View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21398_low_4 (Length: 434)
Name: NF21398_low_4
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21398_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Original strand, 14388849 - 14389254
Alignment:
| Q |
20 |
tgtacttccttcttttctatttaaaagtgataccaagtgcttctcttcaaccacttcacacatgccaaaacacaatcgtgtataaaagtgaaactcttgg |
119 |
Q |
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| T |
14388849 |
tgtacttccttcttttctatttaaaagtgataccaaatgcttctcttcaaccacttcacacatgccaaaacacaatcgtgtataaaagtgaaactctcgg |
14388948 |
T |
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| Q |
120 |
cagtaatcaggatatcgttgcattcacgcgtaatgagttttccggagtcaataagcaagatttatcaagtgagcggttagtaaatgcaaatgtctcgcca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
14388949 |
cagtaatcaggatatcgttgcattcacgcgtaatgagttttccggagtcaataagcaagatttatctagtgagcggttagtaaatgctaatgtctcgcca |
14389048 |
T |
|
| Q |
220 |
gcatctggtcgaatggagctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctgcttcaagaataatgacaattcttgatgcttacc |
319 |
Q |
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| T |
14389049 |
gcatctggccgaatggagctaagt-atggaagaataaagatacataatgcatcaggtaaggaacctgcttcaagaataatgacaattcttgatgcttacc |
14389147 |
T |
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| Q |
320 |
ctacaatttatctnnnnnnntaccttgtaattattttctcctttcattttcatattttacttcttatgataagtgattggaactgagatatctctttttc |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14389148 |
ctacaatttatctaaaaaaataccttgtaattattttctcctttcattttcatattttacttcttatgataagtgattggaactgagatatctctttttc |
14389247 |
T |
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| Q |
420 |
ctttgct |
426 |
Q |
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||||||| |
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| T |
14389248 |
ctttgct |
14389254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 383
Target Start/End: Complemental strand, 16026138 - 16025902
Alignment:
| Q |
137 |
ttgcattcacgcgtaatgagttttccggagtcaataagcaagatttatcaagtgagcggttagtaaatgcaaatgtctcgccagcatctggtcgaatgga |
236 |
Q |
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||||||||| || |||| || | || |||||||||||||||||| | || |||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
16026138 |
ttgcattcatgcctaataagctatcaggagtcaataagcaagatctctctggtgagcggttagagaatgctaatgtctcgccagcatctg---gaatgga |
16026042 |
T |
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| Q |
237 |
gctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctgcttcaagaataatgacaattcttgatgcttaccctacaatttatctnnnn |
336 |
Q |
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||||||||||||||||| | ||||| |||| ||||||||| ||||| || ||||||||| | ||| |||||||||||||| ||| |||| |
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| T |
16026041 |
gctaagtaatggaagaacagagatagataacacatcaggtacggaacttggttcaagaattaagac---gcttgatgcttaccc----attgatctaaaa |
16025949 |
T |
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| Q |
337 |
nnntaccttgtaattattttctcctttcattttcatattttacttct |
383 |
Q |
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| T |
16025948 |
gaataccttgtaattattttctcctttcatattcatatgttacttct |
16025902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 26204577 - 26204492
Alignment:
| Q |
233 |
tggagctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctgcttcaagaataatgacaattcttgatgcttac |
318 |
Q |
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|||||| |||||| ||||||| ||| ||| |||||||||||||| ||||| || | |||||| |||||||| |||||||||||| |
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| T |
26204577 |
tggagcaaagtaacggaagaacaaacataaataatgcatcaggttgggaacttgataaaagaatgatgacaatacttgatgcttac |
26204492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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