View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21398_high_1 (Length: 884)

Name: NF21398_high_1
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21398_high_1
NF21398_high_1
[»] chr5 (16 HSPs)
chr5 (556-684)||(43554512-43554633)
chr5 (560-629)||(39695995-39696064)
chr5 (584-692)||(36577616-36577717)
chr5 (656-695)||(6247689-6247728)
chr5 (632-694)||(7997108-7997171)
chr5 (649-708)||(38464301-38464361)
chr5 (625-695)||(21576686-21576756)
chr5 (649-695)||(17123119-17123165)
chr5 (632-695)||(2419921-2419985)
chr5 (574-673)||(21137697-21137789)
chr5 (642-692)||(30183624-30183675)
chr5 (648-695)||(39695952-39695999)
chr5 (625-695)||(43564929-43564999)
chr5 (661-695)||(2548464-2548498)
chr5 (661-695)||(14674333-14674367)
chr5 (572-630)||(25863210-25863268)
[»] chr2 (20 HSPs)
chr2 (566-695)||(23354582-23354711)
chr2 (566-694)||(23354926-23355054)
chr2 (560-695)||(25544475-25544611)
chr2 (596-695)||(11307935-11308033)
chr2 (561-695)||(38919201-38919335)
chr2 (573-629)||(24011043-24011099)
chr2 (625-695)||(37419802-37419872)
chr2 (632-695)||(18889520-18889584)
chr2 (625-692)||(37411188-37411255)
chr2 (649-695)||(18840954-18841001)
chr2 (648-695)||(25072754-25072801)
chr2 (625-695)||(28596517-28596587)
chr2 (625-694)||(2438661-2438730)
chr2 (661-695)||(18420364-18420398)
chr2 (564-630)||(19573976-19574042)
chr2 (642-695)||(26769586-26769640)
chr2 (564-630)||(37986777-37986843)
chr2 (566-611)||(22085004-22085049)
chr2 (573-658)||(30563416-30563501)
chr2 (648-696)||(44860401-44860450)
[»] chr8 (20 HSPs)
chr8 (552-695)||(13009423-13009566)
chr8 (572-695)||(39820435-39820546)
chr8 (561-654)||(13845229-13845322)
chr8 (564-694)||(44067514-44067644)
chr8 (556-695)||(40063941-40064080)
chr8 (625-695)||(29510234-29510304)
chr8 (634-695)||(38487158-38487220)
chr8 (624-695)||(14513109-14513181)
chr8 (632-695)||(36450695-36450758)
chr8 (556-697)||(2035729-2035868)
chr8 (634-692)||(12559044-12559103)
chr8 (633-695)||(30067969-30068032)
chr8 (596-695)||(15816059-15816158)
chr8 (658-695)||(16641910-16641947)
chr8 (619-695)||(33389296-33389372)
chr8 (596-695)||(3911140-3911240)
chr8 (573-625)||(35431140-35431192)
chr8 (642-695)||(8343391-8343445)
chr8 (575-641)||(16869699-16869765)
chr8 (658-695)||(25566911-25566948)
[»] chr4 (17 HSPs)
chr4 (560-695)||(3144588-3144717)
chr4 (564-692)||(20743210-20743339)
chr4 (577-695)||(17876166-17876284)
chr4 (565-695)||(31243477-31243608)
chr4 (566-684)||(6273944-6274062)
chr4 (564-695)||(53381531-53381653)
chr4 (596-695)||(944603-944697)
chr4 (564-695)||(7012064-7012196)
chr4 (564-695)||(24343505-24343631)
chr4 (619-701)||(3947696-3947777)
chr4 (625-695)||(23292927-23292997)
chr4 (563-684)||(32910548-32910670)
chr4 (632-695)||(18513176-18513240)
chr4 (586-630)||(23386166-23386210)
chr4 (633-695)||(35161092-35161154)
chr4 (642-695)||(19482743-19482797)
chr4 (658-700)||(40784034-40784076)
[»] chr7 (19 HSPs)
chr7 (556-695)||(29812599-29812733)
chr7 (573-695)||(23751907-23752017)
chr7 (561-695)||(7133213-7133342)
chr7 (564-691)||(43249991-43250118)
chr7 (564-695)||(4017730-4017855)
chr7 (619-695)||(5409772-5409847)
chr7 (564-695)||(38804490-38804616)
chr7 (625-695)||(598256-598326)
chr7 (648-695)||(32287404-32287452)
chr7 (625-695)||(21864856-21864926)
chr7 (625-695)||(21880200-21880270)
chr7 (573-631)||(17780078-17780136)
chr7 (620-695)||(32093955-32094030)
chr7 (632-684)||(12278889-12278942)
chr7 (560-658)||(22683720-22683820)
chr7 (577-630)||(23930230-23930283)
chr7 (647-695)||(40131940-40131989)
chr7 (627-695)||(41229238-41229307)
chr7 (659-696)||(49107887-49107924)
[»] chr3 (25 HSPs)
chr3 (573-695)||(52369782-52369905)
chr3 (547-695)||(25074768-25074913)
chr3 (564-691)||(14223793-14223914)
chr3 (564-630)||(25892458-25892524)
chr3 (567-695)||(27903633-27903756)
chr3 (564-695)||(8903430-8903553)
chr3 (637-695)||(21211353-21211412)
chr3 (564-695)||(15864831-15864950)
chr3 (548-622)||(34189409-34189483)
chr3 (632-695)||(14216958-14217021)
chr3 (632-695)||(14223087-14223150)
chr3 (625-695)||(41961580-41961650)
chr3 (626-696)||(21149116-21149186)
chr3 (561-658)||(25326421-25326512)
chr3 (660-693)||(21367349-21367382)
chr3 (658-695)||(49651717-49651754)
chr3 (564-620)||(1830341-1830397)
chr3 (625-695)||(14209172-14209242)
chr3 (632-694)||(24204983-24205046)
chr3 (625-695)||(55401123-55401193)
chr3 (569-623)||(3730167-3730221)
chr3 (626-695)||(37077418-37077488)
chr3 (573-630)||(12704652-12704709)
chr3 (647-695)||(17276796-17276845)
chr3 (619-695)||(27505294-27505369)
[»] chr6 (22 HSPs)
chr6 (573-695)||(34446572-34446689)
chr6 (564-628)||(6389741-6389805)
chr6 (573-630)||(17168458-17168515)
chr6 (575-674)||(2153838-2153937)
chr6 (573-695)||(26247433-26247549)
chr6 (651-695)||(6389806-6389850)
chr6 (548-695)||(34894969-34895111)
chr6 (625-695)||(34595182-34595252)
chr6 (625-695)||(4877991-4878060)
chr6 (573-635)||(19602171-19602233)
chr6 (564-695)||(9107300-9107431)
chr6 (648-696)||(31959220-31959269)
chr6 (658-695)||(32839572-32839609)
chr6 (625-695)||(1191644-1191711)
chr6 (647-693)||(9025448-9025495)
chr6 (48-111)||(9943666-9943728)
chr6 (648-693)||(8389411-8389457)
chr6 (642-695)||(8776909-8776963)
chr6 (659-697)||(27903961-27903999)
chr6 (560-625)||(13689193-13689258)
chr6 (619-695)||(17327591-17327666)
chr6 (556-629)||(30781290-30781363)
[»] scaffold0652 (1 HSPs)
scaffold0652 (625-696)||(402-473)
[»] chr1 (18 HSPs)
chr1 (573-695)||(42004883-42004999)
chr1 (619-694)||(1486646-1486720)
chr1 (560-628)||(39101179-39101247)
chr1 (558-624)||(6573981-6574047)
chr1 (619-695)||(20157285-20157361)
chr1 (647-695)||(34741916-34741964)
chr1 (625-695)||(18190049-18190119)
chr1 (641-695)||(18556386-18556441)
chr1 (560-607)||(23440004-23440051)
chr1 (625-695)||(32899938-32900009)
chr1 (625-695)||(37598879-37598949)
chr1 (625-694)||(42359391-42359460)
chr1 (573-630)||(6936395-6936452)
chr1 (647-695)||(19562557-19562605)
chr1 (647-691)||(23219608-23219653)
chr1 (662-699)||(23705417-23705454)
chr1 (658-695)||(42325640-42325677)
chr1 (564-695)||(47989496-47989626)
[»] scaffold0003 (2 HSPs)
scaffold0003 (596-695)||(241624-241723)
scaffold0003 (646-695)||(236915-236965)
[»] scaffold0049 (1 HSPs)
scaffold0049 (576-695)||(56932-57052)
[»] scaffold0499 (1 HSPs)
scaffold0499 (18-50)||(2847-2879)
[»] scaffold0168 (1 HSPs)
scaffold0168 (661-695)||(21372-21406)
[»] scaffold0128 (1 HSPs)
scaffold0128 (648-697)||(32774-32824)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 556 - 684
Target Start/End: Original strand, 43554512 - 43554633
Alignment:
Q  556 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 655  Q
    ||||||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  43554512 cacggacac-gacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc------ggacaccgacgcgtgtccga 43554604  T
Q  656 cacgggacacacctaatccgagaagtgtc 684  Q
    |||||||||| ||||||||||||||||||    
T  43554605 cacgggacacgcctaatccgagaagtgtc 43554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 560 - 629
Target Start/End: Complemental strand, 39696064 - 39695995
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 629  Q
    |||||||||||  | |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  39696064 gacaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 39695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 584 - 692
Target Start/End: Complemental strand, 36577717 - 36577616
Alignment:
Q  584 agaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgt 683  Q
    ||||||||||  |||||||| |||| ||| ||||||||||||||||||       |||||| |||| |||||||||||| || |||||||| ||||||||    
T  36577717 agaaaatgatataatttagtataattatatgtgtcgtgtcggtgtcga-------caccgatgcgtatccgacacgggatacgcctaatccaagaagtgt 36577625  T
Q  684 ctgtgcttc 692  Q
    |||||||||    
T  36577624 ctgtgcttc 36577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 695
Target Start/End: Original strand, 6247689 - 6247728
Alignment:
