View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21399_low_3 (Length: 524)
Name: NF21399_low_3
Description: NF21399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21399_low_3 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 81725 - 81216
Alignment:
| Q |
1 |
atctctttggtgtctttatgaacagtgaca------acaacttcggatggaagccactgccaaaacatagacctgccaaagaaagatgtagttaaagttg |
94 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
81725 |
atctctttggtgtctttatgaacagtgacagggacaacaacttcggatggaagccactgccaaaacatggacctgccaaagaaagatgtagttaaagttg |
81626 |
T |
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| Q |
95 |
ggtatcatcgtggtgtgcacatatacagttaaccatgaacttataaaatttgtgagcatgtttacataactagaagttttgagaacaacatcaacaaaat |
194 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81625 |
ggtatcattgtggtgtgcacatatacagttaaccatgaacttataaaatttgtgagcatgtttacataactagaagttttgagaacaacatcaacaaaat |
81526 |
T |
|
| Q |
195 |
agaggccaaagtaaaatta-gtaagaaaggaacnnnnnnnnttacttataagaacaaaaacctattaaccatgtgacgaagtaccatagttaagattgag |
293 |
Q |
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|||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
81525 |
agaggccaaaataaaattaagtaagaaaggaacaaaaaaatttacttataagaacaaaaacctattaaccatgtgaccaagtaccatagttaagattgag |
81426 |
T |
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| Q |
294 |
atgaattgtaattcaattcagcaagaacataataggttcaaactaactttcaattttat-aaaaataattcaaaacaattagaagcaaccttaggggttc |
392 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||| |
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| T |
81425 |
atgaattgtaattcaactcagaaagaacataataggttcaaactaactttcaatttcataaaaaaaaaatcaaaacaattagaagcaaccttaggggttc |
81326 |
T |
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| Q |
393 |
aattgattttgatggagaatggttgagacatagtggagacggccaatcacttcgacgaccagttcgatgacgatgaaaaggaacgagggtaagatggagg |
492 |
Q |
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| T |
81325 |
aattgattttgat-gagaatggttgagacatagtggagacggccaatcagttcgacggccagttcgatgacgatgaaaaggaacgagggtaagatggagg |
81227 |
T |
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| Q |
493 |
gcgagtccaac |
503 |
Q |
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| T |
81226 |
gcgagtccaac |
81216 |
T |
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