View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21398_low_5 (Length: 412)

Name: NF21398_low_5
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21398_low_5
NF21398_low_5
[»] chr5 (12 HSPs)
chr5 (20-397)||(30048294-30048671)
chr5 (20-196)||(16596478-16596654)
chr5 (234-392)||(16597894-16598047)
chr5 (238-397)||(10275516-10275674)
chr5 (220-326)||(12019839-12019945)
chr5 (220-326)||(37659777-37659883)
chr5 (220-326)||(7102875-7102981)
chr5 (220-326)||(16795219-16795325)
chr5 (220-326)||(30696346-30696452)
chr5 (220-326)||(40370748-40370854)
chr5 (20-132)||(15065627-15065739)
chr5 (241-329)||(15065838-15065926)
[»] chr3 (5 HSPs)
chr3 (20-380)||(22930619-22930968)
chr3 (233-397)||(9698560-9698724)
chr3 (206-397)||(43548694-43548885)
chr3 (238-326)||(21848178-21848266)
chr3 (220-326)||(54170845-54170951)
[»] chr4 (5 HSPs)
chr4 (233-397)||(27187118-27187282)
chr4 (215-397)||(31355658-31355840)
chr4 (220-328)||(43682681-43682789)
chr4 (220-326)||(44148108-44148214)
chr4 (355-399)||(25171115-25171159)
[»] chr2 (6 HSPs)
chr2 (240-397)||(13270049-13270206)
chr2 (232-316)||(42515385-42515469)
chr2 (220-326)||(8051942-8052048)
chr2 (220-326)||(36671601-36671707)
chr2 (238-395)||(17256261-17256418)
chr2 (46-90)||(13269872-13269916)
[»] chr8 (10 HSPs)
chr8 (238-397)||(1287806-1287965)
chr8 (29-133)||(17784936-17785040)
chr8 (220-326)||(201185-201291)
chr8 (220-326)||(316022-316128)
chr8 (220-326)||(30409304-30409410)
chr8 (220-326)||(43810984-43811090)
chr8 (220-326)||(28647461-28647567)
chr8 (220-326)||(41946366-41946472)
chr8 (26-119)||(41946556-41946649)
chr8 (26-90)||(28647680-28647744)
[»] scaffold0044 (1 HSPs)
scaffold0044 (220-326)||(48366-48472)
[»] chr7 (2 HSPs)
chr7 (220-326)||(27757947-27758053)
chr7 (220-326)||(7943584-7943690)
[»] chr6 (8 HSPs)
chr6 (220-326)||(8319005-8319111)
chr6 (220-326)||(17880980-17881086)
chr6 (220-326)||(27571233-27571339)
chr6 (224-326)||(17160643-17160745)
chr6 (220-397)||(21414100-21414277)
chr6 (244-317)||(23254611-23254684)
chr6 (22-133)||(23254770-23254881)
chr6 (26-119)||(27571056-27571149)
[»] chr1 (2 HSPs)
chr1 (220-326)||(26312563-26312669)
chr1 (220-326)||(39794945-39795051)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 30048671 - 30048294
Alignment:
Q  20 tcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048671 tcctcttcattctttacttgcttccgtttaccggtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 30048572  T
Q  120 agcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcg 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048571 agcctttcttcttgccttgataattaccagaacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcg 30048472  T
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048471 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 30048372  T
Q  320 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  30048371 ttctttcagacattattaattcacgtgcctccaatgaactctgcatttcttcaattttcaaagttttcacatcctttg 30048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 16596478 - 16596654
Alignment:
Q  20 tcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    |||||||| ||||||  |||||||| ||||||||||||||| ||||||||||||||||||||  |||| |||||||||||   || ||||||||||||||    
T  16596478 tcctcttctttctttgattgcttccttttaccagtccaacactcagaagcataatgaccaaatatttctcaattataacattgtaccttcttcttatcaa 16596577  T
Q  120 agcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttc 196  Q
    | ||  |||| |||||||| ||||| ||| | |||||||||||||||||||||| ||| || || ||||| ||||||    
T  16596578 aacccctctttttgccttggtaatttccaaagcctcctccttttgaagattcagctttgtcgctagctttcttcttc 16596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 392
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
Q  234 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt 333  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||           
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc 16597988  T
Q  334 attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc 392  Q
    || |||||| |||| ||||||||||||| || ||||| ||| |||||||||| ||||||    
T  16597989 atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc 16598047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
Q  238 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 337  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca 10275576  T
Q  338 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  10275575 attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  320 ttctttc 326  Q
    |||||||    
T  12019845 ttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  320 ttctttc 326  Q
    |||||||    
T  37659783 ttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  320 ttctttc 326  Q
    |||||||    
T  7102975 ttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  320 ttctttc 326  Q
    |||||||    
T  16795225 ttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  320 ttctttc 326  Q
    |||||||    
T  30696352 ttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 40370748 - 40370854
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | |    
T  40370748 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc 40370847  T
Q  320 ttctttc 326  Q
    |||||||    
T  40370848 ttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 15065627 - 15065739
Alignment:
Q  20 tcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    ||||| ||||||||| ||||||| | |||||||| ||||||||| |||||| | ||| |||| |||||||| ||| ||||    ||||||||||||||||    
T  15065627 tcctcatcattctttgcttgctttcctttaccagaccaacattcggaagcaaagtgatcaaaattttcacatttaaaacattgaatcttcttcttatcaa 15065726  T
Q  120 agcctttcttctt 132  Q
    |  ||||||||||    
T  15065727 aatctttcttctt 15065739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
Q  241 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 329  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| ||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga 15065926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 22930619 - 22930968
Alignment:
Q  20 tcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    ||||||||||||||||||| ||||| |||||||| ||  |||||||| |||||  |  ||||||||||||||||||| ||  |   ||||||||||| ||    
T  22930619 tcctcttcattctttactttcttccctttaccagaccggcattcagatgcatagagggcaaacttttcacaattatagcattaatccttcttcttatgaa 22930718  T
Q  120 agcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcg 219  Q
    | | ||||||||||  |||||||       ||| || |||||||||| |||||   || ||| || |||||||||||  |||      |||||||||||     
T  22930719 aacatttcttcttgttttgataaa------aacttcatccttttgaacattcaccattttcaatgactttgttcttccattt------tgaccagtttcc 22930806  T
Q  220 -cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcacta 318  Q
     ||||| |||||| | |||||||||||||| ||||| ||| || | |||||  | || | |||||||||||| ||   ||||||||||||||||||||||    
T  22930807 tcccttggagttattcttgcctttcttgaagttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaattgatctttcacta 22930906  T
Q  319 cttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaa 380  Q
    ||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| |||||    
T  22930907 cttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttcaa 22930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 9698724 - 9698560
Alignment:
Q  233 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 332  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 9698625  T
Q  333 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  9698624 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 9698560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 397
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
Q  206 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 305  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  306 tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    |||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | |||||||||||    
T  43548785 tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg 43548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
Q  238 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 326  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  320 ttctttc 326  Q
    |||||||    
T  54170945 ttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 27187282 - 27187118
Alignment:
Q  233 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 332  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 27187183  T
Q  333 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  27187182 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 27187118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 397
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
Q  215 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 314  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  315 actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    ||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | |||||||||||    
T  31355740 acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  320 ttctttcag 328  Q
    |||||||||    
T  43682781 ttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  320 ttctttc 326  Q
    |||||||    
T  44148114 ttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 25171159 - 25171115
Alignment:
Q  355 gaactctgcatttcttcaattttcaaagtttgcacatcctttgct 399  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||||    
T  25171159 gaactctgcaattcttcaatcttcatagttttcacatcctttgct 25171115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 397
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
Q  240 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat 339  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat 13270148  T
Q  340 tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    ||| |||| || || |||||||||| ||||||||| ||||| || | |||||| ||||    
T  13270149 tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg 13270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  232 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 316  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  320 ttctttc 326  Q
    |||||||    
T  8051948 ttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  320 ttctttc 326  Q
    |||||||    
T  36671607 ttctttc 36671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 395
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
Q  238 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 337  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca 17256319  T
Q  338 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt 395  Q
    ||||| | || ||||  ||||| |||| |||| |||| ||||| |||| |||||||||    
T  17256318 attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 13269872 - 13269916