Q  656 cacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6247689 cacgggacacacctaatccgagaagtgtctgtgcttcata 6247728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 632 - 694
Target Start/End: Complemental strand, 7997171 - 7997108
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||||||||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||    
T  7997171 tgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaagtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 708
Target Start/End: Complemental strand, 38464361 - 38464301
Alignment:
Q  649 tgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataagatatctccttt 708  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcataggttgtctccttt 38464301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 21576756 - 21576686
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  21576756 gtgtcgatgtcggacac-gacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcata 21576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 695
Target Start/End: Original strand, 17123119 - 17123165
Alignment:
Q  649 tgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  17123119 tgtccgacacgggacacgcctaatccgaggagtgtccgtgcttcata 17123165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 2419921 - 2419985
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||| ||||||||||| | ||||||||||||||||||  |||||| ||||||||||    
T  2419921 tgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcata 2419985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 673
Target Start/End: Original strand, 21137697 - 21137789
Alignment:
Q  574 taataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaat 672  Q
    ||||||| | |||||||||   |||| |||| |||||||||||||||||||||        |||||||| |||||||||||||| |||||||||||||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggt--------cggacaccaacgcgtgtccgacaccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 692
Target Start/End: Original strand, 30183624 - 30183675
Alignment:
Q  642 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttc 692  Q
    |||| |||||||||||| ||||||| |||||| |||||||||||||||||||    
T  30183624 cgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 39695999 - 39695952
Alignment:
Q  648 gtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||||| |||||||| || |||||| ||||||||||    
T  39695999 gtgtccgacacgggacacgcctaatcctaggagtgtcggtgcttcata 39695952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 43564929 - 43564999
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| |||  ||||||||| | ||||||| |||||||||||||||||| ||||||||||    
T  43564929 gtgtcggtgtcggacac-gacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcata 43564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 695
Target Start/End: Original strand, 2548464 - 2548498
Alignment:
Q  661 gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||| |||||||||||||||||    
T  2548464 gacacacctaatccgaggagtgtctgtgcttcata 2548498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 695
Target Start/End: Original strand, 14674333 - 14674367
Alignment:
Q  661 gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||| |||||||||||||||||    
T  14674333 gacacacctaatccgaggagtgtctgtgcttcata 14674367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 572 - 630
Target Start/End: Original strand, 25863210 - 25863268
Alignment:
Q  572 tataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    ||||||||||| ||||||||||  |||| |||||||| ||| |||||||||| ||||||    
T  25863210 tataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcg 25863268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 7e-36; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 566 - 695
Target Start/End: Complemental strand, 23354711 - 23354582
Alignment:
Q  566 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 665  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||||||  ||||| ||||||||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggggtcggacaccgaccggtgtctgacacgggacac 23354612  T
Q  666 acctaatccgagaagtgtctgtgcttcata 695  Q
     ||||||||||| |||||| ||| ||||||    
T  23354611 gcctaatccgaggagtgtccgtggttcata 23354582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 566 - 694
Target Start/End: Complemental strand, 23355054 - 23354926
Alignment:
Q  566 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 665  Q
    |||||| |||||||||| ||||||||||  ||||||||| ||||||||||||| |||||||||||  || |||||||||| |||||| ||||||||||||    
T  23355054 gacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgacccgtgtctgacacgggacac 23354955  T
Q  666 acctaatccgagaagtgtctgtgcttcat 694  Q
     ||||||||||| ||||||  ||||||||    
T  23354954 gcctaatccgaggagtgtccttgcttcat 23354926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 560 - 695
Target Start/End: Original strand, 25544475 - 25544611
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg 659  Q
    ||||||||||| ||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||  |||| |||||| ||| |||||||||| |    
T  25544475 gacaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcagtgtcagacaccaacgtgtgtccgacatg 25544574  T
Q  660 g-gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |  ||||||||||||| | ||||||| ||| ||||||    
T  25544575 gatacacacctaatccaaaaagtgtccgtggttcata 25544611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 596 - 695
Target Start/End: Complemental strand, 11308033 - 11307935
Alignment:
Q  596 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  || |||| ||||||||| |||||| ||||||||||    
T  11308033 aattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacac-cgaaacacttaatccgaggagtgtccgtgcttcata 11307935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 561 - 695
Target Start/End: Original strand, 38919201 - 38919335
Alignment:
Q  561 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgg 660  Q
    ||||||| ||| |||||||||| |||||||| |  | |||||||||||||||||||||||||  |||||| ||||||| || || ||||||||||||| |    
T  38919201 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgatgcgtgtccgacacag 38919300  T
Q  661 gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||  |||||| ||  ||||| |||||||||||    
T  38919301 gacacgtctaatctgaagagtgtttgtgcttcata 38919335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 629
Target Start/End: Original strand, 24011043 - 24011099
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 629  Q
    |||||||||| |||||||||   |||||||||||||||||||||||| |||||||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtc 24011099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 37419802 - 37419872
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| || ||||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  37419802 gtgtcggtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 695
Target Start/End: Complemental strand, 18889584 - 18889520
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||| ||||||||| | |||||||||||| || || ||||||| |||||||||    
T  18889584 tgtcggacaccgacgcatgtccgacacccggacacacctaacccaagtagtgtctctgcttcata 18889520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 692
Target Start/End: Complemental strand, 37411255 - 37411188
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttc 692  Q
    |||||||||||| |||| |||||||||||||||| ||||||| |||| |||||| |||| |||||||||    
T  37411255 gtgtcgatgtcgaacac-gacgcgtgtccgacactgggacacgcctagtccgaggagtgcctgtgcttc 37411188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 18841001 - 18840954
Alignment:
Q  649 tgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  18841001 tgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 18840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 25072754 - 25072801
Alignment:
Q  648 gtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| || |||||||||||||||| || |||||||||||||||||||    
T  25072754 gtgtcggatacgggacacacctaatgcgtgaagtgtctgtgcttcata 25072801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 28596517 - 28596587
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| ||||||||||||  |||||| ||||||||||| |||||| ||||||||||    
