View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21397_low_9 (Length: 473)
Name: NF21397_low_9
Description: NF21397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21397_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 8662133 - 8662567
Alignment:
| Q |
11 |
atactgatcaaattgaaaaccatatgcaaatccttagatcatgtcaagtaatcaaaatcagaaaacaataagtcatatatgtgttcatgaattgccaaaa |
110 |
Q |
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| T |
8662133 |
atactgatcaaattgaaaaccatatgcaaatccttagatcatgtcaagtaatcaaaatcagaaaacaataagtcatatatgtgttcatgaattgccaaaa |
8662232 |
T |
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| Q |
111 |
taacaataatgcatagacacaactatttcctttcggttccaatattttatacaatttaattggcctctcaaatttcaacatagagaaaaaacttaaatta |
210 |
Q |
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| T |
8662233 |
taacaataatgcatagacacaactatttcctttcgattccaatattttatacaatttaattggcctctcaaatttcaacatagagaaaaaacttaaatta |
8662332 |
T |
|
| Q |
211 |
gtaatgctcttaattacataacatgataaacattactattttcccttttattatgatgatgacaccttaaagaagtagtgtaaatttgaaagaatgtaaa |
310 |
Q |
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| T |
8662333 |
gtaatgctcttaattacataacatgataaacattactattttcccttttattatgatgatgacaccttaaagaaatagtgtaaatttgaaagaatgtaaa |
8662432 |
T |
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| Q |
311 |
agtactatggtctattatactaaagtttcatatatgaaaaccaaatcaaagcattatgataggtgttgatctcggaaccaaaacagcacaccattttatc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8662433 |
agtactatggtctattatactaaagtttcatatatgaaaaccaaaacaaagcattatgataggtgttgatctcggaaccaaaacagcacatcattttatc |
8662532 |
T |
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| Q |
411 |
aaaataatttaattcaacaataatagtgtaaaacc |
445 |
Q |
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| T |
8662533 |
aaaataatttaattcaacaataatagtgtaaaacc |
8662567 |
T |
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