View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21399_low_1 (Length: 914)

Name: NF21399_low_1
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21399_low_1
NF21399_low_1
[»] chr3 (7 HSPs)
chr3 (77-906)||(13219260-13220089)
chr3 (19-82)||(13220106-13220169)
chr3 (847-906)||(13217036-13217095)
chr3 (589-641)||(47842098-47842150)
chr3 (594-646)||(47842174-47842226)
chr3 (39-82)||(21660031-21660074)
chr3 (513-573)||(47842228-47842288)
[»] scaffold0002 (3 HSPs)
scaffold0002 (77-902)||(237620-238445)
scaffold0002 (47-82)||(237540-237575)
scaffold0002 (835-902)||(240602-240669)
[»] scaffold0187 (2 HSPs)
scaffold0187 (77-372)||(30215-30511)
scaffold0187 (19-82)||(30528-30591)
[»] chr1 (3 HSPs)
chr1 (77-372)||(37908566-37908862)
chr1 (19-82)||(37908486-37908549)
chr1 (861-906)||(39386263-39386308)
[»] chr2 (2 HSPs)
chr2 (396-745)||(10996334-10996680)
chr2 (592-630)||(3065837-3065875)
[»] chr7 (5 HSPs)
chr7 (77-193)||(18045181-18045297)
chr7 (815-903)||(14541323-14541411)
chr7 (42-82)||(35070125-35070165)
chr7 (42-82)||(35096171-35096211)
chr7 (670-703)||(32566650-32566683)
[»] chr4 (3 HSPs)
chr4 (173-262)||(29443212-29443301)
chr4 (811-906)||(18176963-18177058)
chr4 (592-630)||(18013446-18013484)
[»] chr8 (2 HSPs)
chr8 (77-150)||(7243484-7243557)
chr8 (19-82)||(7243574-7243637)
[»] chr5 (3 HSPs)
chr5 (847-906)||(39047942-39048001)
chr5 (77-143)||(38363023-38363089)
chr5 (322-380)||(41602027-41602085)
[»] scaffold0380 (1 HSPs)
scaffold0380 (847-906)||(15664-15723)


Alignment Details
Target: chr3 (Bit Score: 810; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 810; E-Value: 0
Query Start/End: Original strand, 77 - 906
Target Start/End: Complemental strand, 13220089 - 13219260
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13220089 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 13219990  T
Q  177 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgccccgcactgagcgcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219989 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgccccgcactgagcgcc 13219890  T
Q  277 ggactattcgttgaagataaaagtacatcgaacccatatgaagttttaccatgagcagattgtatccattgggcaaatataggttcgatcaagatttgtt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219889 ggactattcgttgaagataaaagtacatcgaacccatatgaagttttaccatgagcagattgtatccattgggcaaatataggttcgatcaagatttgtt 13219790  T
Q  377 tctccggagtcccaaaagcaagcatgacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219789 tctccggagtcccaaaagcaagcatgacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgat 13219690  T
Q  477 agcttctttgtgctctaacattcttgccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccct 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  13219689 agcttctttgtgctctaacattcttgccaatacattatcctcattctgttcgggattgtaatcccgaataaaaaatatcgctccatgagcaaaagcccct 13219590  T
Q  577 gtcataataaagcctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgt 676  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219589 gtcataataaatcctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgt 13219490  T
Q  677 gttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcc 776  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219489 gttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcc 13219390  T
Q  777 acgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgaga 876  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219389 acggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgaga 13219290  T
Q  877 aaaagaattgcaatagctaaatgatgatgt 906  Q
    ||||||||||||||||||||||||||||||    
T  13219289 aaaagaattgcaatagctaaatgatgatgt 13219260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 13220106 - 13220169
Alignment:
Q  19 ttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13220106 ttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttat 13220169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 847 - 906
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  847 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 906  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 589 - 641
Target Start/End: Complemental strand, 47842150 - 47842098
Alignment:
Q  589 cctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttg 641  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47842150 cctgcaatgtattgatgatgagtatataacgcagtttgagtagtaaagtcttg 47842098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 646
Target Start/End: Complemental strand, 47842226 - 47842174
Alignment:
Q  594 aatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgcta 646  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  47842226 aatgtattgatgatgagtatataacgcagcttgagtagtaaaatcctgtgcta 47842174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 21660074 - 21660031
Alignment:
Q  39 gacgaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21660074 gacgaggtggtacttgtgatatttcggcttgggacgcattttat 21660031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 573
Target Start/End: Complemental strand, 47842288 - 47842228
Alignment:
Q  513 atcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcc 573  Q
    ||||||||||| |||||||||  |||| |||||||| ||||||||||||| ||||||||||    
T  47842288 atcctcattctattcgggattgcaatctcgaataaagaatatcgctccataagcaaaagcc 47842228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 77 - 902