T  28596517 gtgtcggtgtcggacac-gacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||||| |||||||||| ||| | |||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  2438730 gtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 695
Target Start/End: Complemental strand, 18420398 - 18420364
Alignment:
Q  661 gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| |||||||||||||||||||||||||||||    
T  18420398 gacacgcctaatccgagaagtgtctgtgcttcata 18420364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 19573976 - 19574042
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||||  |||||||||||||||||| |   |||| |||||||| ||||||| |||||||||||||    
T  19573976 ccgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcg 19574042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 695
Target Start/End: Original strand, 26769586 - 26769640
Alignment:
Q  642 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  26769586 cgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 37986777 - 37986843
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||||| |||||||||| | ||||||||  | || ||||||||||||||| |||||| |||||||    
T  37986777 ccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 37986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 611
Target Start/End: Original strand, 22085004 - 22085049
Alignment:
Q  566 gacacatataataatttaagaaaatgattaaatttagtgtaatcat 611  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||    
T  22085004 gacacgtataataatttaagaaaatgacataatttagtgtaatcat 22085049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 658
Target Start/End: Original strand, 30563416 - 30563501
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac 658  Q
    |||||||||| |||||||||   |||| | |||||  |||||||| |||||||||||  ||||||||||| | |||| ||||||||    
T  30563416 ataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcagtgtcggacacccaggcgtatccgacac 30563501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 696
Target Start/End: Original strand, 44860401 - 44860450
Alignment:
Q  648 gtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcataa 696  Q
    |||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  44860401 gtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcataa 44860450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 552 - 695
Target Start/End: Complemental strand, 13009566 - 13009423
Alignment:
Q  552 gaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgt 651  Q
    |||||||||||||||||||  |||||||||| ||||||  ||  ||||||||||||||||| ||||||||||||||| | |||| ||||||||||| |||    
T  13009566 gaagcacggacaccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgt 13009467  T
Q  652 ccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||| |||||||| || || ||| ||||||||||    
T  13009466 ccgacacgggacacgcctaatccaaggagcgtccgtgcttcata 13009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 572 - 695
Target Start/End: Original strand, 39820435 - 39820546
Alignment:
Q  572 tataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaa 671  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||| |||||    
T  39820435 tataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtc------------ggacaccgacgcgtgtccgacacgggacacgcctaa 39820522  T
Q  672 tccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||| ||||||||||    
T  39820523 tccgagaagtgtccgtgcttcata 39820546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 561 - 654
Target Start/End: Original strand, 13845229 - 13845322
Alignment:
Q  561 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccg 654  Q
    ||||||||||| |||||||||| ||||||||||  ||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  13845229 acaccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacactgacgcgtgtccg 13845322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 44067514 - 44067644
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 662  Q
    |||||||  |||||||||| |||||||||   |||  |||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||| | |||    
T  44067514 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg-tgtcggacactgatgcgtgtccgacaccagga 44067612  T
Q  663 cacacctaatccgagaagtgtctgtgcttcat 694  Q
    ||| |||||| |||| |||||| |||||||||    
T  44067613 cacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 556 - 695
Target Start/End: Original strand, 40063941 - 40064080
Alignment:
Q  556 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 655  Q
    |||||||||||||||  |||||||||| |||||||||   |||| | |||||||||||| |||||||||||||| |   | | | |||||| ||||||||    
T  40063941 cacggacaccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtccaacac-gtcgccgacgtgtgtccga 40064039  T
Q  656 ca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    || ||||||||| |||||||||| |||||| ||||| ||||    
T  40064040 caccgggacacatctaatccgaggagtgtccgtgctacata 40064080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 29510304 - 29510234
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  29510304 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 29510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 634 - 695
Target Start/End: Complemental strand, 38487220 - 38487158
Alignment:
Q  634 tcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||    
T  38487220 tcggacaccgacgcgtgtccgacacccggacacacataatccgaggagtgtctgtgcttcata 38487158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 695
Target Start/End: Complemental strand, 14513181 - 14513109
Alignment:
Q  624 ggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||| |||| ||||||||||| ||||||||| ||| ||||||||||||| |||| |||||||| ||||||    
T  14513181 ggtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatccaagaattgtctgtgattcata 14513109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 695
Target Start/End: Complemental strand, 36450758 - 36450695
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||    
T  36450758 tgtcggacac-gacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 697
Target Start/End: Original strand, 2035729 - 2035868
Alignment:
Q  556 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 655  Q
    |||| ||||||||||  |||| |||||| |||||| |    ||| |||||||| ||||||||||| ||| || || |||| |||  ||||||||||||||    
T  2035729 cacgaacaccgacaccgataacaatttaggaaaataacattattcagtgtaattataggtgtcgtatcg-tgccggtgtcagac--cgacgcgtgtccga 2035825  T
Q  656 cac-gggacacacctaatccgagaagtgtctgtgcttcataag 697  Q
    ||| |||| |||||||||||||| || ||| ||||||||||||    
T  2035826 caccgggagacacctaatccgagtagcgtccgtgcttcataag 2035868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 634 - 692
Target Start/End: Complemental strand, 12559103 - 12559044
Alignment:
Q  634 tcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttc 692  Q
    |||||||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  12559103 tcggacaccgacacgtgtccgacaacgggacacatctaatcccaggagtgtctgtgcttc 12559044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 30068032 - 30067969
Alignment:
Q  633 gtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||||  |||||| ||||||||||    
T  30068032 gtcggataccgacgtgtgtccgacactgggacacacctaatccgatgagtgtccgtgcttcata 30067969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 695
Target Start/End: Complemental strand, 15816158 - 15816059
Alignment:
Q  596 aatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 693  Q
    ||||||||||||| ||| |||||| ||||| ||| | |||||||||| ||| ||  |||||||| ||||||| |||||||||||||||||| ||||||||    
T  15816158 aatttagtgtaattataagtgtcggtgtcg-tgttggtgtcggacac-gacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 15816061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 695
Target Start/End: Complemental strand, 16641947 - 16641910
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16641947 cgggacacacctaatccgaggagtgtctgtgcttcata 16641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 33389372 - 33389296
