View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21398_low_3 (Length: 575)

Name: NF21398_low_3
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21398_low_3
NF21398_low_3
[»] chr2 (12 HSPs)
chr2 (281-481)||(11155530-11155730)
chr2 (25-208)||(11155296-11155458)
chr2 (313-480)||(11136946-11137113)
chr2 (313-481)||(11145245-11145413)
chr2 (313-480)||(11149179-11149346)
chr2 (319-414)||(11200120-11200215)
chr2 (373-481)||(11171230-11171338)
chr2 (380-480)||(11177243-11177343)
chr2 (333-480)||(10794026-10794173)
chr2 (313-478)||(11110094-11110259)
chr2 (314-477)||(11118099-11118262)
chr2 (313-478)||(11104099-11104264)
[»] chr4 (1 HSPs)
chr4 (452-522)||(39800863-39800933)
[»] chr5 (1 HSPs)
chr5 (457-502)||(5654000-5654045)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 281 - 481
Target Start/End: Original strand, 11155530 - 11155730
Alignment:
Q  281 tgcgtcaaaaaataatgtgatgcataattttcacagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11155530 tgcgtcaaaaaataatgtgatgcataattttcacagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttc 11155629  T
Q  381 caaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11155630 caaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc 11155729  T
Q  481 t 481  Q
    |    
T  11155730 t 11155730  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 11155296 - 11155458
Alignment:
Q  25 gagatgaagagaaaataaatgtagaagtagaatgtacgtaagaaaagtaagagagatgcaaatataattgttcggnnnnnnnntagggttctaataattg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||    
T  11155296 gagatgaagagaaaataaatgtagaagtagaatgtacgtaagaaaagtaagagagatgcaaata---------------------gggttctaataattg 11155374  T
Q  125 tcttgcacttctttttgttatattttataaaattatgcattaactagtattgtctaaaaattgtaggccaagtatatgaatcaa 208  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11155375 tcttgcacttcttttctttatattttataaaattatgcattaactagtattttctaaaaattgtaggccaagtatatgaatcaa 11155458  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 313 - 480
Target Start/End: Original strand, 11136946 - 11137113
Alignment:
Q  313 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 412  Q
    |||||| |||||||| || ||||| |||||||| |||| ||| || || || |||||| ||||||| ||||||| ||||||| || ||||||||||||||    
T  11136946 acagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgtt 11137045  T
Q  413 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc 480  Q
    || ||||| |||||||| ||  | ||||  ||||||||||||||||||||||||||||||||||||||    
T  11137046 gtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattcttgc 11137113  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 313 - 481
Target Start/End: Original strand, 11145245 - 11145413
Alignment:
Q  313 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 412  Q
    |||||| |||||||| || ||||||||||| || |||||||| || || || |||||| | ||||||||||| |  ||||| || |||||||||||||||    
T  11145245 acagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgtt 11145344  T
Q  413 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgct 481  Q
    || ||||| |||||||| ||  ||||||  ||||| |||||||||||||||||||||||||||||||||    
T  11145345 gtgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgct 11145413  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 313 - 480
Target Start/End: Original strand, 11149179 - 11149346
Alignment:
Q  313 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 412  Q
    |||||| |||||||| || |||||  ||||||| |||| |||  | || || |||||| | ||||||||||| |  ||||| ||||||||||| ||||||    
T  11149179 acagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgtt 11149278  T
Q  413 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc 480  Q
    || ||||| |||||||| ||| | ||||  ||||||||||||||||||||||| ||||||||||||||    
T  11149279 gtgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattcttgc 11149346  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 414
Target Start/End: Original strand, 11200120 - 11200215
Alignment:
Q  319 atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgt 414  Q
    ||||||||| ||||||||| ||||||| || || || ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  11200120 atgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgt 11200215  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 11171230 - 11171338
Alignment:
Q  373 agcttttccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgat 472  Q
    |||||||  ||||||||||||  |||||||||| |||||||| ||||| |||||||| ||  | |||| ||||||||||||||| |||||||||||||||    
T  11171230 agcttttggaaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgat 11171329  T
Q  473 attcttgct 481  Q
    |||||||||    
T  11171330 attcttgct 11171338  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 380 - 480
Target Start/End: Original strand, 11177243 - 11177343
Alignment:
Q  380 ccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttg 479  Q
    ||||||||||||||  ||||||||||||| ||  |||| ||||||||||| ||  | |||| ||||||||||||||| ||||||||||||||||||||||    
T  11177243 ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttg 11177342  T
Q  480 c 480  Q
    |    
T  11177343 c 11177343  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 333 - 480
Target Start/End: Complemental strand, 10794173 - 10794026
Alignment:
Q  333 ttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgtaaatcagatcaaaactgc 432  Q
    ||||| ||||||| |||||||| ||||| ||||||| ||||||| | ||||||| ||||||  ||||||||||| | ||||| ||||  ||||| || |     
T  10794173 ttttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttgcaagttgtgaatcgtatcaagacaga 10794074  T
Q  433 tatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgc 480  Q
      | ||||  ||||| ||||| ||||||||||||||||||||||||||    
T  10794073 cgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgc 10794026  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 11110094 - 11110259
Alignment:
Q  313 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 412  Q
    |||||| |||||||| || ||||||||||| || || || || || || || |||||| | ||||||||||||| |||||| |||||||| |||||||||    
T  11110094 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 11110193  T
Q  413 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattctt 478  Q
     | ||||| ||||| |||    | ||||  ||||| ||||| | ||||||||||||||||||||||    
T  11110194 atcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt 11110259  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 477
Target Start/End: Original strand, 11118099 - 11118262
Alignment:
Q  314 cagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttg 413  Q
    ||||| |||||||| || ||||||||||| || ||| |||| || |  || |||||| | |||  ||||||||  ||||| |||||| | |||||||||     
T  11118099 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 11118198  T
Q  414 taaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattct 477  Q
    | |||||||| |||||||   | ||||  | ||||||||| | |||||||||||||||||||||    
T  11118199 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 11118262  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 11104099 - 11104264
Alignment:
Q  313 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 412  Q
    |||||| |||||||  || |||||||||||||| |||| ||| || || || |||||| | || |||||||| |  ||||| ||||   |||||||||||    
T  11104099 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgtt 11104198  T
Q  413 gtaaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattctt 478  Q
    || ||| | ||||| || ||  | |||   |  ||||||||||| |||||||||||||||||||||    
T  11104199 gtgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 11104264  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 452 - 522
Target Start/End: Original strand, 39800863 - 39800933
Alignment:
Q  452 aacacagtttcttgtgctgatattcttgctttggctactcgagatgttattaatctggtttgttcttcaac 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39800863 aacaaagtttcttgtgctgatattcttgctttggctactcgagatgttattaatctggtttgttcttcaac 39800933  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 5654045 - 5654000
Alignment:
Q  457 agtttcttgtgctgatattcttgctttggctactcgagatgttatt 502  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||    
T  5654045 agtttcttgtgctgatattcttgctatggcaactcgtgatgttatt 5654000  T

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