||||||| ||||||||| |||| ||||| |||| || | | || | ||||||||||||||| ||||||||    
T  44036118 catgctaccatccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaac 44036038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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