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| ||||||| ||||| |||||||  |||||||||||| |||| ||||||||||| ||||||||| ||||||||||    
T  33389372 gtgttggtgtcg-tgtcgaacaccgatacgtgtccgacactgggatacacctaatccaagaagtgtcggtgcttcata 33389296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 596 - 695
Target Start/End: Original strand, 3911140 - 3911240
Alignment:
Q  596 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||| |||| ||||||| ||||||||| ||||||| | |||||||||||||| ||||||| ||   ||||| |||||||  | |||||| ||||||||||    
T  3911140 aattcagtgaaatcataagtgtcgtgttggtgtcggtatcggacaccgacgcatgtccgatactcagacactcctaatctaaaaagtgtatgtgcttcat 3911239  T
Q  695 a 695  Q
    |    
T  3911240 a 3911240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 625
Target Start/End: Complemental strand, 35431192 - 35431140
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 625  Q
    |||||||||| |||||||||   | ||||||||||||||||||||||||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 695
Target Start/End: Original strand, 8343391 - 8343445
Alignment:
Q  642 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  8343391 cgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 641
Target Start/End: Complemental strand, 16869765 - 16869699
Alignment:
Q  575 aataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacac 641  Q
    ||||||||||||||||||   |||| | | ||||||| |||||||||| ||||||| ||||||||||    
T  16869765 aataatttaagaaaatgacataattcactataatcattggtgtcgtgttggtgtcggtgtcggacac 16869699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 695
Target Start/End: Original strand, 25566911 - 25566948
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  25566911 cgggacacgcctaatccgaggagtgtctgtgcttcata 25566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 560 - 695
Target Start/End: Complemental strand, 3144717 - 3144588
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg 659  Q
    |||||| ||||  |||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||       |||||| |||||||||| |||||    
T  3144717 gacacctacacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtca------gacaccaacgcgtgtccaacacg 3144624  T
Q  660 ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
     |||||||||||||||||||||||| ||||||||||    
T  3144623 agacacacctaatccgagaagtgtccgtgcttcata 3144588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 564 - 692
Target Start/End: Complemental strand, 20743339 - 20743210
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 662  Q
    |||||||  |||||||||| |||||||||   |||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||| |    
T  20743339 ccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgacaccggaa 20743240  T
Q  663 cacacctaatccgagaagtgtctgtgcttc 692  Q
    |||| |||||||||  |||||| |||||||    
T  20743239 cacatctaatccgatgagtgtccgtgcttc 20743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 577 - 695
Target Start/End: Original strand, 17876166 - 17876284
Alignment:
Q  577 taatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccg 675  Q
    |||||| |||||||||   ||||||||||||||||| ||| |||||| |||||| |||| ||||||||||| ||||||||||  |||||||||||||||     
T  17876166 taattttagaaaatgacataatttagtgtaatcatatgtgccgtgtcagtgtcg-tgtcagacaccgacgcttgtccgacaccaggacacacctaatcca 17876264  T
Q  676 agaagtgtctgtgcttcata 695  Q
    || |||||||||||||||||    
T  17876265 aggagtgtctgtgcttcata 17876284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 565 - 695
Target Start/End: Complemental strand, 31243608 - 31243477
Alignment:
Q  565 cgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggac 663  Q
    |||||| ||||||||||| |||||||||   |||| |||||||||||||||||| ||||||||| | ||||||||||||| |||||| ||||| | ||||    
T  31243608 cgacacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggac 31243509  T
Q  664 acacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||  ||| ||||| |||| ||||||    
T  31243508 acacctaatatgaggagtgtttgtggttcata 31243477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 566 - 684
Target Start/End: Original strand, 6273944 - 6274062
Alignment:
Q  566 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 665  Q
    |||||| | |||||||| ||||||||||  ||||||||||||| ||||  ||||||||||||||| |||| |||| |||||| ||||||||||  |||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccgacacaagacac 6274043  T
Q  666 acctaatccgagaagtgtc 684  Q
     ||||||  ||||||||||    
T  6274044 gcctaatatgagaagtgtc 6274062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 564 - 695
Target Start/End: Complemental strand, 53381653 - 53381531
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggga 662  Q
    |||||||  ||||||||||||||||||||    ||| |||||||| ||||| |||||||||||||||      ||||| ||||||| |||||||| ||||    
T  53381653 ccgacaccgataataatttaagaaaatga----attcagtgtaattataggcgtcgtgtcggtgtcg------gacactgacgcgtatccgacaccggga 53381564  T
Q  663 cacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||| |||||| ||||||||||    
T  53381563 cacacctaatccgaggagtgtccgtgcttcata 53381531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 596 - 695
Target Start/End: Complemental strand, 944697 - 944603
Alignment:
Q  596 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    ||||||||||||| |||||||||||||| |||||||      |||| |||||||||||||||| ||||||||||||||| ||| ||| |||| |||||||    
T  944697 aatttagtgtaattataggtgtcgtgtcagtgtcga------acacagacgcgtgtccgacaccgggacacacctaatctgaggagtctctgagcttcat 944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 7012064 - 7012196
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 661  Q
    |||||||  |||||||||| |||||||||   |||| ||||| ||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||| ||||    
T  7012064 ccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttg-tgtcggtgtcggacaccgacgcgtatccgacaccggg 7012162  T
Q  662 acacacctaatccgagaagtgtctgtgcttcata 695  Q
      ||||||||| |||| |||||| ||||||||||    
T  7012163 gaacacctaatgcgaggagtgtccgtgcttcata 7012196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 24343505 - 24343631
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 662  Q
    |||||||  |||||||||| ||||||| |   |||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||| |||||    
T  24343505 ccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtcc------gacaccgacgcgtgtccgacaccggga 24343598  T
Q  663 cacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||| |||| || ||| |||||| ||||||||||    
T  24343599 cacgcctattctgaggagtgtccgtgcttcata 24343631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 619 - 701
Target Start/End: Complemental strand, 3947777 - 3947696
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcataagatat 701  Q
    ||||| |||||| |||||||||| ||| ||||||||||||  |||||||||||||||||| |||||| ||||||||||| ||||    
T  3947777 gtgtcagtgtcg-tgtcggacac-gacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcataatatat 3947696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 23292997 - 23292927
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  23292997 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 684
Target Start/End: Original strand, 32910548 - 32910670
Alignment:
Q  563 accgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 661  Q
    ||||||||  |||||||||| |||||||||   |||| |||||||| || |||||  ||||||| ||| | | |||||| ||||||||||||||| |  |    
T  32910548 accgacacggataataatttgagaaaatgacataattcagtgtaattatgggtgttatgtcggtatcggtattggacactgacgcgtgtccgacaccatg 32910647  T
Q  662 acacacctaatccgagaagtgtc 684  Q
    |||| ||||||||||| ||||||    
T  32910648 acacgcctaatccgaggagtgtc 32910670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 695
Target Start/End: Complemental strand, 18513240 - 18513176
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||| |||||||||| | |||||| ||||||| ||| |||||| ||||||||||    
T  18513240 tgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 630
Target Start/End: Original strand, 23386166 - 23386210
Alignment:
Q  586 aaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcg 23386210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 695
