View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21399_high_5 (Length: 337)
Name: NF21399_high_5
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21399_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 1904133 - 1903810
Alignment:
| Q |
1 |
aacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccga |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1904133 |
aacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccga |
1904034 |
T |
|
| Q |
101 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
1904033 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgtt |
1903934 |
T |
|
| Q |
201 |
tagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgactg |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
1903933 |
tagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgactg |
1903838 |
T |
|
| Q |
301 |
atttgtcaagtgtcacaactcattcatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
1903837 |
atttgtcaagtgtcacaactcattcatc |
1903810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 1908366 - 1908043
Alignment:
| Q |
1 |
aacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1908366 |
aacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaaccga |
1908267 |
T |
|
| Q |
101 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
1908266 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaactgtt |
1908167 |
T |
|
| Q |
201 |
tagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagtgactg |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
1908166 |
tagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagtgactg |
1908071 |
T |
|
| Q |
301 |
atttgtcaagtgtcacaactcattcatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
1908070 |
atttgtcaagtgtcacaactcattcatc |
1908043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 1898928 - 1898780
Alignment:
| Q |
1 |
aacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
1898928 |
aacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgccccctttaagcga |
1898829 |
T |
|
| Q |
101 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
149 |
Q |
| |
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|| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
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| T |
1898828 |
actgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
1898780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1888366 - 1888222
Alignment:
| Q |
1 |
aacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaaccga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||| || |||||||| || |
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|
| T |
1888366 |
aacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctccctttaaacgc |
1888267 |
T |
|
| Q |
101 |
acagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
145 |
Q |
| |
|
| ||||| ||| ||||| |||| ||||| || ||||| |||||| |
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|
| T |
1888266 |
attgaccatgcataaactatattccctattaattttcccaaaatt |
1888222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 1893213 - 1893124
Alignment:
| Q |
4 |
atgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctt |
93 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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|
| T |
1893213 |
atgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1881066 - 1880971
Alignment:
| Q |
1 |
aacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaa |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||| || |||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
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|
| T |
1881066 |
aacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgttacatagacagctccctttaa |
1880971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 1914243 - 1914151
Alignment:
| Q |
4 |
atgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctttaa |
96 |
Q |
| |
|
||||||||||||||||||||| ||||| || || | | |||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
1914243 |
atgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggttacatagacagccccctttaa |
1914151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
262 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
314 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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