Alignment:
Q  46 tttaccagtccaacattcagaagcataatgaccaaacttttcaca 90  Q
    |||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  13269872 tttaccagaccaacattctgaagcataatgtccaaatttttcaca 13269916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 397
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
Q  238 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 337  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca 1287866  T
Q  338 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    ||||| |||| || || |||||||||| ||| ||||| ||||| || | |||||||||||    
T  1287865 attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 17784936 - 17785040
Alignment:
Q  29 ttctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttct 128  Q
    |||||||||||||| | |||||||| ||| |||| ||||||| | |||||||| || ||||| ||| |||| |  ||||||||||||||||| |||||||    
T  17784936 ttctttacttgctttcctttaccagaccagcatttagaagcaaagtgaccaaaattctcacatttaaaacaccgaatcttcttcttatcaaaacctttct 17785035  T
Q  129 tcttg 133  Q
    |||||    
T  17785036 tcttg 17785040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 201185 - 201291
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  320 ttctttc 326  Q
    |||||||    
T  201285 ttctttc 201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 316022 - 316128
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  320 ttctttc 326  Q
    |||||||    
T  316122 ttctttc 316128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  320 ttctttc 326  Q
    |||||||    
T  30409404 ttctttc 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  320 ttctttc 326  Q
    |||||||    
T  43811084 ttctttc 43811090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  320 ttctttc 326  Q
    |||||||    
T  28647467 ttctttc 28647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  320 ttctttc 326  Q
    |||||||    
T  41946372 ttctttc 41946366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 41946649 - 41946556
Alignment:
Q  26 tcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || ||||| ||  ||||    ||||||||||||||||    
T  41946649 tcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 41946556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 28647744 - 28647680
Alignment:
Q  26 tcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcaca 90  Q
    |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || |||||    
T  28647744 tcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcaca 28647680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 48366 - 48472
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  320 ttctttc 326  Q
    |||||||    
T  48466 ttctttc 48472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  320 ttctttc 326  Q
    |||||||    
T  27757953 ttctttc 27757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  320 ttctttc 326  Q
    |||||||    
T  7943684 ttctttc 7943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  320 ttctttc 326  Q
    |||||||    
T  8319105 ttctttc 8319111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  320 ttctttc 326  Q
    |||||||    
T  17881080 ttctttc 17881086  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  320 ttctttc 326  Q
    |||||||    
T  27571333 ttctttc 27571339  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
Q  224 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 323  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  324 ttc 326  Q
    |||    
T  17160645 ttc 17160643  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 397
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||      
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt 21414199  T
Q  320 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 397  Q
    |||||||||  |  || |||||| |||| || || ||||||| || ||| ||||| ||||| || | |||||||||||    
T  21414200 ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg 21414277  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  244 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 317  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 23254881 - 23254770
Alignment:
Q  22 ctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaag 121  Q
    |||| |||||||| ||||||| | ||||| || ||  ||||||||| || | ||||||||||| ||||| ||| | ||    |||||||||||||||||     
T  23254881 ctctacattctttgcttgctttcctttactagacccgcattcagaaacaaagtgaccaaacttctcacatttaaagcactgaatcttcttcttatcaaaa 23254782  T
Q  122 cctttcttcttg 133  Q
    ||||||||||||    
T  23254781 cctttcttcttg 23254770  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 27571056 - 27571149
Alignment:
Q  26 tcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaa 119  Q
    |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || ||||| ||  ||||    ||||||||||||||||    
T  27571056 tcattctttgattgctttcctttaccagaccaacattcagatgcataatgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 27571149  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  320 ttctttc 326  Q
    |||||||    
T  26312569 ttctttc 26312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
Q  220 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 319  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  320 ttctttc 326  Q
    |||||||    
T  39794951 ttctttc 39794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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