Target Start/End: Original strand, 35161092 - 35161154
Alignment:
Q  633 gtcggacaccgacgcgtgtccgacacggga-cacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||| ||| |||||||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  35161092 gtcggacac-gacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcata 35161154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 695
Target Start/End: Original strand, 19482743 - 19482797
Alignment:
Q  642 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  19482743 cgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 19482797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 658 - 700
Target Start/End: Original strand, 40784034 - 40784076
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcataagata 700  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  40784034 cgggacacacctaatccgaggagtgtccgtgcttcataggata 40784076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 556 - 695
Target Start/End: Complemental strand, 29812733 - 29812599
Alignment:
Q  556 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 655  Q
    ||||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||   | |||      ||||    
T  29812733 cacggacaccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggtgtcggtgtcggac-----accga 29812639  T
Q  656 cacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  29812638 cacgggacacgcctaatccgagaagtgtccgtgcttcata 29812599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 573 - 695
Target Start/End: Original strand, 23751907 - 23752017
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 672  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtc------------ggacaccgacgcgtgtcagacacgggacacgcctaat 23751994  T
Q  673 ccgagaagtgtctgtgcttcata 695  Q
    |||| ||||||||||||||||||    
T  23751995 ccgataagtgtctgtgcttcata 23752017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 561 - 695
Target Start/End: Complemental strand, 7133342 - 7133213
Alignment:
Q  561 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-g 659  Q
    ||||||||||| || ||||||| |||||||||   |||| ||||||||||||||||  ||||||||||||      |||||||||||||||||||||| |    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcg------gacaccgacgcgtgtccgacactg 7133249  T
Q  660 ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||| ||| || ||| ||||||||||    
T  7133248 ggacacacctaatctgaggagcgtccgtgcttcata 7133213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 564 - 691
Target Start/End: Original strand, 43249991 - 43250118
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 662  Q
    |||||||  |||||||||| |||||||||   |||  |||||||| ||| |||||||||||||||||  ||||||||| ||||||||||||||| | |||    
T  43249991 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg-cgtcggacactgacgcgtgtccgacaccagga 43250089  T
Q  663 cacacctaatccgagaagtgtctgtgctt 691  Q
    ||| |||||| |||| |||||| ||||||    
T  43250090 cacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 564 - 695
Target Start/End: Complemental strand, 4017855 - 4017730
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 663  Q
    |||||||  |||||||||| |||||| |||  ||||||||||||||||| ||||||||| ||      ||||||||||||||| ||||| ||||||| ||    
T  4017855 ccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttgg------tgtcggacaccgacgtgtgtctgacacggaac 4017762  T
Q  664 acacctaatccgagaagtgtctgtgcttcata 695  Q
    || |||||||  | ||||||  ||||||||||    
T  4017761 acgcctaatctaaaaagtgttcgtgcttcata 4017730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 5409847 - 5409772
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  5409847 gtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 695
Target Start/End: Complemental strand, 38804616 - 38804490
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggga 662  Q
    |||||||  |||||||||| |||||||||   |||  || ||||||||||||||||||| |||||||      |||||||||| ||||||||| | ||||    
T  38804616 ccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcg------gacaccgacgtgtgtccgacgccggga 38804523  T
Q  663 cacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||  ||||||||||| ||||| |||||||||||    
T  38804522 catgcctaatccgaggagtgtatgtgcttcata 38804490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 598256 - 598326
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||| ||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  598256 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 695
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  648 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 21864856 - 21864926
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| |||||||||||| |||||||  ||||| |||| |||||||||||||||||    
T  21864856 gtgtcgctgtcggacac-gacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcata 21864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 21880200 - 21880270
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| | ||||||||||  |||||| |||||||||||||||||| ||||||||||    
T  21880200 gtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 573 - 631
Target Start/End: Complemental strand, 17780136 - 17780078
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcga 631  Q
    ||||||||||||||||||||   ||||   |||||| ||||||||||||||||||||||    
T  17780136 ataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtcga 17780078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 620 - 695
Target Start/End: Complemental strand, 32094030 - 32093955
Alignment:
Q  620 tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac--gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||| |||||||||| ||| ||||||||||||  ||||||| ||||||||||| |||||  ||||||||||    
T  32094030 tgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcata 32093955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 684
Target Start/End: Original strand, 12278889 - 12278942
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtc 684  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||| || ||||||    
T  12278889 tgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtgtc 12278942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 22683820 - 22683720
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtc--gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca 657  Q
    |||||||| ||  |||||||||| |||| |||||  |||| |||| |||||||||||||  ||||| |||||  ||||||||| ||||| ||||| ||||    
T  22683820 gacaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcagtgtcggacatcgacgggtgtctgaca 22683721  T
Q  658 c 658  Q
    |    
T  22683720 c 22683720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 23930230 - 23930283
Alignment:
Q  577 taatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||| |||||||||   |||| ||||||||||||||||| ||||||||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcg 23930283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 695
Target Start/End: Complemental strand, 40131989 - 40131940
Alignment:
Q  647 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| |||||||  |||||||||| |||||||||||||||||    
T  40131989 cgtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcata 40131940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 695
Target Start/End: Complemental strand, 41229307 - 41229238
Alignment:
Q  627 gtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| ||||||||||| ||||||||||| ||| | ||||| ||||||  |||||||||| ||||||||||    
T  41229307 gtcggtgtcggacaccaacgcgtgtccgtcactgcgacacgcctaatatgagaagtgtccgtgcttcata 41229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 696
Target Start/End: Original strand, 49107887 - 49107924
Alignment:
Q  659 gggacacacctaatccgagaagtgtctgtgcttcataa 696  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  49107887 gggacatacctaatccgaggagtgtctgtgcttcataa 49107924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 573 - 695
Target Start/End: Original strand, 52369782 - 52369905
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaa 671  Q
