View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21398_low_6 (Length: 365)
Name: NF21398_low_6
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21398_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 44224737 - 44224400
Alignment:
| Q |
19 |
catatgctattccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224737 |
catatgctattccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaa |
44224638 |
T |
|
| Q |
119 |
tgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224637 |
tgttggaaggtaaaagaagtttcttttattctgtttggagaatgtagtattgaacgtcacttctactatctagtttgcatttgtgtgttacttatgatgt |
44224538 |
T |
|
| Q |
219 |
gaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224537 |
gaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
44224438 |
T |
|
| Q |
319 |
agaaacatgattgttgccaatacatttgggtcctttgc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44224437 |
agaaacatgattgttgccaatacatttgggtcctttgc |
44224400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 44212571 - 44212234
Alignment:
| Q |
19 |
catatgctattccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaa |
118 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212571 |
catatgctattccttcatggattctcaagattcccgtctcattagtggaagtttctctctgggtgtttcttacctactatgttattggatttgatccaaa |
44212472 |
T |
|
| Q |
119 |
tgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgt |
218 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||| ||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||| ||||||| |
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| T |
44212471 |
tgttgggaggtaaaataagttgcttttattctgtttggagcatgtagtattgaatgtcagttctactgtctagtttgtatttgtatgttactaatgatgt |
44212372 |
T |
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| Q |
219 |
gaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
318 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212371 |
gaggtcttgaattctaggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
44212272 |
T |
|
| Q |
319 |
agaaacatgattgttgccaatacatttgggtcctttgc |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44212271 |
agaaacatgattgttgccaatacatttgggtcctttgc |
44212234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 44235547 - 44235215
Alignment:
| Q |
19 |
catatgctattccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235547 |
catatgctattccttcgtggattctcaagattcccatctcattagtggaagtttctctatgggtgtttcttacctactatgttattggatttgatccaaa |
44235448 |
T |
|
| Q |
119 |
tgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatgatgt |
218 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||| ||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
44235447 |
tgttggaaggtaaaagaaatttcttttattctgtttggagcatgtggtattgaatgccactt---ctatcttgtttgcatttg-atgttacttatgatgt |
44235352 |
T |
|
| Q |
219 |
gaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
318 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235351 |
gaggtcttgaa-ttttggcaggatgttcaagcagttccttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccctgggt |
44235253 |
T |
|
| Q |
319 |
agaaacatgattgttgccaatacatttgggtcctttgc |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44235252 |
agaaacatgattgttgccaatacatttgggtcctttgc |
44235215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 2885507 - 2885547
Alignment:
| Q |
316 |
ggtagaaacatgattgttgccaatacatttgggtcctttgc |
356 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2885507 |
ggtagaaacatgattgtggccaatacatttgggtcctttgc |
2885547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 2898906 - 2898866
Alignment:
| Q |
316 |
ggtagaaacatgattgttgccaatacatttgggtcctttgc |
356 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
2898906 |
ggtagaaacatgattgtggccaacacatttggatcctttgc |
2898866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 39549563 - 39549496
Alignment:
| Q |
64 |
tggaagtttctctttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaa |
131 |
Q |
| |
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|||||||| || ||||||| || |||||||||||||| ||||| || |||||| || ||||||||||| |
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| T |
39549563 |
tggaagttgctgtttgggtattccttacctactatgtcattggtttcgatccatatattggaaggtaa |
39549496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 39566480 - 39566425
Alignment:
| Q |
76 |
tttgggtgtttcttacctactatgttattggatttgatccaaatgttggaaggtaa |
131 |
Q |
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|||||||||| |||||||||||||| ||||| ||||||||| || ||| ||||||| |
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|
| T |
39566480 |
tttgggtgttccttacctactatgtcattggttttgatccatatattgaaaggtaa |
39566425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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