View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21398_low_7 (Length: 344)
Name: NF21398_low_7
Description: NF21398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21398_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 33652294 - 33652528
Alignment:
| Q |
18 |
agatcaaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaacatgaaaatatacatggaatactaaaatagtaccaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33652294 |
agatcaaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaacatgaaaataaacatggaatactaaaatagtaccaacc |
33652393 |
T |
|
| Q |
118 |
agaattttctgcaaaactatccat---ttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcata |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
33652394 |
agaattttctgcaaaactatccatcagttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttactagagataaccaattagcata |
33652493 |
T |
|
| Q |
215 |
cgaaggcgatgcaattggtcccatatcattgaata |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33652494 |
cgaaggcgatgcaattggtcccatatcattgaata |
33652528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 4365381 - 4365576
Alignment:
| Q |
44 |
tatctatcattgaatacctcataggaaatcataaaacatgaaaatatacatggaatactaaaatagtaccaaccagaat-tttctgcaaaactatccat- |
141 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||| ||| |||| || |||||||| || |||||||| || || ||||||||||||||||| | |
|
|
| T |
4365381 |
tatctatcattgaataccttatagaaaggtataaaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatccttc |
4365480 |
T |
|
| Q |
142 |
--ttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcatacgaaggcgatgcaattggtc |
234 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| || ||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
4365481 |
aattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtc |
4365576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University