    |||||||||| ||||||| |   |||| | |||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||     
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggacacacctat 52369881  T
Q  672 tccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||| ||||||||||    
T  52369882 tccgaggagtgtccgtgcttcata 52369905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 547 - 695
Target Start/End: Original strand, 25074768 - 25074913
Alignment:
Q  547 cctatgaagcacggacac--cgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccga 644  Q
    ||||||||||||||||||  ||||||  |||||||||| |||||||||   |||| |||||||||||||| || |||||||||||       |||||| |    
T  25074768 cctatgaagcacggacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtct------gacaccaa 25074861  T
Q  645 cgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  25074862 cgcgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 25074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 564 - 691
Target Start/End: Complemental strand, 14223914 - 14223793
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 663  Q
    |||||||| |||||||||| |||||| |||  ||||||||||| ||||| ||||||||||||      |||| ||||||||| ||||||||||| |||||    
T  14223914 ccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg------tgtccgacaccgacacgtgtccgacatgggac 14223821  T
Q  664 acacctaatccgagaagtgtctgtgctt 691  Q
    || ||||||| ||| ||| |||||||||    
T  14223820 acgcctaatctgaggagtttctgtgctt 14223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 25892458 - 25892524
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||| ||| |||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||    
T  25892458 ccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcg 25892524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 567 - 695
Target Start/End: Original strand, 27903633 - 27903756
Alignment:
Q  567 acacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacggga-cac 665  Q
    ||||| |||||||||| |||||| |||  |||||| |||||||||| |||| ||||||||||||      || ||||||||||||| ||||| ||| ||     
T  27903633 acacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcg------gataccgacgcgtgtctgacactggatcat 27903726  T
Q  666 acctaatccgagaagtgtctgtgcttcata 695  Q
     |||||||||||||||||| ||||||||||    
T  27903727 gcctaatccgagaagtgtccgtgcttcata 27903756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 8903430 - 8903553
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 663  Q
    |||||||  |||||| ||| |||||||||  | |||||||||||| |||||||||||||||      ||| |||||||| | ||||||||||| ||||||    
T  8903430 ccgacacggataatattttgagaaaatgac-atatttagtgtaattataggtgtcgtgtcg------atgccggacacctatgcgtgtccgac-cgggac 8903521  T
Q  664 acacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||| |||||  ||||||||||    
T  8903522 acacctaatccgaggagtgttcgtgcttcata 8903553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 637 - 695
Target Start/End: Original strand, 21211353 - 21211412
Alignment:
Q  637 gacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  21211353 gacaccgacgcgtgtccgacactgggacactcctaatccgaggagtgtttgtgcttcata 21211412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 15864831 - 15864950
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 663  Q
    |||||||  |||||||||| | ||||||||  ||||||||||||||||||||||||            |||||||||||||| |||||| ||||||||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcg------------tgtcggacaccgacacgtgtctgacacgggac 15864918  T
Q  664 acacctaatccgagaagtgtctgtgcttcata 695  Q
    || |||||||| |  |||||| ||||||||||    
T  15864919 acgcctaatccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 622
Target Start/End: Original strand, 34189409 - 34189483
Alignment:
Q  548 ctatgaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgt 622  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||   | || ||||||||| ||||||||||||    
T  34189409 ctatgaagcacggacatcgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 14216958 - 14217021
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  14216958 tgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 14223087 - 14223150
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  14223087 tgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 41961650 - 41961580
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| | |||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  41961650 gtgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 41961580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 696
Target Start/End: Original strand, 21149116 - 21149186
Alignment:
Q  626 tgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcataa 696  Q
    ||||| ||||||||||| ||| ||||| ||||| | |||||||||||||||| | |||||||| |||||||    
T  21149116 tgtcgttgtcggacaccaacgtgtgtctgacaccgaacacacctaatccgaggaatgtctgtgtttcataa 21149186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 658
Target Start/End: Original strand, 25326421 - 25326512
Alignment:
Q  561 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac 658  Q
    ||||| ||||| |||||||||||| ||||| ||  ||||||||||||| |||| |||||||| ||      |||||||||||||||||||| ||||||    
T  25326421 acaccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttgg------tgtcggacaccgacgcgtgttcgacac 25326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 693
Target Start/End: Original strand, 21367349 - 21367382
Alignment:
Q  660 ggacacacctaatccgagaagtgtctgtgcttca 693  Q
    ||||||||||||||||||||||||||||||||||    
T  21367349 ggacacacctaatccgagaagtgtctgtgcttca 21367382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 695
Target Start/End: Complemental strand, 49651754 - 49651717
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49651754 cgggacacacctaatccgagaagtgtccgtgcttcata 49651717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 620
Target Start/End: Original strand, 1830341 - 1830397
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgt 620  Q
    ||||||| | |||||||||||||||||||   |||| ||||||||||||||||||||    
T  1830341 ccgacacttttaataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 14209172 - 14209242
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  14209172 gtgtcggtgtcggacac-gacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcata 14209242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 694
Target Start/End: Complemental strand, 24205046 - 24204983
Alignment:
Q  632 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||||||||| ||||||||||||||| | |||||| |||||| |||| |||||| |||||||||    
T  24205046 tgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 55401123 - 55401193
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| |||||||||||| | ||||| ||||||||||| |||||| ||||||||||    
T  55401123 gtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 55401193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 3730221 - 3730167
Alignment:
Q  569 acatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtc 623  Q
    |||||||||||||| ||| |||||   |||| |||||||||||||||||||||||    
T  3730221 acatataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 626 - 695
Target Start/End: Original strand, 37077418 - 37077488
Alignment:
Q  626 tgtcgatgtcggacaccgacgcgtgtccgacacggg-acacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| ||||| |||| ||||| ||||||||||||| ||||||||||||| || | |||| ||||||||||    
T  37077418 tgtcggtgtcgtacacggacgcatgtccgacacggggacacacctaatccaaggaatgtccgtgcttcata 37077488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Complemental strand, 12704709 - 12704652
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcg 12704652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 695
Target Start/End: Original strand, 17276796 - 17276845
Alignment:
Q  647 cgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  17276796 cgtgtccgacaccgagacgcacctaatccgagaagtgtccgtgcttcata 17276845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 695
Target Start/End: Original strand, 27505294 - 27505369
