View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21399_low_2 (Length: 696)
Name: NF21399_low_2
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21399_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 6 - 681
Target Start/End: Complemental strand, 6578439 - 6577771
Alignment:
| Q |
6 |
catcatcagaagaaaaccaccaatcttccggggaagctttttgtggcgctgcgacgaaagaagcagtcgatgattcgggaggagaacttctgggggccac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6578439 |
catcatcagaagaaaaccaccaatcttccggggaagcgggttgtggcgctgcgacgaaagaagcagtcgatgattcgggaggagaacttctggtggccac |
6578340 |
T |
|
| Q |
106 |
agaagacaccaagacagaaggtgacattggaattagtgccttccttggtgactgtgatttggtatgagatgaagcagctagagattgatctcaacaacaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6578339 |
agaagacaccaagacagaaggtgacataggaattagtgccttccttggtgactgtgatttggtatgagatgaagcagctagagattgatctcaacaacaa |
6578240 |
T |
|
| Q |
206 |
ggcagccacgagggatgctaaggacaatctctcttgcactctctcttagacactctttcattcattggtccacatcatcatttttcatcacttttcataa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6578239 |
ggcagccacgagggatgctaaggacaatctctcttgcactctctcttagacactttttcattcattggtccacatcatcatttttcatcacttttcataa |
6578140 |
T |
|
| Q |
306 |
actttgtacatgaaaagtcaccttcttcttcttcactgtgcatcgaattggaaacctattttaataatcatcaaaaagaattctgctaaaacacactatc |
405 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6578139 |
actttgtacatgaaaagtcaccttctt---cttcactgtgcatcgaattggaaacctattttaataatcatcaaaaagaattctgctaaaacacactatc |
6578043 |
T |
|
| Q |
406 |
aaagctcaacaagttaaatacttgctttttctacatggtaaacatgagttatttctctaattnnnnnnntgggttccttgatttcttagcggttctttga |
505 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6578042 |
aaagctcaacaagttaaatacttgctctttctatatggtaaacatgagttatttctctaattaaaaaaatgggttccttgatttcttagcggttctttga |
6577943 |
T |
|
| Q |
506 |
ttttctctgcatttctctttatcacatctgcagtaacccaccctcatcaattaattatatcgttggctcttctctgttcgtaattcacctgcatattttt |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6577942 |
ttttctctgcatttctctttatcacatctgcagtaacccaccctcatc----aattttatcgttggctcttctctgttcgtaatttacctgcatattttt |
6577847 |
T |
|
| Q |
606 |
ctaattcaaaaacgtaacgattttccgacgattgacgtgctatcatatcatagcttgcagtgcaatggatttgaac |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6577846 |
ctaattcaaaaacgtaacgattttccgacgattgacgtgctatcatatcatagcttgcagtacaatggatttgaac |
6577771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 42202011 - 42202086
Alignment:
| Q |
215 |
gagggatgctaaggacaatctctcttgcactctctcttagacactctttcattcattggtccacatcatcattttt |
290 |
Q |
| |
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|||||||||||| || ||| | |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42202011 |
gagggatgctaacgataatatatcttacactttctcttagacactcttttattcattggtccacatcatcattttt |
42202086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 31305880 - 31305830
Alignment:
| Q |
215 |
gagggatgctaaggacaatctctcttgcactctctcttagacactctttca |
265 |
Q |
| |
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|||| ||||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
31305880 |
gaggaatgctaaggacaacctctctcgcactctctcttaaacactctttca |
31305830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 42641504 - 42641467
Alignment:
| Q |
215 |
gagggatgctaaggacaatctctcttgcactctctctt |
252 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| |
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| T |
42641504 |
gagggatgctaaggacaatcactcttacactctctctt |
42641467 |
T |
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