Target Start/End: Original strand, 237620 - 238445
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 176  Q
    |||||||||||||||| |||||||||||||| || ||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  237620 ttttatccggcattaatttggaaccgcgtgcgtctaaagcgccctttactaaaatcaatgtagttgtatgcaaacctagagcaatagcatgatgaaccaa 237719  T
Q  177 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgccccgcactgagcgcc 276  Q
    ||| || ||||| |||||||||||||| || ||||||||||||||||||| |||||| ||||| || |||||||||| |||||| |||||| |||  ||     
T  237720 gaaatccccaggtcctattgttaagaaaagcgaattactattctcattaacagcattcaaccatccgggcaaccataggcttcgacccgcattgaaagcg 237819  T
Q  277 ggactattcgttgaagataaaagtacatcgaacccatatgaagttttaccatgagcagattgtatccattgggcaaatataggttcgatcaagatttgtt 376  Q
    || | ||||||||||||||| |||| ||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  237820 gggccattcgttgaagataagagtatatcgaacccatatgtcgtcttgccatgagcagattgtatccattgggcaaatataggttcgatcaagatttgct 237919  T
Q  377 tctccggagtcccaaaagcaagcatgacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgat 476  Q
    | || ||||| ||||||||||||||||| || ||||| |||||||| ||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||    
T  237920 tttctggagtaccaaaagcaagcatgacgtcgttatgaacataaaggcccaaggtatggaatcctagaaagaggctagcccaacttaaatgagatatgat 238019  T
Q  477 agcttctttgtgctctaacattcttgccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccct 576  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| ||||| || |||||||||||||||||||||    
T  238020 agcttctttatggtctaacattcttgccaatacattatcctcattctgttccggattgtaatccctaatgaaaaaaatagctccatgagcaaaagcccct 238119  T
Q  577 gtcataataaagcctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgt 676  Q
    ||||| || || || ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| |    
T  238120 gtcatgatgaaccccgcaatatattggtgatgagtatataaagcagcttgagtagtaaagtcttgtgctatgaatgcataaggaggtaaagagtacatat 238219  T
Q  677 gttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtcc 776  Q
    |||||||||| || |||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||    
T  238220 gttgagctactaaggaagtaataacccctaaagaagctagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgccc 238319  T
Q  777 acgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgaga 876  Q
    |||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||    
T  238320 acgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgaga 238419  T
Q  877 aaaagaattgcaatagctaaatgatg 902  Q
    |||| || ||||||||||||||||||    
T  238420 aaaataaatgcaatagctaaatgatg 238445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 237575 - 237540
Alignment:
Q  47 ggtacttgtgatatttcggcttgggacgcattttat 82  Q
    ||||||||||||||||| ||||||||||||||||||    
T  237575 ggtacttgtgatatttctgcttgggacgcattttat 237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 902
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  835 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 902  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 277; Significance: 1e-154; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 77 - 372
Target Start/End: Complemental strand, 30511 - 30215
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 176  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30511 ttttatccggcattaacttggaaccgcgtgcatccagagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 30412  T
Q  177 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgccccgcactgagcgcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30411 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggaaaccatatgcttcgccccgcactgagcgcc 30312  T
Q  277 ggactattcgttgaagataaaagtacatcgaacccatatgaagttttaccatgagcagattgtatccatt-gggcaaatataggttcgatcaagatt 372  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30311 ggactattcgttgaagataaaagtacatcgtacccatatgaagttttaccatgagcagattgtatccattggggcaaatataggttcgatcaagatt 30215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 30528 - 30591
Alignment:
Q  19 ttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30528 ttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttat 30591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 77 - 372
Target Start/End: Original strand, 37908566 - 37908862
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 176  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37908566 ttttatccggcattaacttggaaccgcgtgcatccagagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 37908665  T
Q  177 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgccccgcactgagcgcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37908666 gaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggaaaccatatgcttcgccccgcactgagcgcc 37908765  T
Q  277 ggactattcgttgaagataaaagtacatcgaacccatatgaagttttaccatgagcagattgtatccatt-gggcaaatataggttcgatcaagatt 372  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37908766 ggactattcgttgaagataaaagtacatcgtacccatatgaagttttaccatgagcagattgtatccattggggcaaatataggttcgatcaagatt 37908862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 37908549 - 37908486
Alignment:
Q  19 ttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37908549 ttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttat 37908486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 906