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| |||| ||||| ||| |||||||||||| ||||||  ||||||||||| |||||| ||||||||||    
T  27505294 gtgtcggtgtcg-tgtctgacac-gacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 573 - 695
Target Start/End: Original strand, 34446572 - 34446689
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaa 671  Q
    |||||||||| |||||||||   |||| ||||||||||||||||||||||||||||| |      |||||||||||| || ||||| |||||||||||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcca------acaccgacgcgtatctgacactgggacacacctaa 34446665  T
Q  672 tccgagaagtgtctgtgcttcata 695  Q
    ||| || |||||| ||||||||||    
T  34446666 tccaaggagtgtccgtgcttcata 34446689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 564 - 628
Target Start/End: Original strand, 6389741 - 6389805
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgt 628  Q
    |||||||  |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  6389741 ccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 630
Target Start/End: Complemental strand, 17168515 - 17168458
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  17168515 ataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcg 17168458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 674
Target Start/End: Complemental strand, 2153937 - 2153838
Alignment:
Q  575 aataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatcc 674  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| || ||||| |||||| |||| | |  | | |||||||| |||||| ||||||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgtcgcgttggtgttgatgtcagacagcaatacatatccgacacaggacacgcctaatcc 2153838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 695
Target Start/End: Original strand, 26247433 - 26247549
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 672  Q
    ||||||||||||||||||||   | |||||| ||||||||||| |||||||||      ||||||||||| || |||||| ||||| | |||||||||||    
T  26247433 ataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcgg------tgtcggacaccaacacgtgtctgacaccgaacacacctaat 26247526  T
Q  673 ccgagaagtgtctgtgcttcata 695  Q
    | ||| |||||| ||| ||||||    
T  26247527 ctgaggagtgtccgtgtttcata 26247549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 6389806 - 6389850
Alignment:
Q  651 tccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  6389806 tccgacacgggacactcctaatccgagaagtgtccgtgcttcata 6389850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 695
Target Start/End: Complemental strand, 34895111 - 34894969
Alignment:
Q  548 ctatgaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgc 647  Q
    ||||||| |||||||||  |||| ||||||||||| ||||||| ||  |||| ||||||||||||||     |||| ||||| |||||||| ||  | ||    
T  34895111 ctatgaaacacggacacaaacacctataataatttgagaaaattatacaattcagtgtaatcatagg-----tgtcagtgtc-atgtcggaaactaatgc 34895018  T
Q  648 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
     |||||||||| ||||||||||||||  ||| |||||| ||||||||||    
T  34895017 ttgtccgacacagggacacacctaatatgaggagtgtccgtgcttcata 34894969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 34595182 - 34595252
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| |||||| ||||| ||||||||||||||||||| |||||| ||||||||||    
T  34595182 gtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcata 34595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 4877991 - 4878060
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| | |||||||||| |||||| ||||||||||| |||||| ||||||||||    
T  4877991 gtgtcggtgtcggacac-gacacatgtccgacacaggacacgcctaatccgaggagtgtccgtgcttcata 4878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 19602233 - 19602171
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtc 635  Q
    |||||||||| ||||||||||  |||| ||||||||||||||| | ||||||||||| |||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtccatgtc 19602171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 695
Target Start/End: Complemental strand, 9107431 - 9107300
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggg 661  Q
    ||||||||  ||||||||| | ||||| |  ||||| |||||||| | | |||||| ||||| ||||| ||||||||||  ||| ||||||||||| |||    
T  9107431 ccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcg-tgtcggtgtcggacaca-acgtgtgtccgacaccggg 9107334  T
Q  662 acacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||||||| |||| | ||||||||||    
T  9107333 acacacctaatccgaggagtgcccgtgcttcata 9107300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 696
Target Start/End: Original strand, 31959220 - 31959269
Alignment:
Q  648 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataa 696  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataa 31959269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 695
Target Start/End: Complemental strand, 32839609 - 32839572
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||| |||||||||||||||||||||||||||||    
T  32839609 cgggacacgcctaatccgagaagtgtctgtgcttcata 32839572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 1191711 - 1191644
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||| |||||| ||||||||||||||||   |||||||||||||||| |  ||||||||||||||    
T  1191711 gtgtcgatgttggacac-gacgcgtgtccgacacc--acacacctaatccgaggaccgtctgtgcttcata 1191644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 693
Target Start/End: Complemental strand, 9025495 - 9025448
Alignment:
Q  647 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 693  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  9025495 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 9943666 - 9943728
Alignment:
Q  48 attgaattaatcaaataaccgaattacacacaattttgattcaaaaggtaacatgttgatttga 111  Q
    |||||| || ||||||||||  |||||| |||||||||||||||||  ||||||||||||||||    
T  9943666 attgaactattcaaataaccctattacatacaattttgattcaaaa-ttaacatgttgatttga 9943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 693
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  648 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 693  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 695
Target Start/End: Complemental strand, 8776963 - 8776909
Alignment:
Q  642 cgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| |||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  8776963 cgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcata 8776909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 697
Target Start/End: Complemental strand, 27903999 - 27903961
Alignment:
Q  659 gggacacacctaatccgagaagtgtctgtgcttcataag 697  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  27903999 gggacacacctaatccgaggagtgtctgtgattcataag 27903961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 625
Target Start/End: Complemental strand, 13689258 - 13689193
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 625  Q
    |||||||||||| |||||||||| ||||||| |  || || | ||||||||||||| |||||||||    
T  13689258 gacaccgacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtcgg 13689193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 17327666 - 17327591
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| |||||| |||||||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  17327666 gtgtcagtgtcg-tgtcggacac-gacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcata 17327591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 629
Target Start/End: Complemental strand, 30781363 - 30781290
Alignment:
Q  556 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 629  Q
    |||| |||| ||||| | ||||||||| |||||||||   |||| | |||||||||||||||| ||||||||||    
T  30781363 cacgaacactgacacgtgtaataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgtc 30781290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 625 - 696
Target Start/End: Complemental strand, 473 - 402
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataa 696  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  473 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataa 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 695
Target Start/End: Complemental strand, 42004999 - 42004883
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 672  Q
    |||||||||| |||||||||   |||||||||||||||||||||| ||||||||      ||||||||||||||| ||||||||||   |||| ||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggt------gtcggacaccgacgcatgtccgacactaaacacgcctaat 42004906  T
Q  673 ccgagaagtgtctgtgcttcata 695  Q
     |||  |||||| ||||||||||    
T  42004905 tcgaagagtgtccgtgcttcata 42004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 619 - 694
Target Start/End: Complemental strand, 1486720 - 1486646
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  1486720 gtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 628
Target Start/End: Complemental strand, 39101247 - 39101179
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgt 628  Q
    ||||||||||||||||||||||| ||||||| |   |||| |||||||| ||||||||||| |||||||    
T  39101247 gacaccgacacatataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcggtgt 39101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 624
Target Start/End: Original strand, 6573981 - 6574047
Alignment:
Q  558 cggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcg 624  Q
    |||||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||| ||||||    
T  6573981 cggacaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 695
Target Start/End: Complemental strand, 20157361 - 20157285
Alignment:
Q  619 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| |||| ||||||||||||||||||||| || ||||||||||||  ||| ||| || ||||||||||    
T  20157361 gtgtcggtgtcg-tgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgaggagtatccgtgcttcata 20157285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 695
Target Start/End: Original strand, 34741916 - 34741964
Alignment:
Q  647 cgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  34741916 cgtgtccgacacgggacacgcctaatccgaagagtgtccgtgcttcata 34741964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Complemental strand, 18190119 - 18190049
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||| |||||  || |||||||||||| ||||||||||||||||||| ||||| || ||||||||    
T  18190119 gtgtcgatgtcagacaca-acacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcata 18190049  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 695
Target Start/End: Complemental strand, 18556441 - 18556386
Alignment:
Q  641 ccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| ||| |||||||| ||||||| |||||||||||||||||| ||||||||||    
T  18556441 ccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 18556386  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 607
Target Start/End: Original strand, 23440004 - 23440051
Alignment:
Q  560 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaa 607  Q
    ||||||||||| ||||||||||| ||||||||||  ||||||||||||    
T  23440004 gacaccgacacgtataataatttgagaaaatgatataatttagtgtaa 23440051  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 32899938 - 32900009
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||||||||| |||| |||| |||||||| ||||||||||| | ||||  |||||||||    
T  32899938 gtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgaggattgtccttgcttcata 32900009  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 695
Target Start/End: Original strand, 37598879 - 37598949
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||| |||||||||| ||| |||||||||||  ||||||| ||||||||||| |||||| ||||||||||    
T  37598879 gtgtcggtgtcggacac-gacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcata 37598949  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  625 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 694  Q
    |||||| |||||||||  |||| ||||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  42359460 gtgtcggtgtcggacaa-gacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Complemental strand, 6936452 - 6936395
Alignment:
Q  573 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 630  Q
    |||||||| | |||||||||   |||| ||||||||||||||||||||||| ||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcg 6936395  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 695
Target Start/End: Complemental strand, 19562605 - 19562557
Alignment:
Q  647 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  19562605 cgtgtccgacacagggacacacctaatccgaggagtgtc-gtgcttcata 19562557  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 691
Target Start/End: Complemental strand, 23219653 - 23219608
Alignment:
Q  647 cgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgctt 691  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||    
T  23219653 cgtgtccgacaccgtgacacacctaatccgagaagtgtttgtgctt 23219608  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 699
Target Start/End: Complemental strand, 23705454 - 23705417
Alignment:
Q  662 acacacctaatccgagaagtgtctgtgcttcataagat 699  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  23705454 acacacctaatccgagaagtgtatgtgcttcattagat 23705417  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 695
Target Start/End: Original strand, 42325640 - 42325677
Alignment:
Q  658 cgggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  42325640 cgggacacacctaattcgaggagtgtctgtgcttcata 42325677  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 695
Target Start/End: Original strand, 47989496 - 47989626
Alignment:
Q  564 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 661  Q
    |||||||| |||||||||||| ||||| |   |||| |||||||| | | |||||| ||||| ||||| |||||||||| ||| | |||| |||| ||||    
T  47989496 ccgacaca-ataataatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg-tgtcggtgtcggacac-gacacatgtctgacatcggg 47989592  T
Q  662 acacacctaatccgagaagtgtctgtgcttcata 695  Q
    |||| ||||||||||| |||||| ||||||||||    
T  47989593 acacgcctaatccgaggagtgtccgtgcttcata 47989626  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 596 - 695
Target Start/End: Original strand, 241624 - 241723
Alignment:
Q  596 aatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 693  Q
    ||||||||||||| ||  |||||| ||||| ||| | |||||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  241624 aatttagtgtaattatgagtgtcggtgtcg-tgttggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 695
Target Start/End: Complemental strand, 236965 - 236915
Alignment:
Q  646 gcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||||||||||    
T  236965 gcgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcata 236915  T

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Target: scaffold0049 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 695
Target Start/End: Original strand, 56932 - 57052
Alignment:
Q  576 ataatttaagaaaatgattaaatttagtgtaatcataggtgtc-gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatc 673  Q
    ||||||| ||||||||||  |||| |||||||||||| ||||| ||||| |||||| || |||| ||| | ||||||| |||| ||| | ||||||||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtcagtgtc-gtgtcggtgacggagaccaatgcgtgtctgacaccggaaaacacctaatc 57030  T
Q  674 cgagaagtgtctgtgcttcata 695  Q
     ||| ||||| |||||||||||    
T  57031 tgaggagtgtttgtgcttcata 57052  T

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Target: scaffold0499 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2879 - 2847
Alignment:
Q  18 taggtaatggtttaaagacttaaacttttaatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  2879 taggtaatggtttaaagacttaaacttttaatt 2847  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 661 - 695
Target Start/End: Original strand, 21372 - 21406
Alignment:
Q  661 gacacacctaatccgagaagtgtctgtgcttcata 695  Q
    ||||| |||||||||||||||||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcata 21406  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 32774 - 32824
Alignment:
Q  648 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataag 697  Q
    ||||||||||| ||||||||| ||||||||| |||||| ||||||||||||    
T  32774 gtgtccgacaccgggacacacataatccgaggagtgtcggtgcttcataag 32824  T

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