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  861 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 906  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 396 - 745
Target Start/End: Complemental strand, 10996680 - 10996334
Alignment:
Q  396 aagcatgacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaac 495  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  10996680 aagcataacatcattatggacataaagtcccaaagtatggaaccctagaaataggatggctcaacttaaatgggatatgatagcttctttgtgctctaac 10996581  T
Q  496 attcttgccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaa 595  Q
    ||   |||||||||||||| |||||| ||||||||||| ||||| | |||||||| ||||| ||||||||||||||| | |||||||||||| |||||||    
T  10996580 atc--tgccaatacattattctcattatgttcgggattgtaatctcaaataaaaa-tatcgttccatgagcaaaagctcatgtcataataaatcctgcaa 10996484  T
Q  596 tgtattgatgatgagtatataacgcagcttgagtagtaaagtcttgtgctataaacgcataagcaggcaaagagtacatgtgttgagctaccaaagaagt 695  Q
    || |||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  10996483 tgaattgatgatgagtatataccgcagcttgagctgtaaagtcttgcgctataaacgcataagtaggtaaagagtacatgtgttgagctaccaaagaagt 10996384  T
Q  696 aatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10996383 aatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 10996334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 630
Target Start/End: Complemental strand, 3065875 - 3065837
Alignment:
Q  592 gcaatgtattgatgatgagtatataacgcagcttgagta 630  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  3065875 gcaatgtattgatgatgactatataaggcagcttgagta 3065837  T

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Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 18045297 - 18045181
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 176  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18045297 ttttatccgacattaacttggaaccgcatgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaaccaagagcaatagcatgatgaaccaa 18045198  T
Q  177 gaagtctccagggccta 193  Q
    |||||||||||||||||    
T  18045197 gaagtctccagggccta 18045181  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 815 - 903
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  815 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 903  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 35070165 - 35070125
Alignment:
Q  42 gaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  35070165 gaggtggtacttgtgatatttcggcttgggacacaatttat 35070125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 35096211 - 35096171
Alignment:
Q  42 gaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  35096211 gaggtggtacttgtgatatttcggcttgggacacaatttat 35096171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 703
Target Start/End: Original strand, 32566650 - 32566683
Alignment:
Q  670 tacatgtgttgagctaccaaagaagtaatgaccc 703  Q
    ||||||| ||||||||||||||||||||||||||    
T  32566650 tacatgtattgagctaccaaagaagtaatgaccc 32566683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 29443301 - 29443212
Alignment:
Q  173 ccaagaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgcc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443301 ccaagaagtctccagggcctattgttaagaatagagaattactattctcattaatagcatttaaccaaccaggcaaccatatgcttcgcc 29443212  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 811 - 906
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  811 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 906  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 630
Target Start/End: Original strand, 18013446 - 18013484
Alignment:
Q  592 gcaatgtattgatgatgagtatataacgcagcttgagta 630  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  18013446 gcaatgtattgatgatgactatataaggcagcttgagta 18013484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 7243557 - 7243484
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgtatgtaaa 150  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||    
T  7243557 ttttatccggcattaacttggaactgtgtgcatccaaagcaccgtttactaatatcaatgtagttgtatgtaaa 7243484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7243574 - 7243637
Alignment:
Q  19 ttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttat 82  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  7243574 tttttcttgcgatggtccgagacaaggtggtacttgtgatatttcggcttgggatgcattttat 7243637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 847 - 906
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  847 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 906  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 38363023 - 38363089
Alignment:
Q  77 ttttatccggcattaacttggaaccgcgtgcatccaaagcaccttttactaagatcaatgtagttgt 143  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||| ||||    
T  38363023 ttttatccggcgttaacttggaactgcgtacatccaaagcacattttactaagatcaatgtacttgt 38363089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 41602027 - 41602085
Alignment:
Q  322 ttaccatgagcagattgtatccattgggcaaatataggttcgatcaagatttgtttctc 380  Q
    ||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  41602027 ttaccataagcatattgtatccattggacaaatataggatcgatcaagatttgtttctc 41602085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 847 - 906
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  847 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 906  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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